Wall clock time and date at job start Tue Mar 31 2020 05:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86800 * 120.00284 * 2 1 4 4 H 1.48501 * 109.47354 * 240.00932 * 3 2 1 5 5 H 1.48507 * 109.46875 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47379 * 120.00292 * 3 2 1 7 7 C 1.40026 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00157 * 163.07923 * 7 2 1 9 9 C 1.41556 * 119.99606 * 342.79669 * 7 2 1 10 10 C 1.41191 * 120.98960 * 156.75612 * 9 7 2 11 11 C 1.36556 * 119.14287 * 180.02562 * 10 9 7 12 12 N 1.32100 * 121.27016 * 0.02562 * 11 10 9 13 13 C 1.32532 * 122.21656 * 359.97438 * 12 11 10 14 14 N 1.39082 * 119.65662 * 179.97438 * 13 12 11 15 15 C 1.47690 * 110.99496 * 128.64412 * 14 13 12 16 16 C 1.50782 * 108.08883 * 151.99217 * 15 14 13 17 17 N 1.47744 * 111.91365 * 94.61080 * 16 15 14 18 18 C 1.48069 * 113.79092 * 318.87229 * 17 16 15 19 19 C 1.50749 * 112.93306 * 318.28483 * 18 17 16 20 20 F 1.39896 * 109.55914 * 332.81248 * 19 18 17 21 21 F 1.39899 * 109.55330 * 212.48761 * 19 18 17 22 22 C 1.40080 * 110.99993 * 0.02562 * 14 13 12 23 23 C 1.38746 * 120.68266 * 359.72123 * 13 12 11 24 24 H 0.97000 * 120.00382 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.42935 * 359.97438 * 10 9 7 26 26 H 1.08004 * 119.36779 * 180.02562 * 11 10 9 27 27 H 1.09001 * 109.73780 * 271.63475 * 15 14 13 28 28 H 1.08994 * 109.73946 * 32.34013 * 15 14 13 29 29 H 1.08998 * 108.99502 * 333.98346 * 16 15 14 30 30 H 1.08998 * 108.92170 * 215.19081 * 16 15 14 31 31 H 1.00903 * 110.99413 * 192.80425 * 17 16 15 32 32 H 1.09002 * 108.78860 * 197.39384 * 18 17 16 33 33 H 1.08994 * 108.78954 * 79.17475 * 18 17 16 34 34 H 1.09009 * 109.07000 * 308.67024 * 22 14 13 35 35 H 1.09000 * 109.07343 * 67.62413 * 22 14 13 36 36 H 1.08004 * 120.66647 * 180.29015 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0951 1.6965 -1.2126 5 1 1.2764 2.7465 0.0006 6 1 3.0953 1.6963 1.2124 7 6 2.0076 -1.2126 -0.0005 8 1 3.0525 -1.2328 -0.2728 9 6 1.3472 -2.4113 0.3615 10 6 1.8273 -3.6657 -0.0736 11 6 1.1606 -4.7981 0.2977 12 7 0.0785 -4.7402 1.0532 13 6 -0.4172 -3.5915 1.4905 14 7 -1.5603 -3.5925 2.2829 15 6 -1.3506 -2.8057 3.5150 16 6 -2.6863 -2.2633 3.9571 17 7 -3.3332 -3.1382 4.9565 18 6 -3.2006 -4.5829 4.6607 19 6 -3.3970 -4.9040 3.2009 20 9 -4.2268 -3.9409 2.6171 21 9 -3.9823 -6.1684 3.0743 22 6 -2.0216 -4.8977 2.4970 23 6 0.1953 -2.3884 1.1704 24 1 -0.4851 0.8400 0.0004 25 1 2.7100 -3.7288 -0.6927 26 1 1.5249 -5.7597 -0.0328 27 1 -0.9370 -3.4456 4.2945 28 1 -0.6669 -1.9812 3.3135 29 1 -3.3384 -2.1747 3.0882 30 1 -2.5397 -1.2750 4.3927 31 1 -4.3006 -2.8832 5.0879 32 1 -3.9417 -5.1301 5.2434 33 1 -2.2067 -4.9133 4.9622 34 1 -2.1108 -5.4059 1.5367 35 1 -1.3017 -5.4328 3.1162 36 1 -0.2063 -1.4528 1.5308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164497399.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:25 Heat of formation + Delta-G solvation = -57.751540 kcal Electronic energy + Delta-G solvation = -23071.859961 eV Core-core repulsion = 19419.341936 eV Total energy + Delta-G solvation = -3652.518025 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.11403 -48.13361 -41.32407 -39.09342 -36.46702 -35.71111 -32.92689 -32.37989 -30.88306 -28.23043 -27.82576 -26.84643 -23.59913 -23.23912 -21.97686 -21.56581 -19.70983 -18.65071 -18.32099 -17.80167 -17.44542 -17.21343 -16.80984 -16.05166 -16.01361 -15.84034 -15.74440 -14.93647 -14.73253 -14.56595 -14.44746 -14.25717 -13.94380 -13.71835 -13.52208 -13.18399 -13.03436 -12.92674 -12.74407 -12.64081 -12.32748 -12.02469 -11.96703 -11.62719 -11.24242 -10.61822 -10.01028 -9.93228 -9.61016 -8.77410 -8.64659 -6.57138 0.84871 0.98649 1.40077 1.51450 1.57111 2.18537 2.33322 2.67749 2.79231 2.87660 3.02045 3.29749 3.63052 3.75371 3.93368 4.05203 4.22304 4.24083 4.32052 4.37821 4.52953 4.65060 4.76218 4.89464 4.92995 5.03497 5.05472 5.20356 5.23101 5.52518 5.63698 5.78078 5.94181 6.05231 6.25618 6.32770 6.64477 6.81719 6.82826 7.64640 8.24288 Molecular weight = 283.12amu Principal moments of inertia in cm(-1) A = 0.022299 B = 0.005513 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.359166 B = 5077.788398 C = 5923.450722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.040 3.960 3 Si 0.985 3.015 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.483 4.483 8 H 0.084 0.916 9 C 0.109 3.891 10 C -0.300 4.300 11 C 0.118 3.882 12 N -0.617 5.617 13 C 0.294 3.706 14 N -0.489 5.489 15 C 0.063 3.937 16 C 0.053 3.947 17 N -0.670 5.670 18 C 0.022 3.978 19 C 0.261 3.739 20 F -0.201 7.201 21 F -0.198 7.198 22 C 0.055 3.945 23 C -0.244 4.244 24 H 0.292 0.708 25 H 0.113 0.887 26 H 0.155 0.845 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.101 0.899 31 H 0.361 0.639 32 H 0.121 0.879 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.930 -2.430 9.047 10.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.178 4.178 3 Si 0.805 3.195 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.513 4.513 8 H 0.102 0.898 9 C 0.101 3.899 10 C -0.324 4.324 11 C -0.034 4.034 12 N -0.338 5.338 13 C 0.069 3.931 14 N -0.207 5.207 15 C -0.062 4.062 16 C -0.076 4.076 17 N -0.301 5.301 18 C -0.108 4.108 19 C 0.222 3.778 20 F -0.182 7.182 21 F -0.179 7.179 22 C -0.075 4.075 23 C -0.270 4.270 24 H 0.103 0.897 25 H 0.131 0.869 26 H 0.172 0.828 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.069 0.931 30 H 0.119 0.881 31 H 0.180 0.820 32 H 0.140 0.860 33 H 0.121 0.879 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.475 -2.846 9.465 11.299 hybrid contribution 0.488 0.797 -1.306 1.606 sum -4.986 -2.049 8.159 9.779 Atomic orbital electron populations 1.69840 1.09127 1.31142 1.33001 1.26838 0.95459 1.04651 0.90843 0.85206 0.78793 0.75270 0.80234 1.18343 1.19106 1.18186 1.19876 0.98316 0.91825 1.41327 0.89777 1.18113 0.90948 0.93418 0.87433 1.21783 1.06155 0.93848 1.10567 1.21850 0.90385 0.97989 0.93220 1.67252 1.17056 1.27773 1.21748 1.19412 0.88628 0.90183 0.94902 1.56161 1.28647 1.16458 1.19449 1.22193 0.98587 0.97738 0.87702 1.21917 0.94151 0.97032 0.94457 1.60555 1.22407 1.00418 1.46752 1.22960 1.06781 0.91931 0.89177 1.22083 0.86091 0.72121 0.97489 1.92934 1.74574 1.63735 1.86957 1.92992 1.85732 1.41972 1.97249 1.21573 0.93099 0.90607 1.02243 1.21538 1.02028 0.96234 1.07153 0.89671 0.86905 0.82828 0.91791 0.89690 0.93085 0.88100 0.82017 0.86038 0.87879 0.90283 0.91829 0.86181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.33 10.92 21.84 0.24 -40.09 16 2 C 0.04 1.92 5.19 85.29 0.44 2.36 16 3 Si 0.98 35.82 29.59 68.60 2.03 37.85 16 4 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 5 H -0.27 -9.19 7.11 99.48 0.71 -8.49 16 6 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 7 C -0.48 -24.84 9.12 23.52 0.21 -24.63 16 8 H 0.08 4.12 7.90 -2.91 -0.02 4.09 16 9 C 0.11 5.76 5.61 -21.12 -0.12 5.64 16 10 C -0.30 -14.41 9.85 22.60 0.22 -14.18 16 11 C 0.12 5.29 11.10 84.26 0.94 6.22 16 12 N -0.62 -28.85 8.54 -194.46 -1.66 -30.51 16 13 C 0.29 13.93 6.44 132.90 0.86 14.78 16 14 N -0.49 -19.49 3.76 -717.24 -2.70 -22.19 16 15 C 0.06 2.11 5.19 85.43 0.44 2.55 16 16 C 0.05 1.47 6.00 85.42 0.51 1.98 16 17 N -0.67 -14.97 6.69 -516.84 -3.46 -18.43 16 18 C 0.02 0.51 5.71 85.35 0.49 0.99 16 19 C 0.26 7.71 2.11 30.38 0.06 7.77 16 20 F -0.20 -6.70 13.97 44.97 0.63 -6.07 16 21 F -0.20 -5.85 17.01 44.97 0.76 -5.08 16 22 C 0.06 1.97 3.83 88.05 0.34 2.30 16 23 C -0.24 -12.56 7.59 23.01 0.17 -12.39 16 24 H 0.29 13.20 8.29 -92.71 -0.77 12.43 16 25 H 0.11 4.98 8.06 -2.91 -0.02 4.95 16 26 H 0.15 5.67 8.06 -2.91 -0.02 5.65 16 27 H 0.06 2.00 6.77 -2.39 -0.02 1.98 16 28 H 0.08 3.17 6.02 -2.39 -0.01 3.15 16 29 H 0.05 1.64 5.99 -2.39 -0.01 1.63 16 30 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.36 6.72 8.91 -89.69 -0.80 5.92 16 32 H 0.12 2.08 8.04 -2.39 -0.02 2.07 16 33 H 0.10 2.27 6.52 -2.39 -0.02 2.26 16 34 H 0.08 3.21 7.45 -2.38 -0.02 3.19 16 35 H 0.06 2.19 7.56 -2.39 -0.02 2.17 16 36 H 0.12 6.34 5.18 -2.91 -0.02 6.32 16 Total: -1.00 -58.97 292.46 0.75 -58.22 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 0.33 Total: 32.88 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 4.57 Total: -6.58 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -7.58 Total: -111.21 kcal Atomic # 9 Polarization: -12.54 SS G_CDS: 1.39 Total: -11.15 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 2.03 Total: 37.85 kcal Total: -58.97 0.75 -58.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164497399.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.465 kcal (2) G-P(sol) polarization free energy of solvation -58.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds