Wall clock time and date at job start Tue Mar 31 2020 05:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 119.99849 * 2 1 4 4 C 1.39973 * 119.99975 * 179.97438 * 2 1 3 5 5 C 1.39412 * 120.41111 * 359.97438 * 4 2 1 6 6 C 1.38285 * 118.43954 * 180.02562 * 5 4 2 7 7 C 1.39079 * 119.17506 * 359.97438 * 6 5 4 8 8 N 1.39417 * 119.62532 * 179.97438 * 7 6 5 9 9 C 1.38342 * 119.99554 * 6.10811 * 8 7 6 10 10 C 1.38986 * 119.99958 * 61.83348 * 9 8 7 11 11 H 1.08000 * 119.99864 * 198.07921 * 10 9 8 12 12 C 1.40838 * 120.00462 * 18.07473 * 10 9 8 13 13 N 1.30334 * 119.99763 * 9.13429 * 12 10 9 14 14 Si 1.86800 * 120.00317 * 189.13403 * 12 10 9 15 15 H 1.48497 * 109.46958 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47119 * 119.99796 * 14 12 10 17 17 H 1.48497 * 109.47065 * 240.00078 * 14 12 10 18 18 C 1.41158 * 119.99546 * 241.82817 * 9 8 7 19 19 C 1.43193 * 119.99465 * 174.69666 * 18 9 8 20 20 N 9.15317 * 96.22764 * 175.14927 * 2 1 3 21 21 C 1.43195 * 120.00228 * 354.42598 * 18 9 8 22 22 N 8.05265 * 118.53583 * 155.44416 * 2 1 3 23 23 N 1.32333 * 120.75877 * 0.26327 * 7 6 5 24 24 C 1.31950 * 121.69535 * 359.46649 * 23 7 6 25 25 H 1.08999 * 109.47722 * 269.99991 * 1 2 3 26 26 H 1.09004 * 109.47597 * 30.00253 * 1 2 3 27 27 H 1.09006 * 109.47297 * 150.00050 * 1 2 3 28 28 H 1.09002 * 109.47015 * 269.99934 * 3 2 1 29 29 H 1.08996 * 109.47241 * 29.99853 * 3 2 1 30 30 H 1.09005 * 109.47228 * 149.99896 * 3 2 1 31 31 H 1.07993 * 120.78196 * 0.02562 * 5 4 2 32 32 H 1.07999 * 120.41614 * 180.02562 * 6 5 4 33 33 H 0.96997 * 120.00449 * 186.10626 * 8 7 6 34 34 H 0.96995 * 120.00064 * 184.98707 * 13 12 10 35 35 H 1.07998 * 119.62390 * 180.29032 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1648 -1.2122 0.0005 5 6 1.4764 -2.4245 0.0016 6 6 2.2086 -3.5976 0.0027 7 6 3.5978 -3.5297 0.0021 8 7 4.3452 -4.7066 0.0037 9 6 3.7104 -5.9293 -0.1217 10 6 2.9841 -6.2208 -1.2703 11 1 2.2606 -7.0225 -1.2628 12 6 3.1916 -5.4705 -2.4441 13 7 4.1821 -4.6261 -2.5111 14 14 2.0473 -5.6858 -3.9047 15 1 1.0103 -6.6967 -3.5764 16 1 1.3931 -4.3895 -4.2163 17 1 2.8284 -6.1417 -5.0825 18 6 3.8003 -6.8809 0.9170 19 6 3.0520 -8.0993 0.8385 20 7 2.4579 -9.0666 0.7694 21 6 4.6442 -6.6305 2.0464 22 7 5.3118 -6.4346 2.9400 23 7 4.2183 -2.3609 0.0057 24 6 3.5517 -1.2222 -0.0004 25 1 -0.3634 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 2.3791 1.5834 -1.0277 29 1 1.6083 2.0284 0.5138 30 1 3.1499 1.1385 0.5139 31 1 0.3967 -2.4470 0.0016 32 1 1.7081 -4.5546 0.0031 33 1 5.3103 -4.6681 0.0926 34 1 4.2827 -4.0574 -3.2903 35 1 4.0923 -0.2872 -0.0019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169083524.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:36 Heat of formation + Delta-G solvation = 102.202513 kcal Electronic energy + Delta-G solvation = -21229.213771 eV Core-core repulsion = 18034.321060 eV Total energy + Delta-G solvation = -3194.892711 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.113 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.19407 -39.08435 -37.47378 -36.71043 -36.49331 -34.83703 -32.94600 -32.21081 -29.65538 -28.99672 -28.72398 -25.52542 -23.96792 -23.22161 -21.93453 -20.54080 -18.93264 -18.60691 -18.00952 -17.52859 -17.03413 -16.30644 -15.86879 -15.39621 -15.27550 -14.85413 -14.59307 -14.47918 -14.29426 -14.01914 -13.86296 -13.54924 -13.37371 -13.36754 -13.25918 -13.18201 -13.07654 -12.76531 -12.67089 -12.63996 -12.39174 -12.06125 -11.60210 -11.49475 -10.62833 -10.22089 -9.95160 -9.45737 -8.88862 -7.52197 -7.09996 0.46138 0.60262 1.03846 1.37701 1.54021 1.54686 2.06352 2.10919 2.26456 2.30864 2.44894 2.63924 2.82261 3.27958 3.46968 3.87644 3.93688 4.09721 4.31414 4.31904 4.44538 4.61974 4.64189 4.68873 4.71142 4.89852 4.96129 4.98861 5.09569 5.21204 5.26794 5.45651 5.57720 5.82501 6.11395 6.22749 6.48828 6.58887 6.77368 6.98909 7.21776 7.36886 7.62922 7.75944 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.014087 B = 0.006388 C = 0.005187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.151560 B = 4382.317843 C = 5396.359578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.645 5.645 3 C 0.094 3.906 4 C 0.101 3.899 5 C -0.118 4.118 6 C -0.188 4.188 7 C 0.378 3.622 8 N -0.652 5.652 9 C 0.385 3.615 10 C -0.371 4.371 11 H 0.107 0.893 12 C 0.046 3.954 13 N -0.713 5.713 14 Si 0.975 3.025 15 H -0.251 1.251 16 H -0.256 1.256 17 H -0.260 1.260 18 C -0.329 4.329 19 C 0.331 3.669 20 N -0.557 5.557 21 C 0.319 3.681 22 N -0.561 5.561 23 N -0.527 5.527 24 C 0.057 3.943 25 H 0.048 0.952 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.149 0.851 32 H 0.132 0.868 33 H 0.397 0.603 34 H 0.308 0.692 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.788 15.595 -6.554 18.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.361 5.361 3 C -0.048 4.048 4 C -0.003 4.003 5 C -0.148 4.148 6 C -0.213 4.213 7 C 0.143 3.857 8 N -0.279 5.279 9 C 0.279 3.721 10 C -0.398 4.398 11 H 0.125 0.875 12 C -0.185 4.185 13 N -0.331 5.331 14 Si 0.793 3.207 15 H -0.174 1.174 16 H -0.180 1.180 17 H -0.184 1.184 18 C -0.349 4.349 19 C 0.025 3.975 20 N -0.241 5.241 21 C 0.013 3.987 22 N -0.245 5.245 23 N -0.242 5.242 24 C -0.105 4.105 25 H 0.066 0.934 26 H 0.102 0.898 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.167 0.833 32 H 0.150 0.850 33 H 0.233 0.767 34 H 0.121 0.879 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.747 14.658 -5.426 17.024 hybrid contribution -0.532 0.033 -0.755 0.924 sum -7.278 14.691 -6.181 17.521 Atomic orbital electron populations 1.21680 0.78688 1.03190 1.01315 1.46249 1.05365 1.02263 1.82214 1.21689 0.97300 0.84424 1.01404 1.18623 0.92377 0.87270 1.02013 1.21082 1.00634 0.90021 1.03025 1.21496 0.92936 0.99954 1.06904 1.17868 0.88058 0.85211 0.94553 1.40954 1.08145 1.00953 1.77817 1.16654 0.85494 0.81319 0.88584 1.20516 1.15836 1.11202 0.92240 0.87544 1.27029 0.96049 0.92702 1.02719 1.69566 1.21838 1.11018 1.30648 0.85173 0.78762 0.80444 0.76276 1.17355 1.17988 1.18427 1.13044 1.23178 0.98174 1.00489 1.24849 0.90649 0.90905 0.91100 1.81098 1.17468 1.13652 1.11855 1.25167 0.90925 0.91364 0.91212 1.80886 1.17966 1.11605 1.14012 1.66878 1.41168 0.97579 1.18611 1.22194 0.89911 0.95354 1.03001 0.93381 0.89844 0.91831 0.93229 0.89832 0.91734 0.83320 0.85004 0.76697 0.87943 0.81832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.49 10.22 127.77 1.31 2.80 16 2 N -0.64 -13.77 3.42 -746.68 -2.55 -16.32 16 3 C 0.09 1.46 10.20 127.77 1.30 2.77 16 4 C 0.10 2.88 6.57 38.23 0.25 3.13 16 5 C -0.12 -3.56 9.30 22.56 0.21 -3.35 16 6 C -0.19 -6.83 8.58 22.48 0.19 -6.64 16 7 C 0.38 14.92 6.01 132.93 0.80 15.72 16 8 N -0.65 -27.07 3.31 -184.58 -0.61 -27.68 16 9 C 0.38 16.31 4.93 39.01 0.19 16.51 16 10 C -0.37 -14.92 7.05 23.09 0.16 -14.76 16 11 H 0.11 4.34 6.95 -2.91 -0.02 4.32 16 12 C 0.05 1.71 4.77 85.55 0.41 2.12 16 13 N -0.71 -27.23 10.79 21.98 0.24 -26.99 16 14 Si 0.97 28.84 29.58 68.60 2.03 30.87 16 15 H -0.25 -7.54 7.11 99.48 0.71 -6.84 16 16 H -0.26 -7.31 7.11 99.48 0.71 -6.60 16 17 H -0.26 -7.57 7.11 99.48 0.71 -6.86 16 18 C -0.33 -14.83 5.88 -20.07 -0.12 -14.95 16 19 C 0.33 15.35 13.88 88.32 1.23 16.58 16 20 N -0.56 -26.61 18.55 19.02 0.35 -26.25 16 21 C 0.32 15.12 14.81 88.37 1.31 16.43 16 22 N -0.56 -27.70 18.51 18.96 0.35 -27.35 16 23 N -0.53 -20.09 10.39 -192.51 -2.00 -22.09 16 24 C 0.06 1.78 10.38 84.78 0.88 2.66 16 25 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.08 0.94 8.07 -2.39 -0.02 0.92 16 27 H 0.06 1.03 6.25 -2.38 -0.01 1.02 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.08 0.92 8.07 -2.39 -0.02 0.90 16 30 H 0.06 1.02 6.23 -2.38 -0.01 1.01 16 31 H 0.15 3.65 6.27 -2.91 -0.02 3.63 16 32 H 0.13 4.93 6.22 -2.91 -0.02 4.91 16 33 H 0.40 16.95 8.94 -92.71 -0.83 16.12 16 34 H 0.31 10.77 8.29 -92.71 -0.77 10.00 16 35 H 0.16 4.24 6.15 -2.91 -0.02 4.22 16 Total: -1.00 -54.93 316.16 6.27 -48.66 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 0.34 Total: 28.14 kcal Atomic # 6 Polarization: 30.89 SS G_CDS: 8.12 Total: 39.01 kcal Atomic # 7 Polarization: -142.46 SS G_CDS: -4.22 Total: -146.68 kcal Atomic # 14 Polarization: 28.84 SS G_CDS: 2.03 Total: 30.87 kcal Total: -54.93 6.27 -48.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083524.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.864 kcal (2) G-P(sol) polarization free energy of solvation -54.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds