Wall clock time and date at job start Tue Mar 31 2020 05:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86800 * 120.00284 * 2 1 4 4 H 1.48501 * 109.47354 * 240.00932 * 3 2 1 5 5 H 1.48507 * 109.46875 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47379 * 120.00292 * 3 2 1 7 7 C 1.40026 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00157 * 163.07923 * 7 2 1 9 9 C 1.41556 * 119.99606 * 342.79669 * 7 2 1 10 10 C 1.41191 * 120.98960 * 156.75612 * 9 7 2 11 11 C 1.36556 * 119.14287 * 180.02562 * 10 9 7 12 12 N 1.32100 * 121.27016 * 0.02562 * 11 10 9 13 13 C 1.32532 * 122.21656 * 359.97438 * 12 11 10 14 14 N 1.39082 * 119.65662 * 179.97438 * 13 12 11 15 15 C 1.47690 * 110.99496 * 128.64412 * 14 13 12 16 16 C 1.50782 * 108.08883 * 151.99217 * 15 14 13 17 17 N 1.47744 * 111.91365 * 94.61080 * 16 15 14 18 18 C 1.48069 * 113.79092 * 318.87229 * 17 16 15 19 19 C 1.50749 * 112.93306 * 318.28483 * 18 17 16 20 20 F 1.39896 * 109.55914 * 332.81248 * 19 18 17 21 21 F 1.39899 * 109.55330 * 212.48761 * 19 18 17 22 22 C 1.40080 * 110.99993 * 0.02562 * 14 13 12 23 23 C 1.38746 * 120.68266 * 359.72123 * 13 12 11 24 24 H 0.97000 * 120.00382 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.42935 * 359.97438 * 10 9 7 26 26 H 1.08004 * 119.36779 * 180.02562 * 11 10 9 27 27 H 1.09001 * 109.73780 * 271.63475 * 15 14 13 28 28 H 1.08994 * 109.73946 * 32.34013 * 15 14 13 29 29 H 1.08998 * 108.99502 * 333.98346 * 16 15 14 30 30 H 1.08998 * 108.92170 * 215.19081 * 16 15 14 31 31 H 1.00903 * 110.99413 * 192.80425 * 17 16 15 32 32 H 1.09002 * 108.78860 * 197.39384 * 18 17 16 33 33 H 1.08994 * 108.78954 * 79.17475 * 18 17 16 34 34 H 1.09009 * 109.07000 * 308.67024 * 22 14 13 35 35 H 1.09000 * 109.07343 * 67.62413 * 22 14 13 36 36 H 1.08004 * 120.66647 * 180.29015 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0951 1.6965 -1.2126 5 1 1.2764 2.7465 0.0006 6 1 3.0953 1.6963 1.2124 7 6 2.0076 -1.2126 -0.0005 8 1 3.0525 -1.2328 -0.2728 9 6 1.3472 -2.4113 0.3615 10 6 1.8273 -3.6657 -0.0736 11 6 1.1606 -4.7981 0.2977 12 7 0.0785 -4.7402 1.0532 13 6 -0.4172 -3.5915 1.4905 14 7 -1.5603 -3.5925 2.2829 15 6 -1.3506 -2.8057 3.5150 16 6 -2.6863 -2.2633 3.9571 17 7 -3.3332 -3.1382 4.9565 18 6 -3.2006 -4.5829 4.6607 19 6 -3.3970 -4.9040 3.2009 20 9 -4.2268 -3.9409 2.6171 21 9 -3.9823 -6.1684 3.0743 22 6 -2.0216 -4.8977 2.4970 23 6 0.1953 -2.3884 1.1704 24 1 -0.4851 0.8400 0.0004 25 1 2.7100 -3.7288 -0.6927 26 1 1.5249 -5.7597 -0.0328 27 1 -0.9370 -3.4456 4.2945 28 1 -0.6669 -1.9812 3.3135 29 1 -3.3384 -2.1747 3.0882 30 1 -2.5397 -1.2750 4.3927 31 1 -4.3006 -2.8832 5.0879 32 1 -3.9417 -5.1301 5.2434 33 1 -2.2067 -4.9133 4.9622 34 1 -2.1108 -5.4059 1.5367 35 1 -1.3017 -5.4328 3.1162 36 1 -0.2063 -1.4528 1.5308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164497399.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:26 Heat of formation + Delta-G solvation = -40.667775 kcal Electronic energy + Delta-G solvation = -23071.119154 eV Core-core repulsion = 19419.341936 eV Total energy + Delta-G solvation = -3651.777218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.82815 -46.84148 -39.70227 -37.53899 -35.04585 -33.99827 -31.54477 -30.61781 -29.23758 -26.75473 -26.22026 -25.36462 -21.87454 -21.72119 -20.54605 -20.10808 -18.08436 -17.19530 -16.90996 -16.47320 -16.27164 -15.52655 -15.16721 -14.62876 -14.50709 -14.27311 -14.15722 -13.54388 -13.24855 -13.11069 -12.87917 -12.73749 -12.59024 -12.29890 -12.15600 -11.82567 -11.51571 -11.38896 -11.29944 -11.06291 -10.82317 -10.54774 -10.32006 -10.01442 -9.48658 -8.98013 -8.51874 -8.16188 -8.06384 -7.03197 -6.87460 -4.66804 2.64926 2.76265 2.98606 3.00485 3.17674 3.74508 3.80526 3.93809 4.10507 4.25757 4.48718 4.57114 4.97911 5.18003 5.33094 5.44618 5.53862 5.61801 5.71040 5.74406 5.83396 6.04170 6.22852 6.28420 6.51338 6.71167 6.76614 6.83015 6.97846 7.08827 7.19919 7.36617 7.51340 7.59509 7.83254 8.15422 8.47531 8.68038 8.69356 9.46778 10.00840 Molecular weight = 283.12amu Principal moments of inertia in cm(-1) A = 0.022299 B = 0.005513 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.359166 B = 5077.788398 C = 5923.450722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.078 3.922 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.453 4.453 8 H 0.082 0.918 9 C 0.139 3.861 10 C -0.283 4.283 11 C 0.120 3.880 12 N -0.610 5.610 13 C 0.294 3.706 14 N -0.483 5.483 15 C 0.059 3.941 16 C 0.044 3.956 17 N -0.681 5.681 18 C 0.018 3.982 19 C 0.255 3.745 20 F -0.190 7.190 21 F -0.199 7.199 22 C 0.055 3.945 23 C -0.223 4.223 24 H 0.285 0.715 25 H 0.101 0.899 26 H 0.120 0.880 27 H 0.053 0.947 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.347 0.653 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.058 0.942 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.647 -2.703 7.763 9.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.483 4.483 8 H 0.100 0.900 9 C 0.131 3.869 10 C -0.307 4.307 11 C -0.033 4.033 12 N -0.331 5.331 13 C 0.070 3.930 14 N -0.201 5.201 15 C -0.067 4.067 16 C -0.085 4.085 17 N -0.311 5.311 18 C -0.113 4.113 19 C 0.216 3.784 20 F -0.172 7.172 21 F -0.180 7.180 22 C -0.076 4.076 23 C -0.248 4.248 24 H 0.096 0.904 25 H 0.119 0.881 26 H 0.138 0.862 27 H 0.071 0.929 28 H 0.121 0.879 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.165 0.835 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.076 0.924 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.167 -3.104 8.166 10.150 hybrid contribution 0.449 0.972 -0.877 1.384 sum -4.718 -2.132 7.289 8.941 Atomic orbital electron populations 1.69784 1.07634 1.29793 1.32849 1.25989 0.94776 1.01540 0.91989 0.86321 0.80179 0.79881 0.80160 1.18834 1.20129 1.18651 1.19582 0.97950 0.90811 1.40005 0.89998 1.17680 0.90195 0.92234 0.86841 1.21575 1.05319 0.93938 1.09820 1.21312 0.90974 0.96829 0.94201 1.67104 1.16699 1.27925 1.21362 1.19131 0.88199 0.90602 0.95039 1.56178 1.30175 1.15336 1.18376 1.22190 0.97246 0.98489 0.88744 1.22080 0.95910 0.95920 0.94540 1.60561 1.21490 1.00754 1.48288 1.22893 1.05421 0.91669 0.91288 1.22032 0.87908 0.72284 0.96135 1.92947 1.74416 1.63278 1.86512 1.92988 1.85928 1.41988 1.97145 1.21596 0.91186 0.91751 1.03041 1.21600 1.01233 0.96034 1.05929 0.90402 0.88117 0.86204 0.92925 0.87949 0.91159 0.89826 0.83532 0.89029 0.88382 0.87723 0.92380 0.85060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.07 10.92 55.55 0.61 -18.46 16 2 C 0.08 1.84 5.19 -17.35 -0.09 1.75 16 3 Si 0.91 17.58 29.59 -169.99 -5.03 12.55 16 4 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.45 -11.39 9.12 -37.65 -0.34 -11.73 16 8 H 0.08 1.97 7.90 -52.49 -0.41 1.55 16 9 C 0.14 3.57 5.61 -106.55 -0.60 2.97 16 10 C -0.28 -6.70 9.85 -39.07 -0.38 -7.09 16 11 C 0.12 2.69 11.10 -18.04 -0.20 2.49 16 12 N -0.61 -14.19 8.54 -12.82 -0.11 -14.30 16 13 C 0.29 6.85 6.44 -154.98 -1.00 5.85 16 14 N -0.48 -9.57 3.76 -178.05 -0.67 -10.24 16 15 C 0.06 1.00 5.19 -4.50 -0.02 0.98 16 16 C 0.04 0.64 6.00 -4.47 -0.03 0.61 16 17 N -0.68 -8.53 6.69 -114.71 -0.77 -9.30 16 18 C 0.02 0.23 5.71 -4.31 -0.02 0.21 16 19 C 0.26 3.96 2.11 -27.06 -0.06 3.91 16 20 F -0.19 -3.28 13.97 2.25 0.03 -3.24 16 21 F -0.20 -3.11 17.01 2.25 0.04 -3.07 16 22 C 0.05 0.99 3.83 -6.55 -0.03 0.96 16 23 C -0.22 -5.56 7.59 -38.44 -0.29 -5.85 16 24 H 0.28 6.37 8.29 -40.82 -0.34 6.04 16 25 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 26 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 27 H 0.05 0.85 6.77 -51.93 -0.35 0.50 16 28 H 0.10 1.87 6.02 -51.93 -0.31 1.56 16 29 H 0.07 1.16 5.99 -51.93 -0.31 0.85 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.35 3.78 8.91 -39.29 -0.35 3.43 16 32 H 0.09 0.97 8.04 -51.93 -0.42 0.55 16 33 H 0.10 1.23 6.52 -51.93 -0.34 0.89 16 34 H 0.10 2.10 7.45 -51.92 -0.39 1.71 16 35 H 0.06 1.02 7.56 -51.93 -0.39 0.63 16 36 H 0.13 3.33 5.18 -52.48 -0.27 3.05 16 LS Contribution 292.46 15.07 4.41 4.41 Total: -1.00 -27.07 292.46 -8.51 -35.58 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -3.95 Total: 11.02 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -3.06 Total: -4.93 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.94 Total: -52.30 kcal Atomic # 9 Polarization: -6.39 SS G_CDS: 0.07 Total: -6.32 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.07 -8.51 -35.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164497399.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.092 kcal (2) G-P(sol) polarization free energy of solvation -27.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds