Wall clock time and date at job start Tue Mar 31 2020 05:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39901 * 109.57318 * 2 1 4 4 C 1.53124 * 109.52013 * 120.15121 * 2 1 3 5 5 C 1.53037 * 109.27768 * 177.55836 * 4 2 1 6 6 N 1.46850 * 109.52314 * 300.82544 * 5 4 2 7 7 C 1.38834 * 110.99621 * 185.83678 * 6 5 4 8 8 C 1.39955 * 119.96667 * 235.76540 * 7 6 5 9 9 N 1.32126 * 120.31805 * 179.97438 * 8 7 6 10 10 C 1.31928 * 120.27070 * 359.76735 * 9 8 7 11 11 C 1.40684 * 119.93506 * 0.50641 * 10 9 8 12 12 C 1.41269 * 120.16018 * 179.75059 * 11 10 9 13 13 H 1.07996 * 119.99788 * 353.45554 * 12 11 10 14 14 C 1.40056 * 120.00090 * 173.18068 * 12 11 10 15 15 N 1.30737 * 119.99759 * 6.28373 * 14 12 11 16 16 Si 1.86796 * 120.00170 * 186.28279 * 14 12 11 17 17 H 1.48496 * 109.47315 * 90.00048 * 16 14 12 18 18 H 1.48497 * 109.47288 * 210.00195 * 16 14 12 19 19 H 1.48503 * 109.46834 * 329.99941 * 16 14 12 20 20 N 1.32231 * 119.96725 * 55.79237 * 7 6 5 21 21 C 1.46839 * 111.20045 * 61.73969 * 6 5 4 22 22 C 1.53035 * 109.52688 * 298.25953 * 21 6 5 23 23 H 1.08993 * 109.50999 * 179.12140 * 22 21 6 24 24 F 1.39903 * 109.49804 * 299.24011 * 22 21 6 25 25 H 1.08995 * 109.46944 * 180.16581 * 1 2 3 26 26 H 1.09005 * 109.46936 * 300.16275 * 1 2 3 27 27 H 1.09002 * 109.46967 * 60.16500 * 1 2 3 28 28 H 1.09002 * 109.50328 * 297.50117 * 4 2 1 29 29 H 1.08994 * 109.50256 * 57.58322 * 4 2 1 30 30 H 1.08995 * 109.46348 * 180.80276 * 5 4 2 31 31 H 1.09003 * 109.46257 * 60.83406 * 5 4 2 32 32 H 1.07999 * 119.84628 * 0.02562 * 8 7 6 33 33 H 1.08004 * 120.03912 * 180.26267 * 10 9 8 34 34 H 0.97004 * 119.99581 * 180.02562 * 15 14 12 35 35 H 1.09009 * 109.46357 * 58.27536 * 21 6 5 36 36 H 1.09000 * 109.46492 * 178.23922 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9987 1.3182 0.0000 4 6 2.0417 -0.7249 1.2480 5 6 3.5708 -0.7751 1.2118 6 7 4.0102 -1.4789 0.0002 7 6 5.3870 -1.6574 0.0003 8 6 6.1532 -1.1852 -1.0715 9 7 7.4640 -1.3509 -1.0783 10 6 8.0628 -1.9590 -0.0722 11 6 7.3027 -2.4431 1.0081 12 6 7.9383 -3.0996 2.0854 13 1 8.9932 -3.3251 2.0336 14 6 7.2017 -3.4530 3.2230 15 7 5.9050 -3.2875 3.2394 16 14 8.0720 -4.1607 4.7166 17 1 8.4740 -3.0565 5.6246 18 1 7.1545 -5.0821 5.4338 19 1 9.2795 -4.9060 4.2789 20 7 5.9731 -2.2737 1.0128 21 6 3.5708 -0.7753 -1.2114 22 6 2.0417 -0.7251 -1.2477 23 1 1.7162 -0.1892 -2.1392 24 9 1.5322 -2.0278 -1.2728 25 1 -0.3633 -1.0276 0.0030 26 1 -0.3633 0.5164 0.8886 27 1 -0.3633 0.5113 -0.8915 28 1 1.7161 -0.1888 2.1394 29 1 1.6441 -1.7396 1.2680 30 1 3.9377 -1.3031 2.0919 31 1 3.9674 0.2402 1.2060 32 1 5.6709 -0.6823 -1.8966 33 1 9.1350 -2.0886 -0.0797 34 1 5.3948 -3.5319 4.0275 35 1 3.9675 0.2400 -1.2059 36 1 3.9379 -1.3036 -2.0914 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164340656.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:54 Heat of formation + Delta-G solvation = -45.670850 kcal Electronic energy + Delta-G solvation = -23016.311638 eV Core-core repulsion = 19364.317471 eV Total energy + Delta-G solvation = -3651.994167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.119 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -47.95727 -47.42320 -39.53159 -37.40872 -34.19646 -33.76793 -31.82471 -30.57132 -29.84752 -27.60396 -25.95739 -23.63947 -23.05673 -21.77120 -21.05129 -19.56282 -17.76293 -17.01506 -16.51329 -16.02835 -15.63731 -15.39528 -15.20359 -14.94350 -14.74021 -14.29764 -13.77125 -13.57863 -13.24441 -13.11901 -12.80196 -12.65006 -12.31416 -12.05377 -11.83519 -11.54808 -11.45823 -11.42095 -11.36226 -11.13857 -10.77480 -10.47400 -10.23501 -10.05555 -9.86296 -9.55185 -9.45843 -8.47179 -7.56459 -7.12158 -6.51221 -4.74220 2.46486 2.92973 3.00800 3.03869 3.16367 3.81842 3.95622 4.11660 4.31456 4.47519 4.58026 4.63651 4.77761 5.05319 5.22197 5.43675 5.48119 5.50947 5.63182 5.73477 5.76082 5.85537 5.86919 5.93937 6.08775 6.17414 6.33959 6.37769 6.48389 6.73415 6.92456 6.99565 7.41302 7.45098 7.81870 8.03012 8.43107 8.65345 9.25425 9.82692 10.09419 Molecular weight = 283.12amu Principal moments of inertia in cm(-1) A = 0.021749 B = 0.005499 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.085350 B = 5090.654429 C = 5874.836157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.090 3.910 3 F -0.199 7.199 4 C -0.135 4.135 5 C 0.065 3.935 6 N -0.465 5.465 7 C 0.292 3.708 8 C -0.161 4.161 9 N -0.415 5.415 10 C -0.084 4.084 11 C 0.227 3.773 12 C -0.410 4.410 13 H 0.092 0.908 14 C 0.066 3.934 15 N -0.704 5.704 16 Si 0.913 3.087 17 H -0.268 1.268 18 H -0.275 1.275 19 H -0.259 1.259 20 N -0.464 5.464 21 C 0.029 3.971 22 C 0.085 3.915 23 H 0.096 0.904 24 F -0.190 7.190 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.037 0.963 32 H 0.126 0.874 33 H 0.133 0.867 34 H 0.276 0.724 35 H 0.064 0.936 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.922 4.631 -1.720 11.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.071 3.929 3 F -0.180 7.180 4 C -0.173 4.173 5 C -0.061 4.061 6 N -0.184 5.184 7 C 0.050 3.950 8 C -0.322 4.322 9 N -0.126 5.126 10 C -0.255 4.255 11 C 0.100 3.900 12 C -0.442 4.442 13 H 0.110 0.890 14 C -0.161 4.161 15 N -0.325 5.325 16 Si 0.736 3.264 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.183 1.183 20 N -0.186 5.186 21 C -0.099 4.099 22 C 0.048 3.952 23 H 0.114 0.886 24 F -0.170 7.170 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.131 0.869 31 H 0.055 0.945 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.416 4.152 -1.592 11.326 hybrid contribution 0.606 0.357 0.563 0.901 sum -9.810 4.509 -1.029 10.846 Atomic orbital electron populations 1.22339 0.92745 1.04281 1.03481 1.21525 0.95261 0.78536 0.97578 1.92854 1.90305 1.37271 1.97568 1.22245 0.97013 1.02187 0.95887 1.22108 0.93125 0.96952 0.93911 1.58179 1.10931 1.47201 1.02068 1.20561 0.87802 0.93212 0.93449 1.22577 0.90981 1.15695 1.02921 1.67556 1.10180 1.09733 1.25164 1.23064 0.99475 1.08601 0.94350 1.19232 0.87800 0.90696 0.92303 1.19649 0.96687 1.29953 0.97888 0.89003 1.26149 0.94819 0.94730 1.00397 1.70099 1.06377 1.28361 1.27619 0.86230 0.80222 0.79430 0.80474 1.19259 1.20003 1.18316 1.69159 1.09813 1.16307 1.23302 1.22765 0.92852 0.99192 0.95110 1.22061 0.94430 0.80331 0.98360 0.88625 1.92840 1.88276 1.38385 1.97520 0.89910 0.90930 0.91405 0.89916 0.88619 0.86859 0.94499 0.85634 0.84973 0.91239 0.91745 0.88372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 8.80 37.16 0.33 -1.40 16 2 C 0.09 1.18 1.10 -90.49 -0.10 1.08 16 3 F -0.20 -2.88 15.97 2.25 0.04 -2.85 16 4 C -0.14 -1.98 5.04 -26.65 -0.13 -2.11 16 5 C 0.07 1.23 5.23 -3.83 -0.02 1.21 16 6 N -0.47 -9.53 4.66 -173.07 -0.81 -10.34 16 7 C 0.29 7.09 6.45 -155.02 -1.00 6.09 16 8 C -0.16 -3.84 10.00 -16.78 -0.17 -4.01 16 9 N -0.41 -10.48 10.47 -12.11 -0.13 -10.61 16 10 C -0.08 -2.15 10.97 -16.59 -0.18 -2.33 16 11 C 0.23 6.11 6.54 -84.83 -0.55 5.55 16 12 C -0.41 -10.44 9.15 -37.75 -0.35 -10.79 16 13 H 0.09 2.15 7.85 -52.49 -0.41 1.74 16 14 C 0.07 1.59 5.49 -17.34 -0.10 1.50 16 15 N -0.70 -17.66 11.51 55.55 0.64 -17.02 16 16 Si 0.91 17.62 29.56 -169.99 -5.03 12.59 16 17 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 18 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 19 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 20 N -0.46 -12.48 7.35 -10.14 -0.07 -12.56 16 21 C 0.03 0.49 3.78 -3.84 -0.01 0.47 16 22 C 0.09 1.17 3.39 -26.65 -0.09 1.08 16 23 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 24 F -0.19 -2.94 16.01 2.25 0.04 -2.90 16 25 H 0.08 0.81 7.75 -51.93 -0.40 0.41 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.10 1.43 7.91 -51.93 -0.41 1.02 16 30 H 0.11 2.45 7.59 -51.93 -0.39 2.05 16 31 H 0.04 0.71 7.88 -51.93 -0.41 0.30 16 32 H 0.13 2.62 5.78 -52.49 -0.30 2.32 16 33 H 0.13 3.04 8.06 -52.48 -0.42 2.61 16 34 H 0.28 6.26 8.29 -40.82 -0.34 5.92 16 35 H 0.06 1.05 7.45 -51.92 -0.39 0.66 16 36 H 0.10 1.61 6.96 -51.93 -0.36 1.25 16 LS Contribution 300.90 15.07 4.53 4.53 Total: -1.00 -29.41 300.90 -7.49 -36.91 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -4.33 Total: 5.89 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -2.38 Total: -3.65 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: -0.37 Total: -50.53 kcal Atomic # 9 Polarization: -5.82 SS G_CDS: 0.07 Total: -5.75 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.59 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.41 -7.49 -36.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164340656.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.762 kcal (2) G-P(sol) polarization free energy of solvation -29.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds