Wall clock time and date at job start Tue Mar 31 2020 05:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 119.99849 * 2 1 4 4 C 1.39973 * 119.99975 * 179.97438 * 2 1 3 5 5 C 1.39412 * 120.41111 * 359.97438 * 4 2 1 6 6 C 1.38285 * 118.43954 * 180.02562 * 5 4 2 7 7 C 1.39079 * 119.17506 * 359.97438 * 6 5 4 8 8 N 1.39417 * 119.62532 * 179.97438 * 7 6 5 9 9 C 1.38342 * 119.99554 * 6.10811 * 8 7 6 10 10 C 1.38986 * 119.99958 * 61.83348 * 9 8 7 11 11 H 1.08000 * 119.99864 * 198.07921 * 10 9 8 12 12 C 1.40838 * 120.00462 * 18.07473 * 10 9 8 13 13 N 1.30334 * 119.99763 * 9.13429 * 12 10 9 14 14 Si 1.86800 * 120.00317 * 189.13403 * 12 10 9 15 15 H 1.48497 * 109.46958 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47119 * 119.99796 * 14 12 10 17 17 H 1.48497 * 109.47065 * 240.00078 * 14 12 10 18 18 C 1.41158 * 119.99546 * 241.82817 * 9 8 7 19 19 C 1.43193 * 119.99465 * 174.69666 * 18 9 8 20 20 N 9.15317 * 96.22764 * 175.14927 * 2 1 3 21 21 C 1.43195 * 120.00228 * 354.42598 * 18 9 8 22 22 N 8.05265 * 118.53583 * 155.44416 * 2 1 3 23 23 N 1.32333 * 120.75877 * 0.26327 * 7 6 5 24 24 C 1.31950 * 121.69535 * 359.46649 * 23 7 6 25 25 H 1.08999 * 109.47722 * 269.99991 * 1 2 3 26 26 H 1.09004 * 109.47597 * 30.00253 * 1 2 3 27 27 H 1.09006 * 109.47297 * 150.00050 * 1 2 3 28 28 H 1.09002 * 109.47015 * 269.99934 * 3 2 1 29 29 H 1.08996 * 109.47241 * 29.99853 * 3 2 1 30 30 H 1.09005 * 109.47228 * 149.99896 * 3 2 1 31 31 H 1.07993 * 120.78196 * 0.02562 * 5 4 2 32 32 H 1.07999 * 120.41614 * 180.02562 * 6 5 4 33 33 H 0.96997 * 120.00449 * 186.10626 * 8 7 6 34 34 H 0.96995 * 120.00064 * 184.98707 * 13 12 10 35 35 H 1.07998 * 119.62390 * 180.29032 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1648 -1.2122 0.0005 5 6 1.4764 -2.4245 0.0016 6 6 2.2086 -3.5976 0.0027 7 6 3.5978 -3.5297 0.0021 8 7 4.3452 -4.7066 0.0037 9 6 3.7104 -5.9293 -0.1217 10 6 2.9841 -6.2208 -1.2703 11 1 2.2606 -7.0225 -1.2628 12 6 3.1916 -5.4705 -2.4441 13 7 4.1821 -4.6261 -2.5111 14 14 2.0473 -5.6858 -3.9047 15 1 1.0103 -6.6967 -3.5764 16 1 1.3931 -4.3895 -4.2163 17 1 2.8284 -6.1417 -5.0825 18 6 3.8003 -6.8809 0.9170 19 6 3.0520 -8.0993 0.8385 20 7 2.4579 -9.0666 0.7694 21 6 4.6442 -6.6305 2.0464 22 7 5.3118 -6.4346 2.9400 23 7 4.2183 -2.3609 0.0057 24 6 3.5517 -1.2222 -0.0004 25 1 -0.3634 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 2.3791 1.5834 -1.0277 29 1 1.6083 2.0284 0.5138 30 1 3.1499 1.1385 0.5139 31 1 0.3967 -2.4470 0.0016 32 1 1.7081 -4.5546 0.0031 33 1 5.3103 -4.6681 0.0926 34 1 4.2827 -4.0574 -3.2903 35 1 4.0923 -0.2872 -0.0019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169083524.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:37 Heat of formation + Delta-G solvation = 115.539873 kcal Electronic energy + Delta-G solvation = -21228.635420 eV Core-core repulsion = 18034.321060 eV Total energy + Delta-G solvation = -3194.314359 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.87359 -37.66370 -36.12995 -35.09656 -34.68334 -33.33083 -31.67245 -30.68770 -28.50489 -27.98881 -27.10452 -24.40152 -22.69177 -21.77418 -20.60794 -18.91858 -17.38488 -17.20209 -16.70630 -16.09795 -15.73886 -15.02304 -14.91964 -14.13383 -13.93928 -13.62403 -13.20070 -12.91204 -12.73238 -12.63279 -12.55387 -12.32912 -12.22877 -11.95728 -11.73769 -11.66074 -11.52507 -11.50146 -11.43961 -11.00003 -10.87083 -10.73448 -10.24397 -10.09434 -9.23987 -8.85887 -8.57411 -7.99675 -7.45952 -6.24069 -5.41882 1.86796 1.98525 2.39757 2.71229 2.79828 2.87295 3.33360 3.40741 3.87367 3.99533 4.11724 4.27794 4.42984 4.65200 5.03746 5.10461 5.20720 5.22214 5.31104 5.39279 5.60724 5.63262 5.69809 5.70832 5.72650 5.81508 6.22785 6.35744 6.36851 6.47751 6.58760 6.90058 7.09993 7.34257 7.44272 7.66768 7.76161 7.79963 8.28809 8.49317 8.96609 9.08083 9.17299 9.24530 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.014087 B = 0.006388 C = 0.005187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.151560 B = 4382.317843 C = 5396.359578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.644 5.644 3 C 0.102 3.898 4 C 0.088 3.912 5 C -0.114 4.114 6 C -0.176 4.176 7 C 0.403 3.597 8 N -0.647 5.647 9 C 0.389 3.611 10 C -0.379 4.379 11 H 0.110 0.890 12 C 0.071 3.929 13 N -0.706 5.706 14 Si 0.918 3.082 15 H -0.247 1.247 16 H -0.262 1.262 17 H -0.263 1.263 18 C -0.315 4.315 19 C 0.325 3.675 20 N -0.536 5.536 21 C 0.312 3.688 22 N -0.534 5.534 23 N -0.507 5.507 24 C 0.071 3.929 25 H 0.040 0.960 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.040 0.960 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.125 0.875 32 H 0.141 0.859 33 H 0.404 0.596 34 H 0.301 0.699 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.254 13.386 -5.122 15.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.361 5.361 3 C -0.042 4.042 4 C -0.013 4.013 5 C -0.143 4.143 6 C -0.201 4.201 7 C 0.167 3.833 8 N -0.274 5.274 9 C 0.284 3.716 10 C -0.407 4.407 11 H 0.128 0.872 12 C -0.162 4.162 13 N -0.324 5.324 14 Si 0.739 3.261 15 H -0.170 1.170 16 H -0.187 1.187 17 H -0.188 1.188 18 C -0.333 4.333 19 C 0.018 3.982 20 N -0.218 5.218 21 C 0.005 3.995 22 N -0.216 5.216 23 N -0.223 5.223 24 C -0.091 4.091 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.143 0.857 32 H 0.159 0.841 33 H 0.241 0.759 34 H 0.113 0.887 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.196 12.391 -4.008 14.021 hybrid contribution -0.954 0.477 -1.115 1.543 sum -6.151 12.868 -5.123 15.155 Atomic orbital electron populations 1.21474 0.80335 1.01969 1.00463 1.45916 1.04135 1.02557 1.83522 1.21479 0.97042 0.85199 1.00478 1.18523 0.92508 0.86055 1.04239 1.20828 0.99439 0.90536 1.03536 1.21494 0.93278 0.99367 1.05956 1.17763 0.87606 0.85317 0.92599 1.41026 1.08559 1.00807 1.76962 1.16661 0.85087 0.81157 0.88712 1.20358 1.16712 1.11643 0.91946 0.87181 1.26460 0.95048 0.93223 1.01429 1.69549 1.21442 1.11388 1.29980 0.85996 0.80521 0.80502 0.79031 1.16994 1.18666 1.18777 1.12979 1.22503 0.97801 1.00067 1.24751 0.90928 0.90980 0.91553 1.81114 1.16487 1.13105 1.11143 1.25003 0.91189 0.91960 0.91350 1.80908 1.16815 1.10722 1.13185 1.66920 1.40127 0.96993 1.18243 1.21775 0.88978 0.95371 1.02936 0.94123 0.92312 0.91726 0.94118 0.92245 0.91641 0.85749 0.84105 0.75902 0.88734 0.84028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.99 10.22 59.84 0.61 1.60 16 2 N -0.64 -7.93 3.42 -187.36 -0.64 -8.57 16 3 C 0.10 0.97 10.20 59.85 0.61 1.58 16 4 C 0.09 1.36 6.57 -83.53 -0.55 0.81 16 5 C -0.11 -1.82 9.30 -39.13 -0.36 -2.18 16 6 C -0.18 -3.23 8.58 -39.25 -0.34 -3.56 16 7 C 0.40 7.93 6.01 -154.69 -0.93 7.00 16 8 N -0.65 -13.18 3.31 -9.69 -0.03 -13.21 16 9 C 0.39 8.11 4.93 -83.54 -0.41 7.70 16 10 C -0.38 -7.65 7.05 -38.32 -0.27 -7.92 16 11 H 0.11 2.25 6.95 -52.49 -0.37 1.88 16 12 C 0.07 1.33 4.77 -17.20 -0.08 1.25 16 13 N -0.71 -13.75 10.79 55.60 0.60 -13.15 16 14 Si 0.92 14.79 29.58 -169.99 -5.03 9.76 16 15 H -0.25 -4.04 7.11 56.52 0.40 -3.64 16 16 H -0.26 -4.21 7.11 56.52 0.40 -3.81 16 17 H -0.26 -4.25 7.11 56.52 0.40 -3.85 16 18 C -0.31 -6.93 5.88 -104.94 -0.62 -7.55 16 19 C 0.33 7.43 13.88 -22.43 -0.31 7.12 16 20 N -0.54 -12.69 18.55 41.89 0.78 -11.91 16 21 C 0.31 7.21 14.81 -22.59 -0.33 6.88 16 22 N -0.53 -12.88 18.51 41.70 0.77 -12.11 16 23 N -0.51 -9.74 10.39 -12.20 -0.13 -9.87 16 24 C 0.07 1.16 10.38 -17.33 -0.18 0.98 16 25 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.46 8.07 -51.93 -0.42 0.04 16 27 H 0.06 0.63 6.25 -51.93 -0.32 0.31 16 28 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.45 8.07 -51.93 -0.42 0.03 16 30 H 0.06 0.61 6.23 -51.93 -0.32 0.29 16 31 H 0.12 1.68 6.27 -52.49 -0.33 1.35 16 32 H 0.14 2.62 6.22 -52.49 -0.33 2.29 16 33 H 0.40 8.34 8.94 -40.82 -0.36 7.98 16 34 H 0.30 5.44 8.29 -40.82 -0.34 5.10 16 35 H 0.14 1.97 6.15 -52.49 -0.32 1.65 16 LS Contribution 316.16 15.07 4.76 4.76 Total: -1.00 -25.81 316.16 -5.25 -31.06 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -3.17 Total: 9.51 kcal Atomic # 6 Polarization: 16.87 SS G_CDS: -3.17 Total: 13.71 kcal Atomic # 7 Polarization: -70.16 SS G_CDS: 1.35 Total: -68.81 kcal Atomic # 14 Polarization: 14.79 SS G_CDS: -5.03 Total: 9.76 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -25.81 -5.25 -31.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083524.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.604 kcal (2) G-P(sol) polarization free energy of solvation -25.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds