Wall clock time and date at job start Tue Mar 31 2020 05:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86801 * 120.00184 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99972 * 3 2 1 5 5 H 1.48504 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47038 * 119.99949 * 3 2 1 7 7 C 1.40114 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00253 * 180.02562 * 7 2 1 9 9 C 1.40831 * 119.99882 * 359.72246 * 7 2 1 10 10 N 1.33907 * 120.27734 * 0.27688 * 9 7 2 11 11 C 1.31714 * 119.89090 * 180.02562 * 10 9 7 12 12 C 1.38958 * 120.48147 * 0.02562 * 11 10 9 13 13 N 1.32244 * 120.56994 * 359.97438 * 12 11 10 14 14 C 1.32624 * 120.08043 * 359.70855 * 13 12 11 15 15 N 1.37945 * 120.23471 * 180.27717 * 14 13 12 16 16 C 1.46501 * 119.99983 * 0.29002 * 15 14 13 17 17 C 1.52994 * 109.47014 * 180.02562 * 16 15 14 18 18 H 1.09006 * 110.43532 * 307.53535 * 17 16 15 19 19 C 1.54268 * 110.48788 * 185.00323 * 17 16 15 20 20 C 1.53875 * 106.59678 * 217.71068 * 19 17 16 21 21 C 1.54266 * 106.60107 * 359.97438 * 20 19 17 22 22 F 1.39901 * 110.48304 * 142.28898 * 21 20 19 23 23 F 1.39895 * 110.48939 * 264.93712 * 21 20 19 24 24 C 1.54886 * 110.49057 * 70.22450 * 17 16 15 25 25 H 0.97009 * 120.00024 * 0.02562 * 1 2 3 26 26 H 1.08008 * 119.75514 * 179.97438 * 11 10 9 27 27 H 1.08001 * 119.71734 * 180.02562 * 12 11 10 28 28 H 0.97001 * 119.99811 * 180.29584 * 15 14 13 29 29 H 1.09004 * 109.46669 * 300.00036 * 16 15 14 30 30 H 1.09003 * 109.46943 * 59.99958 * 16 15 14 31 31 H 1.09002 * 110.03077 * 336.99128 * 19 17 16 32 32 H 1.09000 * 110.03455 * 98.42401 * 19 17 16 33 33 H 1.09005 * 110.03362 * 119.28081 * 20 19 17 34 34 H 1.08999 * 110.03143 * 240.70698 * 20 19 17 35 35 H 1.09004 * 110.75553 * 274.93751 * 24 17 16 36 36 H 1.08994 * 110.75626 * 38.30374 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6963 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0951 1.6963 1.2125 7 6 2.0079 -1.2134 -0.0005 8 1 3.0879 -1.2135 -0.0001 9 6 1.3037 -2.4330 0.0048 10 7 -0.0354 -2.4395 0.0049 11 6 -0.6863 -3.5845 0.0104 12 6 0.0065 -4.7891 0.0168 13 7 1.3288 -4.8045 0.0168 14 6 2.0069 -3.6647 0.0050 15 7 3.3862 -3.6771 -0.0008 16 6 4.1073 -4.9524 -0.0002 17 6 5.6139 -4.6864 -0.0066 18 1 5.8774 -4.0094 -0.8193 19 6 6.3955 -6.0104 -0.1321 20 6 7.6409 -5.8721 0.7611 21 6 7.5729 -4.4686 1.3977 22 9 8.0298 -4.5079 2.7195 23 9 8.3194 -3.5538 0.6473 24 6 6.0677 -4.1051 1.3555 25 1 -0.4850 0.8401 -0.0004 26 1 -1.7664 -3.5871 0.0108 27 1 -0.5397 -5.7208 0.0209 28 1 3.8787 -2.8415 -0.0051 29 1 3.8425 -5.5190 0.8926 30 1 3.8351 -5.5241 -0.8874 31 1 5.7798 -6.8415 0.2119 32 1 6.6948 -6.1706 -1.1679 33 1 7.6295 -6.6360 1.5386 34 1 8.5445 -5.9652 0.1588 35 1 5.9307 -3.0240 1.3790 36 1 5.5318 -4.5813 2.1765 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162641722.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:44 Heat of formation + Delta-G solvation = -84.147116 kcal Electronic energy + Delta-G solvation = -22017.356746 eV Core-core repulsion = 18363.694123 eV Total energy + Delta-G solvation = -3653.662623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.86787 -48.01914 -40.83895 -39.03675 -36.13162 -35.81901 -33.39285 -31.86280 -29.81886 -29.27230 -27.76468 -25.60719 -23.71828 -23.01486 -21.96712 -21.29514 -19.48260 -18.66060 -18.30453 -17.76626 -17.39639 -16.98720 -16.74719 -16.02966 -15.81616 -15.44793 -15.19225 -15.09009 -14.58403 -14.44263 -14.34367 -14.24474 -13.85199 -13.70160 -13.20414 -12.97749 -12.84950 -12.60151 -12.39480 -12.19660 -12.18018 -11.98188 -11.68417 -11.52822 -11.48490 -11.26202 -11.12323 -10.39097 -9.22744 -8.57791 -8.25665 -6.32194 0.82277 1.27677 1.42821 1.54210 1.56816 2.22287 2.67337 2.75967 2.89063 2.97772 3.22618 3.41618 3.93437 4.00612 4.07913 4.16163 4.27252 4.30998 4.33960 4.42043 4.49830 4.59915 4.68816 4.86921 4.90786 4.92885 4.98069 5.06496 5.15095 5.21547 5.24240 5.34921 5.82730 6.13128 6.31832 6.70975 6.80422 7.02555 7.63237 8.11726 8.43960 Molecular weight = 283.12amu Principal moments of inertia in cm(-1) A = 0.015745 B = 0.005080 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.894948 B = 5510.022833 C = 6954.529908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.023 3.977 3 Si 0.984 3.016 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.446 4.446 8 H 0.099 0.901 9 C 0.158 3.842 10 N -0.488 5.488 11 C 0.005 3.995 12 C -0.083 4.083 13 N -0.511 5.511 14 C 0.259 3.741 15 N -0.717 5.717 16 C 0.158 3.842 17 C -0.095 4.095 18 H 0.090 0.910 19 C -0.107 4.107 20 C -0.150 4.150 21 C 0.269 3.731 22 F -0.210 7.210 23 F -0.206 7.206 24 C -0.154 4.154 25 H 0.279 0.721 26 H 0.143 0.857 27 H 0.154 0.846 28 H 0.406 0.594 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.824 -7.270 0.452 15.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.379 5.379 2 C -0.199 4.199 3 Si 0.804 3.196 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.480 4.480 8 H 0.117 0.883 9 C 0.023 3.977 10 N -0.206 5.206 11 C -0.156 4.156 12 C -0.236 4.236 13 N -0.234 5.234 14 C 0.011 3.989 15 N -0.358 5.358 16 C 0.034 3.966 17 C -0.114 4.114 18 H 0.109 0.891 19 C -0.145 4.145 20 C -0.188 4.188 21 C 0.233 3.767 22 F -0.191 7.191 23 F -0.187 7.187 24 C -0.192 4.192 25 H 0.090 0.910 26 H 0.161 0.839 27 H 0.172 0.828 28 H 0.243 0.757 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.128 0.872 34 H 0.122 0.878 35 H 0.103 0.897 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 13.542 -7.398 0.470 15.438 hybrid contribution 0.020 1.152 0.189 1.167 sum 13.562 -6.246 0.659 14.945 Atomic orbital electron populations 1.70209 1.09024 1.29259 1.29371 1.26960 0.95647 1.04467 0.92813 0.85225 0.78614 0.75506 0.80230 1.18007 1.19740 1.18132 1.19627 0.94769 0.89743 1.43885 0.88331 1.19518 0.89748 0.92732 0.95658 1.69411 1.07286 1.26274 1.17638 1.23518 1.00789 0.90234 1.01063 1.22752 0.89745 0.98415 1.12693 1.67431 1.09267 1.28112 1.18541 1.19487 0.86812 0.90472 1.02094 1.43792 1.00541 1.08352 1.83140 1.21052 0.89280 0.85670 1.00634 1.22125 0.93759 0.98917 0.96562 0.89147 1.22080 0.94557 0.96544 1.01305 1.23115 1.01594 0.92652 1.01453 1.22286 0.89599 0.90912 0.73909 1.92974 1.90934 1.97118 1.38082 1.92984 1.79255 1.70101 1.76344 1.23531 0.91581 1.03691 1.00424 0.91009 0.83945 0.82849 0.75686 0.93341 0.93149 0.89185 0.88815 0.87182 0.87798 0.89713 0.88076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -40.27 11.48 21.85 0.25 -40.02 16 2 C 0.02 1.14 5.50 85.31 0.47 1.60 16 3 Si 0.98 36.58 29.56 68.60 2.03 38.61 16 4 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 5 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 6 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 7 C -0.45 -22.71 8.89 23.36 0.21 -22.50 16 8 H 0.10 4.44 6.12 -2.91 -0.02 4.42 16 9 C 0.16 8.57 6.56 40.35 0.26 8.83 16 10 N -0.49 -27.48 8.03 -188.05 -1.51 -28.99 16 11 C 0.01 0.27 11.21 84.88 0.95 1.22 16 12 C -0.08 -3.81 11.22 84.80 0.95 -2.85 16 13 N -0.51 -24.29 9.71 -190.82 -1.85 -26.14 16 14 C 0.26 12.48 7.51 134.03 1.01 13.48 16 15 N -0.72 -27.36 5.49 -343.39 -1.89 -29.25 16 16 C 0.16 4.67 4.98 86.38 0.43 5.10 16 17 C -0.09 -2.05 2.89 -9.72 -0.03 -2.07 16 18 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 19 C -0.11 -1.64 6.37 31.32 0.20 -1.44 16 20 C -0.15 -2.24 6.41 31.32 0.20 -2.04 16 21 C 0.27 5.76 2.49 31.68 0.08 5.83 16 22 F -0.21 -5.14 17.16 44.97 0.77 -4.37 16 23 F -0.21 -5.05 17.17 44.97 0.77 -4.28 16 24 C -0.15 -3.48 5.77 31.89 0.18 -3.30 16 25 H 0.28 13.54 8.29 -92.70 -0.77 12.77 16 26 H 0.14 6.20 8.06 -2.91 -0.02 6.18 16 27 H 0.15 5.91 8.06 -2.91 -0.02 5.89 16 28 H 0.41 14.66 6.42 -92.71 -0.60 14.07 16 29 H 0.05 1.50 8.02 -2.38 -0.02 1.48 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.09 1.28 7.84 -2.39 -0.02 1.26 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 33 H 0.11 1.36 8.11 -2.38 -0.02 1.34 16 34 H 0.10 1.29 8.12 -2.39 -0.02 1.27 16 35 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 36 H 0.10 2.31 7.96 -2.39 -0.02 2.29 16 Total: -1.00 -64.97 309.30 4.01 -60.96 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: 0.52 Total: 31.62 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 4.92 Total: 1.87 kcal Atomic # 7 Polarization: -119.41 SS G_CDS: -5.00 Total: -124.41 kcal Atomic # 9 Polarization: -10.20 SS G_CDS: 1.54 Total: -8.65 kcal Atomic # 14 Polarization: 36.58 SS G_CDS: 2.03 Total: 38.61 kcal Total: -64.97 4.01 -60.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162641722.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.186 kcal (2) G-P(sol) polarization free energy of solvation -64.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds