Wall clock time and date at job start Tue Mar 31 2020 05:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99977 * 2 1 4 4 H 1.48494 * 109.47272 * 275.00029 * 3 2 1 5 5 H 1.48505 * 109.46920 * 34.99717 * 3 2 1 6 6 H 1.48494 * 109.47251 * 154.99283 * 3 2 1 7 7 C 1.37879 * 120.00329 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00189 * 175.12468 * 7 2 1 9 9 C 1.50702 * 119.99724 * 355.39563 * 7 2 1 10 10 H 1.08997 * 109.50590 * 305.09931 * 9 7 2 11 11 C 1.53125 * 109.49853 * 65.17418 * 9 7 2 12 12 C 1.53128 * 109.15585 * 177.59567 * 11 9 7 13 13 C 1.53038 * 109.27385 * 302.33920 * 12 11 9 14 14 N 1.46850 * 109.52443 * 59.18862 * 13 12 11 15 15 C 1.38998 * 110.99971 * 174.15483 * 14 13 12 16 16 N 1.32681 * 120.09454 * 54.81883 * 15 14 13 17 17 C 1.32215 * 119.91058 * 179.74248 * 16 15 14 18 18 C 1.38210 * 120.10474 * 0.55480 * 17 16 15 19 19 N 1.32234 * 120.18736 * 359.69487 * 18 17 16 20 20 C 1.31946 * 120.09146 * 0.02562 * 19 18 17 21 21 C 1.50705 * 120.05792 * 180.02562 * 20 19 18 22 22 F 1.39894 * 109.47052 * 124.91535 * 21 20 19 23 23 F 1.39900 * 109.47177 * 244.91654 * 21 20 19 24 24 C 1.46844 * 111.22774 * 298.27382 * 14 13 12 25 25 H 0.96994 * 119.99830 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.52192 * 297.49275 * 11 9 7 27 27 H 1.08993 * 109.52432 * 57.62908 * 11 9 7 28 28 H 1.08989 * 109.50484 * 62.28479 * 12 11 9 29 29 H 1.08996 * 109.49666 * 182.40641 * 12 11 9 30 30 H 1.09011 * 109.45641 * 179.19561 * 13 12 11 31 31 H 1.08997 * 109.46477 * 299.16492 * 13 12 11 32 32 H 1.08003 * 119.95092 * 180.29234 * 17 16 15 33 33 H 1.08001 * 119.90492 * 179.71801 * 18 17 16 34 34 H 1.08995 * 109.46570 * 4.91293 * 21 20 19 35 35 H 1.09001 * 109.42901 * 301.68379 * 24 14 13 36 36 H 1.08998 * 109.49529 * 181.71777 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3910 2.1075 -1.3947 5 1 1.5034 2.6199 0.8030 6 1 3.5955 1.4121 0.5918 7 6 2.0046 -1.1940 0.0005 8 1 3.0817 -1.1957 -0.0789 9 6 1.2548 -2.4970 0.1059 10 1 0.6213 -2.4817 0.9928 11 6 0.3854 -2.6886 -1.1400 12 6 -0.3263 -4.0416 -1.0529 13 6 0.7167 -5.1531 -0.9163 14 7 1.5219 -4.9250 0.2903 15 6 2.3919 -5.9853 0.5164 16 7 3.2340 -6.3692 -0.4343 17 6 4.0635 -7.3749 -0.2136 18 6 4.0465 -8.0336 1.0013 19 7 3.2055 -7.6575 1.9499 20 6 2.3782 -6.6513 1.7397 21 6 1.4204 -6.2229 2.8216 22 9 1.5955 -4.8605 3.0867 23 9 0.1066 -6.4506 2.3982 24 6 2.2518 -3.6534 0.2099 25 1 -0.4849 0.8400 -0.0004 26 1 -0.3549 -1.8904 -1.1937 27 1 1.0139 -2.6632 -2.0301 28 1 -0.9845 -4.0513 -0.1842 29 1 -0.9135 -4.2026 -1.9569 30 1 0.2125 -6.1166 -0.8397 31 1 1.3658 -5.1517 -1.7919 32 1 4.7525 -7.6849 -0.9853 33 1 4.7223 -8.8576 1.1765 34 1 1.6150 -6.7973 3.7272 35 1 2.8944 -3.6592 -0.6705 36 1 2.8623 -3.5272 1.1040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148822698.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:41 Heat of formation + Delta-G solvation = -44.878411 kcal Electronic energy + Delta-G solvation = -23158.304913 eV Core-core repulsion = 19506.345108 eV Total energy + Delta-G solvation = -3651.959805 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.63063 -46.63022 -41.31089 -38.24525 -34.69398 -33.81060 -32.26744 -30.29998 -29.88677 -26.96064 -24.99066 -24.94051 -22.99326 -22.12356 -21.43921 -18.87311 -18.05021 -17.63776 -17.18937 -16.95442 -16.34876 -15.95161 -15.15436 -15.01826 -14.47913 -14.19953 -13.88617 -13.47365 -13.34027 -12.97218 -12.74466 -12.56450 -12.48718 -12.33525 -11.82310 -11.73474 -11.30376 -11.24208 -10.95094 -10.78262 -10.70258 -10.14193 -9.88697 -9.68641 -9.47944 -9.28217 -9.01541 -8.76521 -8.31170 -8.12668 -5.97646 -4.02880 0.51041 0.93270 3.31801 3.34434 3.39068 3.41736 3.43434 3.74743 4.19444 4.21656 4.36543 4.46741 4.79833 4.89645 4.99570 5.22665 5.33220 5.39135 5.56818 5.75044 5.91447 6.01028 6.17359 6.35482 6.43019 6.63832 6.70298 6.87141 7.01104 7.11471 7.31776 7.42030 7.55901 7.67735 7.75800 8.05588 8.13466 8.45321 9.00600 9.61124 11.09322 Molecular weight = 283.12amu Principal moments of inertia in cm(-1) A = 0.021483 B = 0.005445 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.013188 B = 5141.159146 C = 5239.574206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.053 0.947 9 C 0.058 3.942 10 H 0.042 0.958 11 C -0.110 4.110 12 C -0.116 4.116 13 C 0.071 3.929 14 N -0.485 5.485 15 C 0.308 3.692 16 N -0.468 5.468 17 C 0.083 3.917 18 C 0.028 3.972 19 N -0.409 5.409 20 C 0.012 3.988 21 C 0.347 3.653 22 F -0.177 7.177 23 F -0.187 7.187 24 C 0.078 3.922 25 H 0.260 0.740 26 H 0.090 0.910 27 H 0.033 0.967 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.043 0.957 32 H 0.171 0.829 33 H 0.175 0.825 34 H 0.121 0.879 35 H 0.034 0.966 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.771 -15.965 1.838 16.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.718 3.282 4 H -0.209 1.209 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.071 0.929 9 C 0.039 3.961 10 H 0.060 0.940 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.056 4.056 14 N -0.209 5.209 15 C 0.077 3.923 16 N -0.186 5.186 17 C -0.079 4.079 18 C -0.133 4.133 19 N -0.124 5.124 20 C -0.132 4.132 21 C 0.292 3.708 22 F -0.158 7.158 23 F -0.168 7.168 24 C -0.047 4.047 25 H 0.070 0.930 26 H 0.108 0.892 27 H 0.051 0.949 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.188 0.812 33 H 0.192 0.808 34 H 0.138 0.862 35 H 0.052 0.948 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.238 -15.742 2.225 16.454 hybrid contribution 1.111 0.814 -0.850 1.619 sum 5.349 -14.928 1.375 15.917 Atomic orbital electron populations 1.69910 1.05834 1.26411 1.50281 1.24911 0.94811 0.98909 0.95013 0.86613 0.80000 0.83700 0.77872 1.20862 1.21138 1.19942 1.21065 0.93059 0.90495 1.50763 0.92859 1.18687 0.92461 0.89738 0.95212 0.94033 1.21685 0.99955 0.94401 0.98765 1.21692 0.96956 0.96093 1.00688 1.22057 0.95240 0.98989 0.89314 1.60408 1.20345 1.00606 1.39577 1.21051 0.89372 0.92356 0.89518 1.68836 1.03706 1.12756 1.33320 1.23833 0.95665 0.91018 0.97352 1.23618 0.97983 1.01063 0.90595 1.67965 1.02057 1.10309 1.32097 1.22574 0.99089 0.95384 0.96122 1.19632 0.77205 0.79932 0.94046 1.93102 1.95014 1.33426 1.94258 1.93028 1.37471 1.94362 1.91974 1.22444 0.96711 0.85977 0.99547 0.93007 0.89207 0.94851 0.91660 0.92905 0.92485 0.93844 0.81179 0.80788 0.86186 0.94760 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.29 11.56 55.43 0.64 -24.65 16 2 C 0.07 1.81 5.36 -17.82 -0.10 1.71 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.20 8.50 -34.44 -0.29 -14.50 16 8 H 0.05 1.46 7.75 -52.49 -0.41 1.05 16 9 C 0.06 1.46 2.21 -91.69 -0.20 1.26 16 10 H 0.04 1.17 8.14 -51.93 -0.42 0.74 16 11 C -0.11 -2.60 5.08 -26.60 -0.14 -2.73 16 12 C -0.12 -2.30 6.09 -26.65 -0.16 -2.46 16 13 C 0.07 1.31 5.19 -3.83 -0.02 1.29 16 14 N -0.49 -9.47 3.39 -173.10 -0.59 -10.05 16 15 C 0.31 5.35 5.22 -154.72 -0.81 4.55 16 16 N -0.47 -7.45 9.91 -12.24 -0.12 -7.57 16 17 C 0.08 0.95 11.22 -17.40 -0.20 0.75 16 18 C 0.03 0.29 11.21 -17.39 -0.19 0.09 16 19 N -0.41 -5.44 10.40 -9.12 -0.09 -5.53 16 20 C 0.01 0.19 6.31 -82.15 -0.52 -0.32 16 21 C 0.35 5.19 5.22 36.01 0.19 5.37 16 22 F -0.18 -3.18 16.63 2.25 0.04 -3.14 16 23 F -0.19 -3.06 17.19 2.25 0.04 -3.02 16 24 C 0.08 1.72 4.57 -3.84 -0.02 1.70 16 25 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 26 H 0.09 2.35 6.39 -51.93 -0.33 2.02 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 1.34 8.14 -51.94 -0.42 0.91 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.98 8.11 -51.92 -0.42 0.56 16 31 H 0.04 0.82 7.94 -51.93 -0.41 0.40 16 32 H 0.17 1.24 8.06 -52.48 -0.42 0.82 16 33 H 0.18 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.12 1.33 8.12 -51.93 -0.42 0.91 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 1.40 8.11 -51.93 -0.42 0.98 16 LS Contribution 307.64 15.07 4.64 4.64 Total: -1.00 -30.71 307.64 -7.43 -38.14 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -4.51 Total: -1.87 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -2.45 Total: -3.28 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: -0.16 Total: -47.81 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 0.08 Total: -6.16 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.71 -7.43 -38.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148822698.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.734 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds