Wall clock time and date at job start Tue Mar 31 2020 05:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47276 * 2 1 4 4 C 1.46499 * 120.00136 * 269.99459 * 3 2 1 5 5 C 1.50697 * 109.47293 * 270.00491 * 4 3 2 6 6 C 1.38255 * 119.99684 * 259.72180 * 5 4 3 7 7 C 1.38215 * 120.07142 * 179.76722 * 6 5 4 8 8 C 1.38265 * 120.06767 * 0.50957 * 7 6 5 9 9 C 1.38360 * 119.99809 * 359.74327 * 8 7 6 10 10 F 1.35102 * 120.03596 * 179.97438 * 9 8 7 11 11 C 1.38370 * 120.00241 * 79.99554 * 5 4 3 12 12 F 1.35095 * 120.03309 * 0.02562 * 11 5 4 13 13 C 1.34784 * 119.99971 * 89.99654 * 3 2 1 14 14 O 1.21283 * 119.99649 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99774 * 359.72768 * 13 3 2 16 16 C 1.50700 * 109.46617 * 180.02562 * 15 13 3 17 17 H 1.07996 * 120.00295 * 359.97438 * 16 15 13 18 18 C 1.37888 * 119.99812 * 179.97438 * 16 15 13 19 19 N 1.31510 * 119.99839 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99999 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46956 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46598 * 120.00078 * 20 18 16 23 23 H 1.48496 * 109.47421 * 240.00214 * 20 18 16 24 24 H 1.08998 * 109.47074 * 300.00425 * 1 2 3 25 25 H 1.09007 * 109.46853 * 59.99785 * 1 2 3 26 26 H 1.08996 * 109.47549 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47074 * 239.99575 * 2 1 3 28 28 H 1.09008 * 109.46412 * 119.99581 * 2 1 3 29 29 H 1.08997 * 109.46865 * 30.00228 * 4 3 2 30 30 H 1.08998 * 109.47058 * 149.99741 * 4 3 2 31 31 H 1.08004 * 119.96867 * 0.02562 * 6 5 4 32 32 H 1.07996 * 119.96796 * 180.25058 * 7 6 5 33 33 H 1.07995 * 119.99669 * 179.76526 * 8 7 6 34 34 H 1.09001 * 109.46809 * 299.99238 * 15 13 3 35 35 H 1.08993 * 109.47525 * 59.99679 * 15 13 3 36 36 H 0.97001 * 120.00258 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7037 6 6 4.6453 2.8068 -1.4885 7 6 5.9521 2.5892 -1.8825 8 6 6.3005 1.4033 -2.5022 9 6 5.3416 0.4308 -2.7236 10 9 5.6811 -0.7281 -3.3295 11 6 4.0313 0.6469 -2.3235 12 9 3.0931 -0.3008 -2.5395 13 6 2.2429 2.0166 1.1673 14 8 2.6477 3.1599 1.1672 15 6 1.9858 1.3082 2.4723 16 6 2.3129 2.2314 3.6177 17 1 2.6714 3.2308 3.4204 18 6 2.1543 1.8000 4.9177 19 7 1.7172 0.5831 5.1580 20 14 2.5603 2.9439 6.3375 21 1 3.0290 4.2481 5.8039 22 1 1.3458 3.1559 7.1652 23 1 3.6284 2.3374 7.1721 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 1.5819 1.6877 -2.0283 30 1 2.0957 3.1410 -1.1384 31 1 4.3743 3.7355 -1.0083 32 1 6.7010 3.3479 -1.7100 33 1 7.3212 1.2360 -2.8129 34 1 0.9365 1.0186 2.5279 35 1 2.6121 0.4182 2.5322 36 1 1.6059 0.2795 6.0725 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143198821.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:45 Heat of formation + Delta-G solvation = -106.384549 kcal Electronic energy + Delta-G solvation = -22387.382700 eV Core-core repulsion = 18700.463038 eV Total energy + Delta-G solvation = -3686.919662 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.52198 -48.60459 -39.58831 -38.47148 -35.39888 -33.09040 -32.29973 -30.34514 -29.69196 -29.00360 -26.25806 -23.62405 -23.04614 -22.71414 -21.74456 -18.51163 -17.89433 -17.33864 -16.90599 -16.65613 -16.37624 -15.77947 -15.43332 -14.97725 -14.89518 -14.79968 -14.42861 -14.30111 -13.48359 -13.44255 -12.96822 -12.89894 -12.43479 -12.22801 -12.11114 -12.07212 -11.77809 -11.44179 -11.20780 -11.16593 -10.81358 -10.73334 -10.50198 -9.95963 -9.22414 -9.17837 -8.78923 -8.56158 -8.44294 -8.22612 -6.06155 -4.05625 0.86555 0.89996 3.20459 3.32553 3.39776 3.47661 3.60248 3.72122 3.76634 4.27894 4.47517 4.48965 4.65304 4.90603 5.03460 5.22008 5.31512 5.33620 5.53930 5.65315 5.68314 5.71134 5.81552 5.91685 5.99088 6.08602 6.15863 6.23690 6.33188 6.51527 6.69053 6.99676 7.20790 7.33540 7.92268 7.96608 8.34812 9.04785 9.15586 9.59279 11.06201 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.020026 B = 0.004828 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.864792 B = 5797.546000 C = 6400.249691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.099 3.901 3 N -0.623 5.623 4 C 0.154 3.846 5 C -0.103 4.103 6 C -0.075 4.075 7 C -0.102 4.102 8 C -0.129 4.129 9 C 0.060 3.940 10 F -0.133 7.133 11 C 0.076 3.924 12 F -0.126 7.126 13 C 0.519 3.481 14 O -0.542 6.542 15 C 0.008 3.992 16 C -0.507 4.507 17 H 0.075 0.925 18 C 0.055 3.945 19 N -0.900 5.900 20 Si 0.899 3.101 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.049 0.951 35 H 0.046 0.954 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.268 -0.577 -16.898 17.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.024 4.024 3 N -0.359 5.359 4 C 0.030 3.970 5 C -0.105 4.105 6 C -0.094 4.094 7 C -0.120 4.120 8 C -0.148 4.148 9 C 0.040 3.960 10 F -0.111 7.111 11 C 0.055 3.945 12 F -0.104 7.104 13 C 0.311 3.689 14 O -0.418 6.418 15 C -0.031 4.031 16 C -0.546 4.546 17 H 0.093 0.907 18 C -0.146 4.146 19 N -0.540 5.540 20 Si 0.727 3.273 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.164 0.836 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.396 -0.152 -16.751 17.319 hybrid contribution 0.106 -0.151 0.637 0.663 sum 4.502 -0.304 -16.114 16.734 Atomic orbital electron populations 1.22174 0.96184 1.01881 1.02371 1.21675 0.94427 0.82649 1.03648 1.48362 1.67966 1.14606 1.04936 1.20141 0.89669 1.00108 0.87062 1.20446 0.99438 0.92370 0.98286 1.21236 0.91890 0.99589 0.96703 1.21121 0.96741 0.96733 0.97403 1.21067 0.99256 0.93288 1.01228 1.17642 0.92411 0.84597 1.01373 1.91512 1.92669 1.46067 1.80884 1.17525 0.85051 0.88379 1.03523 1.91447 1.63498 1.62745 1.92737 1.22104 0.74477 0.86731 0.85607 1.90500 1.45336 1.18662 1.87272 1.19275 0.99138 0.96969 0.87727 1.21219 1.43617 1.00282 0.89473 0.90676 1.25004 0.95248 0.95300 0.99026 1.69965 1.46761 1.16952 1.20304 0.86401 0.77933 0.81103 0.81847 1.19499 1.21022 1.21035 0.91633 0.93098 0.91907 0.90551 0.89579 0.89954 0.88422 0.83634 0.84232 0.83954 0.93278 0.93611 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 10.24 37.16 0.38 -1.96 16 2 C 0.10 1.54 5.93 -4.04 -0.02 1.51 16 3 N -0.62 -10.99 2.46 -175.06 -0.43 -11.42 16 4 C 0.15 2.25 5.27 -5.20 -0.03 2.23 16 5 C -0.10 -1.45 5.47 -104.57 -0.57 -2.02 16 6 C -0.08 -0.98 9.67 -39.58 -0.38 -1.36 16 7 C -0.10 -1.09 10.04 -39.58 -0.40 -1.49 16 8 C -0.13 -1.40 10.02 -39.53 -0.40 -1.79 16 9 C 0.06 0.78 7.31 -39.37 -0.29 0.49 16 10 F -0.13 -1.80 17.18 2.25 0.04 -1.76 16 11 C 0.08 1.06 7.25 -39.36 -0.29 0.78 16 12 F -0.13 -1.79 14.10 2.25 0.03 -1.76 16 13 C 0.52 11.61 7.67 -10.98 -0.08 11.53 16 14 O -0.54 -13.33 15.04 5.56 0.08 -13.25 16 15 C 0.01 0.20 4.02 -29.04 -0.12 0.08 16 16 C -0.51 -14.58 8.92 -34.44 -0.31 -14.88 16 17 H 0.08 2.24 6.75 -52.49 -0.35 1.89 16 18 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 20 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H 0.06 1.05 7.20 -51.93 -0.37 0.67 16 25 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.08 1.08 5.44 -51.93 -0.28 0.79 16 28 H 0.09 1.45 6.44 -51.92 -0.33 1.12 16 29 H 0.08 1.03 7.87 -51.93 -0.41 0.62 16 30 H 0.10 1.46 7.28 -51.93 -0.38 1.08 16 31 H 0.15 1.91 8.03 -52.48 -0.42 1.49 16 32 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 34 H 0.05 1.26 7.17 -51.93 -0.37 0.89 16 35 H 0.05 1.19 7.39 -51.93 -0.38 0.81 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 314.48 15.07 4.74 4.74 Total: -1.00 -31.73 314.48 -6.56 -38.28 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -4.14 Total: -0.85 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -2.60 Total: -5.42 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.31 Total: -36.94 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.08 Total: -13.25 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.07 Total: -3.52 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.73 -6.56 -38.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198821.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.103 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds