Wall clock time and date at job start Tue Mar 31 2020 05:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42890 * 113.99930 * 2 1 4 4 C 1.50706 * 109.47366 * 179.97438 * 3 2 1 5 5 N 1.29928 * 125.38173 * 90.27237 * 4 3 2 6 6 C 1.36062 * 108.47927 * 180.19488 * 5 4 3 7 7 C 1.47425 * 126.44903 * 179.86170 * 6 5 4 8 8 O 1.21613 * 120.00006 * 179.68772 * 7 6 5 9 9 N 1.34777 * 119.99743 * 359.68465 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72398 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.46748 * 180.02562 * 12 11 10 14 14 C 1.36939 * 119.99838 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99927 * 0.02562 * 14 13 12 16 16 C 1.38815 * 119.99976 * 179.97438 * 14 13 12 17 17 N 1.31612 * 120.00037 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99973 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46997 * 60.00396 * 18 16 14 20 20 H 1.48501 * 109.46950 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47074 * 300.00402 * 18 16 14 22 22 C 1.36093 * 107.10320 * 359.59796 * 6 5 4 23 23 O 1.34057 * 125.37559 * 270.02908 * 4 3 2 24 24 H 1.08998 * 109.47422 * 299.99964 * 1 2 3 25 25 H 1.09000 * 109.47217 * 60.00466 * 1 2 3 26 26 H 1.09005 * 109.47243 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47581 * 59.99691 * 3 2 1 28 28 H 1.08999 * 109.47652 * 299.99596 * 3 2 1 29 29 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 30 30 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 31 31 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 32 32 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 33 33 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 34 34 H 1.08995 * 109.47672 * 299.99669 * 12 11 10 35 35 H 1.09007 * 109.47288 * 60.00489 * 12 11 10 36 36 H 0.96992 * 119.99973 * 359.97438 * 13 12 11 37 37 H 0.97003 * 120.00466 * 180.02562 * 17 16 14 38 38 H 1.07997 * 126.52576 * 180.27762 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2633 1.1319 -1.0584 6 6 5.5605 1.0230 -0.6622 7 6 6.7399 0.9293 -1.5417 8 8 7.8527 0.8410 -1.0592 9 7 6.5848 0.9414 -2.8805 10 6 7.7573 0.8544 -3.7545 11 6 7.3079 0.8955 -5.2164 12 6 8.5326 0.8052 -6.1291 13 7 8.1022 0.8452 -7.5290 14 6 9.0310 0.7778 -8.5330 15 1 10.0807 0.6946 -8.2928 16 6 8.6233 0.8151 -9.8594 17 7 7.3441 0.9159 -10.1520 18 14 9.8903 0.7238 -11.2290 19 1 10.6446 -0.5509 -11.1213 20 1 9.2029 0.7832 -12.5440 21 1 10.8307 1.8669 -11.1103 22 6 5.5647 1.0229 0.6987 23 8 4.2857 1.1249 1.0940 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6885 1.8464 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 5.6973 1.0121 -3.2654 30 1 8.4224 1.6947 -3.5551 31 1 8.2849 -0.0799 -3.5627 32 1 6.6430 0.0552 -5.4158 33 1 6.7804 1.8299 -5.4083 34 1 9.1972 1.6458 -5.9296 35 1 9.0605 -0.1290 -5.9375 36 1 7.1594 0.9188 -7.7446 37 1 7.0590 0.9416 -11.0788 38 1 6.4318 0.9543 1.3388 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169633392.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:03 Heat of formation + Delta-G solvation = -47.777415 kcal Electronic energy + Delta-G solvation = -20795.593192 eV Core-core repulsion = 17254.595193 eV Total energy + Delta-G solvation = -3540.997999 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.82008 -39.56615 -38.44935 -36.04392 -35.26308 -34.30747 -32.08017 -31.73812 -29.57766 -28.25989 -26.26337 -25.75661 -23.97903 -22.49491 -21.79886 -21.19237 -20.48436 -18.49505 -17.65030 -17.09054 -16.77107 -16.46790 -16.25027 -16.15403 -15.80767 -15.58392 -14.61113 -14.31481 -14.30498 -13.74696 -13.40240 -13.24212 -12.97853 -12.94607 -12.48806 -12.11344 -11.64015 -11.63519 -11.22489 -10.94423 -10.88977 -10.80120 -10.58583 -10.40430 -10.30263 -10.04329 -9.68468 -9.51815 -9.04417 -8.85215 -6.91166 -5.74670 -3.03643 0.72740 1.51261 2.08253 2.91157 3.10505 3.26845 3.46461 3.50275 3.51705 3.72493 4.31846 4.45468 4.57902 4.61285 4.70990 4.79969 4.87193 5.11798 5.14185 5.18852 5.26873 5.33412 5.59617 5.59926 5.65795 5.98561 6.08553 6.21887 6.34950 6.39596 6.41590 6.81803 6.86102 7.02966 7.47283 7.71788 8.05745 8.44291 9.55208 10.12665 10.47431 11.48321 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.023141 B = 0.002440 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.668292 B =11473.122621 C =12569.382028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.161 3.839 4 C 0.193 3.807 5 N -0.436 5.436 6 C -0.070 4.070 7 C 0.599 3.401 8 O -0.539 6.539 9 N -0.707 5.707 10 C 0.122 3.878 11 C -0.138 4.138 12 C 0.157 3.843 13 N -0.734 5.734 14 C -0.240 4.240 15 H 0.071 0.929 16 C -0.015 4.015 17 N -0.935 5.935 18 Si 0.909 3.091 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C 0.023 3.977 23 O -0.190 6.190 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.410 0.590 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.921 1.416 25.713 29.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C 0.083 3.917 4 C -0.016 4.016 5 N -0.168 5.168 6 C -0.191 4.191 7 C 0.384 3.616 8 O -0.416 6.416 9 N -0.357 5.357 10 C -0.002 4.002 11 C -0.177 4.177 12 C 0.029 3.971 13 N -0.378 5.378 14 C -0.371 4.371 15 H 0.089 0.911 16 C -0.211 4.211 17 N -0.583 5.583 18 Si 0.740 3.260 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.051 4.051 23 O -0.075 6.075 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.112 0.888 27 H 0.102 0.898 28 H 0.118 0.882 29 H 0.246 0.754 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -13.110 1.193 25.330 28.546 hybrid contribution 0.032 0.166 -0.405 0.439 sum -13.078 1.360 24.925 28.180 Atomic orbital electron populations 1.22850 0.79158 1.03739 1.00625 1.87964 1.20937 1.25793 1.95613 1.20539 0.80680 0.86634 1.03820 1.25632 0.95404 1.02120 0.78491 1.70747 1.00935 1.15242 1.29854 1.21897 0.92167 1.11864 0.93191 1.16692 0.85935 0.76899 0.82058 1.90834 1.24351 1.51016 1.75430 1.45891 1.11785 1.72772 1.05244 1.21452 0.87028 1.02639 0.89049 1.21952 1.00424 1.02937 0.92337 1.20519 0.93297 0.98195 0.85125 1.42336 1.07144 1.89119 0.99216 1.19206 0.89435 1.42414 0.86088 0.91132 1.24758 0.96119 1.02980 0.97240 1.69649 1.13313 1.57491 1.17897 0.86236 0.80359 0.77893 0.81516 1.21228 1.21681 1.21239 1.25391 0.84828 0.99154 0.95763 1.84390 1.17079 1.68396 1.37667 0.93456 0.93150 0.88817 0.89831 0.88239 0.75436 0.90999 0.90989 0.91144 0.91171 0.96012 0.96007 0.78266 0.93455 0.74913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.38 -3.15 10.69 -35.23 -0.38 -3.52 16 3 C 0.16 1.04 6.56 36.01 0.24 1.27 16 4 C 0.19 1.90 7.93 -13.08 -0.10 1.80 16 5 N -0.44 -5.21 11.06 -7.65 -0.08 -5.30 16 6 C -0.07 -0.86 6.99 -83.02 -0.58 -1.44 16 7 C 0.60 8.50 7.81 -12.52 -0.10 8.40 16 8 O -0.54 -8.87 16.89 5.27 0.09 -8.78 16 9 N -0.71 -9.53 5.55 -61.38 -0.34 -9.87 16 10 C 0.12 1.74 5.67 -4.04 -0.02 1.72 16 11 C -0.14 -2.22 5.44 -26.73 -0.15 -2.36 16 12 C 0.16 3.20 6.26 -4.04 -0.03 3.17 16 13 N -0.73 -19.05 5.60 -59.90 -0.34 -19.38 16 14 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 15 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 16 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 17 N -0.93 -28.69 13.06 55.49 0.72 -27.96 16 18 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 C 0.02 0.22 11.95 29.96 0.36 0.58 16 23 O -0.19 -1.81 10.73 6.50 0.07 -1.74 16 24 H 0.05 0.13 8.14 -51.93 -0.42 -0.30 16 25 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.41 5.09 8.20 -40.82 -0.33 4.76 16 30 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.38 10.37 7.67 -40.82 -0.31 10.05 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.23 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 339.20 15.07 5.11 5.11 Total: -1.00 -35.43 339.20 -4.95 -40.38 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -5.27 Total: 6.55 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 0.48 Total: 6.81 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: -0.04 Total: -62.51 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.22 Total: -14.05 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.43 -4.95 -40.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169633392.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.395 kcal (2) G-P(sol) polarization free energy of solvation -35.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds