Wall clock time and date at job start Tue Mar 31 2020 05:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99756 * 2 1 4 4 H 1.48499 * 109.47055 * 239.99923 * 3 2 1 5 5 H 1.48493 * 109.47501 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47148 * 120.00186 * 3 2 1 7 7 C 1.37874 * 120.00007 * 180.02562 * 2 1 3 8 8 C 1.51267 * 120.84868 * 180.02562 * 7 2 1 9 9 C 1.53248 * 108.48161 * 231.36519 * 8 7 2 10 10 C 1.52957 * 109.39852 * 305.26512 * 9 8 7 11 11 H 1.08998 * 109.41181 * 303.63506 * 10 9 8 12 12 N 1.46498 * 109.41536 * 183.77358 * 10 9 8 13 13 C 1.39006 * 119.99551 * 84.58265 * 12 10 9 14 14 N 1.32671 * 120.09747 * 0.27474 * 13 12 10 15 15 C 1.32226 * 119.91601 * 179.97438 * 14 13 12 16 16 C 1.38207 * 120.10113 * 0.02562 * 15 14 13 17 17 N 1.32248 * 120.18873 * 359.97438 * 16 15 14 18 18 C 1.31950 * 120.08822 * 359.73556 * 17 16 15 19 19 C 1.50700 * 120.05551 * 180.27809 * 18 17 16 20 20 F 1.39894 * 109.47221 * 120.24393 * 19 18 17 21 21 F 1.39895 * 109.47079 * 240.24355 * 19 18 17 22 22 C 1.52964 * 109.75939 * 63.70404 * 10 9 8 23 23 C 1.51268 * 120.84999 * 0.02562 * 7 2 1 24 24 H 0.97004 * 120.00188 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.62575 * 351.03663 * 8 7 2 26 26 H 1.08997 * 109.62576 * 111.42158 * 8 7 2 27 27 H 1.09003 * 109.42268 * 185.32233 * 9 8 7 28 28 H 1.09003 * 109.54038 * 65.28106 * 9 8 7 29 29 H 0.97001 * 120.00384 * 264.86560 * 12 10 9 30 30 H 1.07999 * 119.95095 * 180.02562 * 15 14 13 31 31 H 1.07998 * 119.90758 * 180.02562 * 16 15 14 32 32 H 1.09000 * 109.46530 * 0.24362 * 19 18 17 33 33 H 1.09000 * 109.47693 * 56.34454 * 22 10 9 34 34 H 1.08993 * 109.48113 * 176.37289 * 22 10 9 35 35 H 1.08994 * 109.62623 * 8.95730 * 23 7 2 36 36 H 1.09002 * 109.62199 * 248.39235 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 6 3.5170 -1.2164 0.0000 9 6 3.9898 -2.1302 -1.1357 10 6 3.3403 -3.5067 -0.9841 11 1 3.5740 -3.9110 0.0008 12 7 3.8605 -4.4070 -2.0160 13 6 5.0557 -5.0856 -1.8080 14 7 5.7240 -4.9236 -0.6734 15 6 6.8603 -5.5712 -0.4791 16 6 7.3526 -6.4158 -1.4560 17 7 6.6897 -6.5804 -2.5885 18 6 5.5522 -5.9422 -2.7880 19 6 4.7943 -6.1351 -4.0762 20 9 3.5217 -6.6444 -3.7967 21 9 4.6708 -4.9061 -4.7330 22 6 1.8233 -3.3823 -1.1357 23 6 1.2677 -2.5151 -0.0017 24 1 -0.4850 0.8401 -0.0004 25 1 3.8982 -0.2077 -0.1591 26 1 3.8772 -1.5974 0.9556 27 1 5.0740 -2.2329 -1.0909 28 1 3.7047 -1.6973 -2.0946 29 1 3.3731 -4.5265 -2.8461 30 1 7.4046 -5.4401 0.4445 31 1 8.2807 -6.9436 -1.2939 32 1 5.3340 -6.8353 -4.7137 33 1 1.5907 -2.9191 -2.0946 34 1 1.3710 -4.3729 -1.0912 35 1 0.2038 -2.3408 -0.1618 36 1 1.4192 -3.0196 0.9526 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167844404.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:45 Heat of formation + Delta-G solvation = -64.839014 kcal Electronic energy + Delta-G solvation = -22639.551396 eV Core-core repulsion = 18986.726035 eV Total energy + Delta-G solvation = -3652.825361 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.19427 -47.13438 -41.03451 -37.73567 -34.95128 -34.05841 -32.19143 -30.42204 -29.64890 -27.25150 -26.98559 -23.85780 -23.03088 -21.67777 -21.47556 -19.64865 -18.36634 -17.76790 -17.40655 -17.35579 -16.62688 -16.05657 -15.17916 -14.95900 -14.64221 -14.46743 -13.98103 -13.89002 -13.50892 -13.33589 -12.89025 -12.77609 -12.49583 -12.14166 -11.83277 -11.64268 -11.52849 -11.41863 -11.07403 -10.85158 -10.70261 -10.31975 -10.23155 -9.98948 -9.64474 -9.19177 -8.95425 -8.73249 -8.50522 -7.76592 -6.13609 -4.04808 0.74206 1.28228 3.15353 3.27252 3.31420 3.34229 3.35692 3.64257 3.98482 4.19967 4.31903 4.36216 4.75515 4.88431 4.88942 5.14306 5.16984 5.25745 5.62965 5.80662 6.07107 6.13952 6.42685 6.52961 6.65905 6.74173 6.82219 6.95364 6.99732 7.08109 7.31045 7.37685 7.53685 7.60863 7.67610 7.78577 8.02263 8.33821 8.92193 9.51099 10.96007 Molecular weight = 283.12amu Principal moments of inertia in cm(-1) A = 0.023689 B = 0.004921 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.695341 B = 5688.246996 C = 6159.774259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.077 3.923 3 Si 0.891 3.109 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.492 4.492 8 C -0.006 4.006 9 C -0.111 4.111 10 C 0.159 3.841 11 H 0.084 0.916 12 N -0.691 5.691 13 C 0.403 3.597 14 N -0.494 5.494 15 C 0.135 3.865 16 C -0.041 4.041 17 N -0.375 5.375 18 C -0.089 4.089 19 C 0.332 3.668 20 F -0.194 7.194 21 F -0.193 7.193 22 C -0.117 4.117 23 C 0.015 3.985 24 H 0.265 0.735 25 H 0.025 0.975 26 H 0.021 0.979 27 H 0.036 0.964 28 H 0.051 0.949 29 H 0.407 0.593 30 H 0.172 0.828 31 H 0.169 0.831 32 H 0.131 0.869 33 H 0.055 0.945 34 H 0.037 0.963 35 H 0.062 0.938 36 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.864 -12.170 -5.091 17.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.125 4.125 3 Si 0.720 3.280 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.511 4.511 8 C -0.045 4.045 9 C -0.151 4.151 10 C 0.056 3.944 11 H 0.102 0.898 12 N -0.317 5.317 13 C 0.161 3.839 14 N -0.217 5.217 15 C -0.029 4.029 16 C -0.204 4.204 17 N -0.089 5.089 18 C -0.239 4.239 19 C 0.277 3.723 20 F -0.175 7.175 21 F -0.175 7.175 22 C -0.155 4.155 23 C -0.022 4.022 24 H 0.075 0.925 25 H 0.043 0.957 26 H 0.039 0.961 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.245 0.755 30 H 0.189 0.811 31 H 0.186 0.814 32 H 0.148 0.852 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 11.475 -11.855 -4.979 17.234 hybrid contribution 0.300 0.964 -0.352 1.069 sum 11.775 -10.891 -5.331 16.902 Atomic orbital electron populations 1.69817 1.06139 1.27132 1.49557 1.24831 0.94730 0.98560 0.94422 0.86651 0.79405 0.82988 0.79005 1.20043 1.21814 1.19970 1.20025 0.89313 0.91493 1.50239 1.19578 0.96608 0.94488 0.93786 1.21916 0.97123 0.95097 1.00915 1.21198 0.94570 0.88743 0.89907 0.89816 1.45601 1.19465 1.44918 1.21738 1.19153 0.87629 0.87709 0.89393 1.68264 1.08629 1.25077 1.19732 1.23711 0.90504 0.89352 0.99356 1.23181 1.02628 1.03510 0.91113 1.67641 1.03327 1.16690 1.21233 1.21601 0.98556 1.05342 0.98450 1.19849 0.80269 0.82095 0.90121 1.93031 1.42795 1.86949 1.94728 1.93038 1.96208 1.46423 1.81788 1.21965 0.92129 0.98840 1.02590 1.19313 0.98762 0.92667 0.91497 0.92467 0.95656 0.96051 0.94563 0.93050 0.75507 0.81079 0.81396 0.85205 0.92640 0.94467 0.91981 0.97499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.31 12.73 55.43 0.71 -24.61 16 2 C 0.08 2.10 5.46 -17.82 -0.10 2.01 16 3 Si 0.89 21.26 26.80 -169.99 -4.56 16.71 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.49 -12.80 5.51 -98.93 -0.55 -13.34 16 8 C -0.01 -0.15 5.60 -27.48 -0.15 -0.30 16 9 C -0.11 -2.32 5.51 -26.63 -0.15 -2.47 16 10 C 0.16 3.08 2.37 -67.97 -0.16 2.92 16 11 H 0.08 1.71 7.56 -51.93 -0.39 1.32 16 12 N -0.69 -11.75 4.98 -53.86 -0.27 -12.02 16 13 C 0.40 6.49 7.36 -154.72 -1.14 5.35 16 14 N -0.49 -7.75 9.38 -12.24 -0.11 -7.86 16 15 C 0.14 1.56 11.22 -17.39 -0.20 1.37 16 16 C -0.04 -0.44 11.21 -17.38 -0.19 -0.63 16 17 N -0.37 -4.85 10.40 -9.12 -0.09 -4.95 16 18 C -0.09 -1.26 6.30 -82.15 -0.52 -1.78 16 19 C 0.33 4.05 5.04 36.01 0.18 4.23 16 20 F -0.19 -2.57 16.28 2.25 0.04 -2.53 16 21 F -0.19 -2.62 16.27 2.25 0.04 -2.58 16 22 C -0.12 -2.42 5.40 -26.65 -0.14 -2.57 16 23 C 0.02 0.38 5.97 -27.51 -0.16 0.21 16 24 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.02 0.58 5.17 -51.93 -0.27 0.32 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.41 6.58 6.03 -40.82 -0.25 6.33 16 30 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.13 1.18 8.11 -51.93 -0.42 0.75 16 33 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 1.66 7.07 -51.93 -0.37 1.29 16 36 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 LS Contribution 302.32 15.07 4.56 4.56 Total: -1.00 -29.43 302.32 -7.19 -36.62 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -4.21 Total: 1.67 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -3.28 Total: -5.00 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.23 Total: -49.44 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.07 Total: -5.11 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.56 Total: 16.71 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.43 -7.19 -36.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844404.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.223 kcal (2) G-P(sol) polarization free energy of solvation -29.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds