Wall clock time and date at job start Tue Mar 31 2020 05:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42891 * 114.00391 * 2 1 4 4 C 1.52998 * 109.47242 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47476 * 174.99905 * 4 3 2 6 6 C 1.53003 * 109.46934 * 54.99970 * 4 3 2 7 7 O 1.42903 * 109.47279 * 295.00003 * 4 3 2 8 8 C 1.35983 * 116.99839 * 209.99697 * 7 4 3 9 9 C 1.40154 * 125.83492 * 179.97438 * 8 7 4 10 10 C 1.36065 * 107.82085 * 180.02562 * 9 8 7 11 11 N 1.39455 * 126.21649 * 179.97438 * 10 9 8 12 12 C 1.34777 * 120.00047 * 0.02562 * 11 10 9 13 13 O 1.21292 * 119.99984 * 359.97438 * 12 11 10 14 14 C 1.50706 * 119.99762 * 179.97438 * 12 11 10 15 15 C 1.50699 * 109.46817 * 179.97438 * 14 12 11 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 12 17 17 C 1.37874 * 120.00270 * 180.02562 * 15 14 12 18 18 N 1.31522 * 119.99835 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00390 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46950 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47074 * 119.99834 * 19 17 15 22 22 H 1.48505 * 109.46997 * 239.99828 * 19 17 15 23 23 N 1.35812 * 107.56533 * 0.22774 * 10 9 8 24 24 H 0.96999 * 126.04421 * 179.77160 * 23 10 9 25 25 N 1.31106 * 125.84108 * 0.02562 * 8 7 4 26 26 H 1.08994 * 109.47377 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46642 * 300.00304 * 1 2 3 28 28 H 1.08999 * 109.46618 * 59.99600 * 1 2 3 29 29 H 1.09007 * 109.47340 * 60.00377 * 3 2 1 30 30 H 1.08994 * 109.47565 * 299.99876 * 3 2 1 31 31 H 1.09006 * 109.46922 * 180.02562 * 6 4 3 32 32 H 1.08997 * 109.46834 * 299.99702 * 6 4 3 33 33 H 1.08995 * 109.46988 * 60.00253 * 6 4 3 34 34 H 1.08004 * 126.08258 * 359.97438 * 9 8 7 35 35 H 0.96999 * 119.99906 * 179.97438 * 11 10 9 36 36 H 1.09000 * 109.47318 * 299.99141 * 14 12 11 37 37 H 1.09000 * 109.47161 * 59.99772 * 14 12 11 38 38 H 0.96992 * 120.00038 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.9787 2.1762 -0.0889 6 6 3.9790 0.3191 -1.1807 7 8 3.9649 0.5794 1.2220 8 6 5.1917 0.9346 1.6889 9 6 5.7927 0.4581 2.8620 10 6 7.0114 1.0523 2.9764 11 7 7.9320 0.8528 4.0048 12 6 7.6455 0.0020 5.0100 13 8 6.5868 -0.5898 5.0206 14 6 8.6407 -0.2140 6.1210 15 6 8.0818 -1.2036 7.1106 16 1 7.1036 -1.6328 6.9512 17 6 8.8186 -1.5602 8.2200 18 7 10.0096 -1.0371 8.4144 19 14 8.1261 -2.7875 9.4463 20 1 6.7786 -3.2251 9.0014 21 1 9.0268 -3.9651 9.5305 22 1 8.0221 -2.1473 10.7823 23 7 7.1660 1.8792 1.9102 24 1 7.9383 2.4371 1.7279 25 7 6.0142 1.7818 1.1192 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 1.6888 1.8463 0.8901 30 1 1.6888 1.8463 -0.8899 31 1 5.0656 0.2326 -1.1799 32 1 3.5359 -0.6727 -1.0910 33 1 3.6515 0.7806 -2.1122 34 1 5.3642 -0.2532 3.5525 35 1 8.7788 1.3258 3.9962 36 1 9.5709 -0.6013 5.7054 37 1 8.8342 0.7331 6.6246 38 1 10.5278 -1.2877 9.1950 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189745.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:17 Heat of formation + Delta-G solvation = -65.553569 kcal Electronic energy + Delta-G solvation = -21646.127611 eV Core-core repulsion = 18104.358780 eV Total energy + Delta-G solvation = -3541.768831 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.58998 -40.68310 -39.79503 -38.34727 -35.79040 -35.13549 -33.47267 -31.55663 -31.38917 -29.71847 -28.30861 -26.67028 -25.98803 -23.86097 -23.02085 -21.53939 -20.97503 -20.05536 -18.53114 -18.23522 -17.40888 -17.32188 -16.98983 -16.76427 -16.52680 -16.43951 -16.08505 -15.65867 -14.95768 -14.83624 -14.72771 -14.45513 -14.18822 -13.90067 -13.36792 -13.28098 -13.01749 -12.81498 -12.65785 -12.55975 -12.14094 -12.04478 -12.03782 -11.62450 -11.57360 -11.42835 -10.68306 -10.63513 -10.61673 -9.70756 -9.26352 -8.25856 -6.32152 0.60930 1.19938 1.41666 1.44186 1.58117 1.59649 1.81217 2.00499 2.42835 2.74066 2.82290 3.11088 3.59009 3.82689 3.95997 4.03295 4.23513 4.33838 4.41681 4.50855 4.55057 4.57814 4.66055 4.84664 4.87715 4.88949 4.94499 5.09393 5.23387 5.26302 5.41109 5.73502 5.88352 6.05089 6.19619 6.43738 6.52245 6.68846 6.80997 7.20316 7.38295 8.86075 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.023513 B = 0.003162 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.522561 B = 8854.195869 C = 9868.263708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.064 3.936 4 C 0.078 3.922 5 H 0.101 0.899 6 C -0.159 4.159 7 O -0.294 6.294 8 C 0.277 3.723 9 C -0.325 4.325 10 C 0.353 3.647 11 N -0.640 5.640 12 C 0.526 3.474 13 O -0.538 6.538 14 C 0.017 3.983 15 C -0.538 4.538 16 H 0.057 0.943 17 C 0.015 3.985 18 N -0.921 5.921 19 Si 0.960 3.040 20 H -0.276 1.276 21 H -0.274 1.274 22 H -0.274 1.274 23 N -0.463 5.463 24 H 0.458 0.542 25 N -0.342 5.342 26 H 0.091 0.909 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.147 0.853 35 H 0.432 0.568 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.016 9.221 -18.799 23.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C -0.012 4.012 4 C 0.022 3.978 5 H 0.118 0.882 6 C -0.217 4.217 7 O -0.198 6.198 8 C 0.072 3.928 9 C -0.357 4.357 10 C 0.129 3.871 11 N -0.290 5.290 12 C 0.316 3.684 13 O -0.411 6.411 14 C -0.022 4.022 15 C -0.576 4.576 16 H 0.075 0.925 17 C -0.184 4.184 18 N -0.561 5.561 19 Si 0.785 3.215 20 H -0.201 1.201 21 H -0.199 1.199 22 H -0.199 1.199 23 N -0.185 5.185 24 H 0.307 0.693 25 N -0.184 5.184 26 H 0.110 0.890 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.165 0.835 35 H 0.272 0.728 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.613 9.131 -19.472 23.983 hybrid contribution 0.424 -0.389 1.328 1.448 sum -10.188 8.741 -18.144 22.570 Atomic orbital electron populations 1.22923 0.79463 1.03714 1.00975 1.87936 1.21427 1.27951 1.95602 1.22771 0.90257 0.85527 1.02645 1.22784 0.94290 0.98171 0.82543 0.88158 1.22080 1.01102 1.00931 0.97549 1.86451 1.26505 1.65357 1.41504 1.20307 0.86725 0.93440 0.92312 1.20792 0.96908 1.14833 1.03205 1.17927 0.90755 0.92665 0.85724 1.43231 1.19889 1.45392 1.20524 1.21923 0.88500 0.76093 0.81863 1.90541 1.26811 1.47408 1.76363 1.19112 0.93561 0.99175 0.90361 1.21388 1.03649 1.25433 1.07143 0.92451 1.25684 0.95129 0.98128 0.99476 1.70005 1.11826 1.44710 1.29576 0.85463 0.78445 0.78904 0.78657 1.20050 1.19936 1.19907 1.45633 1.17593 1.38244 1.17025 0.69285 1.77242 0.95984 1.26728 1.18473 0.89046 0.93731 0.92093 0.92440 0.87954 0.93208 0.92218 0.88567 0.83505 0.72802 0.92510 0.92478 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.62 16 2 O -0.41 -9.34 9.79 -144.34 -1.41 -10.75 16 3 C 0.06 1.21 5.81 71.98 0.42 1.63 16 4 C 0.08 1.82 3.02 30.59 0.09 1.91 16 5 H 0.10 2.13 7.29 -2.39 -0.02 2.12 16 6 C -0.16 -3.37 9.34 71.98 0.67 -2.70 16 7 O -0.29 -9.64 9.83 -88.72 -0.87 -10.51 16 8 C 0.28 9.51 7.83 85.27 0.67 10.18 16 9 C -0.33 -12.62 9.66 22.23 0.21 -12.41 16 10 C 0.35 11.38 8.10 131.14 1.06 12.44 16 11 N -0.64 -19.99 5.42 -308.20 -1.67 -21.66 16 12 C 0.53 22.44 7.79 87.66 0.68 23.12 16 13 O -0.54 -27.15 12.59 -3.07 -0.04 -27.18 16 14 C 0.02 0.82 5.46 29.10 0.16 0.98 16 15 C -0.54 -30.11 8.92 25.60 0.23 -29.88 16 16 H 0.06 3.41 6.75 -2.91 -0.02 3.39 16 17 C 0.01 0.82 5.46 84.65 0.46 1.29 16 18 N -0.92 -51.49 13.29 21.45 0.28 -51.20 16 19 Si 0.96 44.13 29.54 68.60 2.03 46.15 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 23 N -0.46 -11.59 7.40 -55.09 -0.41 -12.00 16 24 H 0.46 7.24 8.96 -213.34 -1.91 5.33 16 25 N -0.34 -10.01 11.60 -170.59 -1.98 -11.99 16 26 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.04 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.06 1.44 7.56 -2.39 -0.02 1.42 16 33 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.15 6.72 5.83 -2.91 -0.02 6.70 16 35 H 0.43 9.50 8.82 -92.71 -0.82 8.68 16 36 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -72.72 329.98 0.21 -72.50 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -1.63 Total: 18.45 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 5.91 Total: 8.19 kcal Atomic # 7 Polarization: -93.08 SS G_CDS: -3.77 Total: -96.86 kcal Atomic # 8 Polarization: -46.12 SS G_CDS: -2.32 Total: -48.44 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -72.72 0.21 -72.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189745.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.950 kcal (2) G-P(sol) polarization free energy of solvation -72.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds