Wall clock time and date at job start Tue Mar 31 2020 05:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39904 * 109.52051 * 2 1 4 4 C 1.53103 * 109.52563 * 239.80581 * 2 1 3 5 5 C 1.53039 * 109.29042 * 182.42969 * 4 2 1 6 6 N 1.46846 * 109.51050 * 59.18721 * 5 4 2 7 7 C 1.38826 * 110.99867 * 174.16282 * 6 5 4 8 8 C 1.39961 * 119.97075 * 359.72528 * 7 6 5 9 9 N 1.32123 * 120.32160 * 179.75014 * 8 7 6 10 10 C 1.31936 * 120.27114 * 0.52506 * 9 8 7 11 11 C 1.40679 * 119.92909 * 359.73141 * 10 9 8 12 12 C 1.41277 * 120.15630 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99535 * 353.85409 * 12 11 10 14 14 C 1.40055 * 120.00297 * 173.85747 * 12 11 10 15 15 N 1.30733 * 119.99687 * 6.34506 * 14 12 11 16 16 Si 1.86805 * 120.00015 * 186.34477 * 14 12 11 17 17 H 1.48493 * 109.46806 * 59.99968 * 16 14 12 18 18 H 1.48496 * 109.46852 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46824 * 300.00004 * 16 14 12 20 20 N 1.32242 * 119.97083 * 179.97438 * 7 6 5 21 21 C 1.46847 * 111.20153 * 298.26173 * 6 5 4 22 22 C 1.53036 * 109.52221 * 61.73989 * 21 6 5 23 23 H 1.09000 * 109.49983 * 180.88060 * 22 21 6 24 24 F 1.39905 * 109.50286 * 60.76650 * 22 21 6 25 25 H 1.08999 * 109.46834 * 299.86372 * 1 2 3 26 26 H 1.08994 * 109.47603 * 59.87212 * 1 2 3 27 27 H 1.09002 * 109.47069 * 179.87529 * 1 2 3 28 28 H 1.09008 * 109.48542 * 62.49176 * 4 2 1 29 29 H 1.08998 * 109.50692 * 302.38812 * 4 2 1 30 30 H 1.09001 * 109.46445 * 299.17697 * 5 4 2 31 31 H 1.08994 * 109.45821 * 179.19742 * 5 4 2 32 32 H 1.08009 * 119.83879 * 0.02562 * 8 7 6 33 33 H 1.07995 * 120.03578 * 179.75191 * 10 9 8 34 34 H 0.96999 * 119.99479 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.46716 * 181.76227 * 21 6 5 36 36 H 1.09003 * 109.45740 * 301.73116 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9975 1.3186 0.0000 4 6 2.0417 -0.7257 -1.2472 5 6 3.5709 -0.7757 -1.2114 6 7 4.0103 -1.4788 0.0006 7 6 5.3870 -1.6573 0.0007 8 6 6.1526 -1.1903 -1.0739 9 7 7.4639 -1.3521 -1.0787 10 6 8.0622 -1.9647 -0.0749 11 6 7.3027 -2.4432 1.0082 12 6 7.9383 -3.1004 2.0853 13 1 8.9935 -3.3248 2.0339 14 6 7.2001 -3.4608 3.2196 15 7 5.9024 -3.3025 3.2324 16 14 8.0697 -4.1678 4.7142 17 1 9.0550 -3.1817 5.2258 18 1 7.0716 -4.4658 5.7725 19 1 8.7734 -5.4182 4.3318 20 7 5.9734 -2.2727 1.0137 21 6 3.5709 -0.7745 1.2120 22 6 2.0418 -0.7244 1.2481 23 1 1.7163 -0.1879 2.1394 24 9 1.5322 -2.0270 1.2740 25 1 -0.3633 0.5117 0.8912 26 1 -0.3634 0.5158 -0.8888 27 1 -0.3633 -1.0277 -0.0022 28 1 1.7159 -0.1901 -2.1389 29 1 1.6447 -1.7406 -1.2663 30 1 3.9674 0.2396 -1.2062 31 1 3.9376 -1.3044 -2.0911 32 1 5.6697 -0.6913 -1.9011 33 1 9.1338 -2.0984 -0.0847 34 1 5.3912 -3.5519 4.0182 35 1 3.9379 -1.3022 2.0923 36 1 3.9675 0.2408 1.2057 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164340654.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:50 Heat of formation + Delta-G solvation = -45.476690 kcal Electronic energy + Delta-G solvation = -23063.817263 eV Core-core repulsion = 19411.831516 eV Total energy + Delta-G solvation = -3651.985748 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.92392 -47.31907 -39.53274 -37.41899 -34.15482 -33.79731 -31.76146 -30.60287 -29.85134 -27.62149 -25.93381 -23.61804 -23.07283 -21.76112 -21.03200 -19.55182 -17.74035 -16.97150 -16.36366 -16.00754 -15.79603 -15.38654 -15.20245 -14.98155 -14.62879 -14.44894 -13.63366 -13.30471 -13.17401 -13.13138 -12.83608 -12.68173 -12.33445 -12.10654 -11.87497 -11.59519 -11.48490 -11.43060 -11.33845 -11.01960 -10.75799 -10.50798 -10.27121 -10.02878 -9.83632 -9.55284 -9.43863 -8.46850 -7.56145 -7.11458 -6.50253 -4.73482 2.47048 2.94227 3.00936 3.02661 3.17548 3.82517 4.00711 4.14508 4.33732 4.45630 4.58474 4.66915 4.89593 5.08603 5.22400 5.40409 5.42639 5.48205 5.64132 5.70572 5.84899 5.86095 5.90916 5.94374 6.04675 6.17473 6.29966 6.34116 6.45539 6.69539 6.92585 7.00353 7.40685 7.45574 7.82490 8.03056 8.43801 8.65839 9.26129 9.83362 10.10422 Molecular weight = 283.12amu Principal moments of inertia in cm(-1) A = 0.020946 B = 0.005814 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.442716 B = 4814.616794 C = 5825.887582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.090 3.910 3 F -0.199 7.199 4 C -0.135 4.135 5 C 0.054 3.946 6 N -0.466 5.466 7 C 0.290 3.710 8 C -0.159 4.159 9 N -0.415 5.415 10 C -0.085 4.085 11 C 0.227 3.773 12 C -0.410 4.410 13 H 0.091 0.909 14 C 0.066 3.934 15 N -0.704 5.704 16 Si 0.913 3.087 17 H -0.263 1.263 18 H -0.276 1.276 19 H -0.263 1.263 20 N -0.465 5.465 21 C 0.041 3.959 22 C 0.085 3.915 23 H 0.094 0.906 24 F -0.188 7.188 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.277 0.723 35 H 0.120 0.880 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.941 4.635 -1.531 11.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.071 3.929 3 F -0.180 7.180 4 C -0.173 4.173 5 C -0.074 4.074 6 N -0.184 5.184 7 C 0.048 3.952 8 C -0.320 4.320 9 N -0.127 5.127 10 C -0.255 4.255 11 C 0.099 3.901 12 C -0.442 4.442 13 H 0.109 0.891 14 C -0.161 4.161 15 N -0.324 5.324 16 Si 0.736 3.264 17 H -0.187 1.187 18 H -0.201 1.201 19 H -0.187 1.187 20 N -0.186 5.186 21 C -0.086 4.086 22 C 0.048 3.952 23 H 0.111 0.889 24 F -0.169 7.169 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.089 0.911 35 H 0.138 0.862 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.438 4.164 -1.404 11.325 hybrid contribution 0.611 0.340 0.626 0.939 sum -9.826 4.504 -0.778 10.837 Atomic orbital electron populations 1.22339 0.92757 1.04281 1.03482 1.21513 0.95269 0.78531 0.97574 1.92855 1.90353 1.37220 1.97568 1.22216 0.96467 1.02325 0.96286 1.22188 0.93875 0.97703 0.93590 1.58156 1.10905 1.47291 1.02060 1.20574 0.87815 0.93259 0.93530 1.22595 0.90877 1.15672 1.02828 1.67567 1.10183 1.09681 1.25243 1.23059 0.99508 1.08574 0.94375 1.19221 0.87796 0.90774 0.92268 1.19614 0.96605 1.29908 0.98072 0.89058 1.26148 0.94815 0.94767 1.00378 1.70085 1.06294 1.28165 1.27863 0.86293 0.79939 0.80210 0.79949 1.18749 1.20093 1.18722 1.69165 1.09796 1.16130 1.23545 1.22673 0.92094 0.98408 0.95442 1.22061 0.94951 0.80293 0.97919 0.88867 1.92840 1.88224 1.38337 1.97484 0.91331 0.91006 0.89914 0.89772 0.88656 0.93294 0.89124 0.85498 0.84991 0.91140 0.86155 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 8.80 37.16 0.33 -1.40 16 2 C 0.09 1.18 1.10 -90.51 -0.10 1.08 16 3 F -0.20 -2.88 15.98 2.25 0.04 -2.85 16 4 C -0.13 -1.78 5.03 -26.66 -0.13 -1.91 16 5 C 0.05 0.89 4.03 -3.83 -0.02 0.88 16 6 N -0.47 -9.54 4.66 -173.07 -0.81 -10.34 16 7 C 0.29 7.05 6.45 -155.01 -1.00 6.05 16 8 C -0.16 -3.79 10.00 -16.78 -0.17 -3.96 16 9 N -0.42 -10.49 10.47 -12.11 -0.13 -10.61 16 10 C -0.08 -2.16 10.97 -16.59 -0.18 -2.34 16 11 C 0.23 6.11 6.54 -84.83 -0.55 5.55 16 12 C -0.41 -10.47 9.15 -37.75 -0.35 -10.82 16 13 H 0.09 2.14 7.86 -52.49 -0.41 1.72 16 14 C 0.07 1.60 5.49 -17.34 -0.10 1.50 16 15 N -0.70 -17.81 11.51 55.55 0.64 -17.18 16 16 Si 0.91 17.70 29.57 -169.99 -5.03 12.67 16 17 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 18 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 19 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 20 N -0.46 -12.52 7.35 -10.14 -0.07 -12.60 16 21 C 0.04 0.78 4.98 -3.83 -0.02 0.76 16 22 C 0.09 1.29 3.39 -26.65 -0.09 1.20 16 23 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 24 F -0.19 -3.19 16.01 2.25 0.04 -3.15 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.81 7.75 -51.93 -0.40 0.41 16 28 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 29 H 0.09 1.27 7.91 -51.93 -0.41 0.86 16 30 H 0.05 0.82 7.47 -51.93 -0.39 0.43 16 31 H 0.09 1.46 6.95 -51.93 -0.36 1.10 16 32 H 0.13 2.66 5.78 -52.48 -0.30 2.35 16 33 H 0.13 3.04 8.06 -52.49 -0.42 2.61 16 34 H 0.28 6.39 8.29 -40.82 -0.34 6.05 16 35 H 0.12 2.63 7.59 -51.93 -0.39 2.24 16 36 H 0.05 0.98 7.88 -51.93 -0.41 0.57 16 LS Contribution 300.90 15.07 4.53 4.53 Total: -1.00 -29.52 300.90 -7.49 -37.02 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.33 Total: 5.91 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -2.38 Total: -3.41 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.37 Total: -50.73 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 0.07 Total: -6.00 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.52 -7.49 -37.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164340654.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.459 kcal (2) G-P(sol) polarization free energy of solvation -29.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds