Wall clock time and date at job start Tue Mar 31 2020 05:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00581 * 2 1 4 4 C 1.50700 * 109.47515 * 179.97438 * 3 2 1 5 5 N 1.31130 * 126.54706 * 90.25009 * 4 3 2 6 6 C 1.34498 * 105.61324 * 180.12430 * 5 4 3 7 7 C 1.50703 * 126.28992 * 179.90491 * 6 5 4 8 8 O 1.42899 * 109.47184 * 269.71314 * 7 6 5 9 9 C 1.42893 * 114.00135 * 180.02562 * 8 7 6 10 10 H 1.09009 * 110.63944 * 328.31148 * 9 8 7 11 11 C 1.55154 * 110.72052 * 204.97568 * 9 8 7 12 12 C 1.55125 * 101.48572 * 205.96682 * 11 9 8 13 13 N 1.47423 * 104.72395 * 37.29433 * 12 11 9 14 14 C 1.36938 * 125.64840 * 155.81746 * 13 12 11 15 15 H 1.08002 * 119.99798 * 193.30965 * 14 13 12 16 16 C 1.38805 * 120.00326 * 13.30689 * 14 13 12 17 17 N 1.31619 * 119.99643 * 27.28488 * 16 14 13 18 18 Si 1.86803 * 120.00275 * 207.28323 * 16 14 13 19 19 H 1.48496 * 109.47008 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46883 * 240.00007 * 18 16 14 21 21 H 1.48496 * 109.47035 * 120.00305 * 18 16 14 22 22 C 1.47022 * 108.69958 * 335.55457 * 13 12 11 23 23 N 1.29944 * 107.42165 * 359.63908 * 6 5 4 24 24 O 1.21298 * 110.25703 * 0.22962 * 23 6 5 25 25 H 1.08999 * 109.47461 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47099 * 300.00274 * 1 2 3 27 27 H 1.09007 * 109.46855 * 59.99832 * 1 2 3 28 28 H 1.09001 * 109.47224 * 59.99744 * 3 2 1 29 29 H 1.08996 * 109.46832 * 300.00139 * 3 2 1 30 30 H 1.09000 * 109.47157 * 149.71081 * 7 6 5 31 31 H 1.09002 * 109.46723 * 29.71219 * 7 6 5 32 32 H 1.09001 * 111.00439 * 324.20428 * 11 9 8 33 33 H 1.08997 * 111.00546 * 88.02048 * 11 9 8 34 34 H 1.09002 * 110.50230 * 278.45118 * 12 11 9 35 35 H 1.09005 * 110.34880 * 156.05846 * 12 11 9 36 36 H 0.96994 * 120.00297 * 5.84617 * 17 16 14 37 37 H 1.08999 * 109.88184 * 120.70859 * 22 13 12 38 38 H 1.09000 * 109.87675 * 241.70882 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2918 1.1291 -1.0525 6 6 5.5435 1.0250 -0.5714 7 6 6.8070 0.9252 -1.3867 8 8 7.1004 -0.4495 -1.6441 9 6 8.2862 -0.6564 -2.4142 10 1 8.4418 0.1689 -3.1093 11 6 8.2211 -2.0103 -3.1692 12 6 9.7269 -2.3437 -3.3359 13 7 10.3533 -1.8841 -2.0830 14 6 11.5276 -2.3544 -1.5585 15 1 11.7978 -2.1165 -0.5403 16 6 12.3706 -3.1369 -2.3355 17 7 12.3686 -3.0059 -3.6452 18 14 13.5079 -4.3759 -1.5224 19 1 13.3201 -4.3285 -0.0502 20 1 14.9175 -4.0445 -1.8520 21 1 13.1908 -5.7390 -2.0189 22 6 9.5117 -0.8328 -1.4932 23 7 5.4637 1.0322 0.7255 24 8 4.3056 1.1241 1.0745 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.6887 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 7.6320 1.3757 -0.8350 31 1 6.6719 1.4510 -2.3319 32 1 7.7138 -2.7672 -2.5710 33 1 7.7382 -1.8938 -4.1394 34 1 10.1447 -1.8073 -4.1879 35 1 9.8660 -3.4179 -3.4577 36 1 11.8421 -2.3059 -4.0618 37 1 9.1866 -1.1334 -0.4971 38 1 10.0715 0.1006 -1.4342 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222464004.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:10 Heat of formation + Delta-G solvation = 17.521185 kcal Electronic energy + Delta-G solvation = -21712.547849 eV Core-core repulsion = 18174.381409 eV Total energy + Delta-G solvation = -3538.166440 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.87727 -38.70911 -38.54371 -36.64404 -35.69322 -33.36435 -32.30818 -29.34076 -28.92683 -28.16902 -26.86217 -26.39345 -24.22465 -23.76639 -21.82345 -20.49230 -20.18430 -18.54115 -17.98403 -17.56939 -16.93489 -16.64467 -16.57249 -16.19133 -15.35446 -14.99359 -14.12901 -14.06308 -13.66919 -13.59508 -13.18926 -13.07956 -12.55235 -12.33112 -12.25936 -12.14001 -11.85643 -11.66122 -11.35511 -11.17218 -10.76991 -10.61905 -10.46504 -10.39804 -10.35258 -10.03770 -10.00281 -9.56761 -9.32996 -8.40411 -6.94439 -6.08054 -3.10574 0.76127 1.78091 2.34206 3.13391 3.45867 3.54217 3.57999 3.71270 3.72801 4.16440 4.40611 4.58175 4.62554 4.76627 4.79614 4.86430 5.03259 5.17502 5.19623 5.23687 5.31392 5.41461 5.45009 5.52178 5.68904 5.69560 6.05000 6.23656 6.37816 6.38102 6.47166 6.60871 6.96326 7.03255 7.37394 7.79501 7.89678 8.49786 9.03621 9.83491 10.36546 11.25662 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.034297 B = 0.002812 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.207003 B = 9954.862860 C =10032.030941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.383 6.383 3 C 0.160 3.840 4 C 0.170 3.830 5 N -0.447 5.447 6 C 0.177 3.823 7 C 0.153 3.847 8 O -0.370 6.370 9 C 0.078 3.922 10 H 0.071 0.929 11 C -0.128 4.128 12 C 0.145 3.855 13 N -0.602 5.602 14 C -0.334 4.334 15 H 0.067 0.933 16 C -0.027 4.027 17 N -0.922 5.922 18 Si 1.070 2.930 19 H -0.292 1.292 20 H -0.294 1.294 21 H -0.289 1.289 22 C 0.116 3.884 23 N -0.356 5.356 24 O 0.096 5.904 25 H 0.094 0.906 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.029 0.971 35 H 0.059 0.941 36 H 0.269 0.731 37 H 0.036 0.964 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.079 11.381 5.419 27.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.300 6.300 3 C 0.082 3.918 4 C -0.051 4.051 5 N -0.183 5.183 6 C -0.096 4.096 7 C 0.075 3.925 8 O -0.288 6.288 9 C 0.020 3.980 10 H 0.089 0.911 11 C -0.166 4.166 12 C 0.019 3.981 13 N -0.330 5.330 14 C -0.461 4.461 15 H 0.085 0.915 16 C -0.228 4.228 17 N -0.564 5.564 18 Si 0.900 3.100 19 H -0.219 1.219 20 H -0.222 1.222 21 H -0.216 1.216 22 C -0.010 4.010 23 N -0.060 5.060 24 O 0.031 5.969 25 H 0.113 0.887 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.109 0.891 29 H 0.118 0.882 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -22.054 9.753 5.318 24.694 hybrid contribution -1.266 1.693 0.328 2.139 sum -23.319 11.447 5.646 26.584 Atomic orbital electron populations 1.22863 0.78978 1.03861 1.00623 1.87990 1.21073 1.25362 1.95622 1.20560 0.80092 0.86949 1.04206 1.28217 0.97672 0.98249 0.80992 1.71865 1.00320 1.17361 1.28714 1.25496 0.94822 1.01317 0.87967 1.20415 0.88642 0.86331 0.97146 1.87976 1.44676 1.21782 1.74342 1.23291 0.83933 0.98488 0.92258 0.91127 1.22975 0.99230 0.95437 0.98991 1.21619 0.87572 0.99293 0.89576 1.44465 1.23393 1.40530 1.24650 1.19828 0.96968 1.32353 0.96996 0.91497 1.25748 0.99141 1.02242 0.95684 1.70731 1.40056 1.35618 1.10019 0.83460 0.75486 0.76655 0.74376 1.21857 1.22169 1.21600 1.21754 0.90674 0.92424 0.96190 1.74709 0.97235 1.18193 1.15831 1.85327 1.11734 1.64240 1.35606 0.88711 0.93262 0.93232 0.89085 0.88235 0.90121 0.89861 0.90611 0.91219 0.95359 0.92259 0.91921 0.94572 0.95839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.38 -3.29 10.69 -35.23 -0.38 -3.67 16 3 C 0.16 1.05 6.56 36.01 0.24 1.29 16 4 C 0.17 1.92 8.14 -13.06 -0.11 1.81 16 5 N -0.45 -6.25 11.55 -9.87 -0.11 -6.36 16 6 C 0.18 2.68 7.85 -156.37 -1.23 1.45 16 7 C 0.15 2.24 6.43 36.01 0.23 2.47 16 8 O -0.37 -6.72 10.05 -35.23 -0.35 -7.08 16 9 C 0.08 1.46 3.40 -24.90 -0.08 1.38 16 10 H 0.07 1.17 7.88 -51.92 -0.41 0.76 16 11 C -0.13 -2.50 6.82 -24.47 -0.17 -2.67 16 12 C 0.14 3.50 5.22 -2.41 -0.01 3.48 16 13 N -0.60 -16.11 3.33 -169.94 -0.57 -16.67 16 14 C -0.33 -9.84 10.05 -15.06 -0.15 -9.99 16 15 H 0.07 1.97 7.96 -52.49 -0.42 1.55 16 16 C -0.03 -0.80 5.09 -17.43 -0.09 -0.89 16 17 N -0.92 -28.42 12.82 55.49 0.71 -27.71 16 18 Si 1.07 26.21 30.00 -169.99 -5.10 21.11 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 22 C 0.12 2.61 7.01 -3.07 -0.02 2.59 16 23 N -0.36 -5.44 12.16 30.90 0.38 -5.06 16 24 O 0.10 1.22 11.31 18.10 0.20 1.43 16 25 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.12 8.14 -51.93 -0.42 -0.30 16 27 H 0.05 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.08 1.03 8.11 -51.93 -0.42 0.61 16 32 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.03 0.71 6.84 -51.93 -0.36 0.35 16 35 H 0.06 1.56 7.73 -51.93 -0.40 1.16 16 36 H 0.27 8.24 5.83 -40.82 -0.24 8.00 16 37 H 0.04 0.85 8.06 -51.93 -0.42 0.43 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 326.49 15.07 4.92 4.92 Total: -1.00 -36.06 326.49 -5.84 -41.89 By element: Atomic # 1 Polarization: 0.28 SS G_CDS: -5.26 Total: -4.98 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -0.28 Total: 2.18 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.41 Total: -55.81 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.53 Total: -9.32 kcal Atomic # 14 Polarization: 26.21 SS G_CDS: -5.10 Total: 21.11 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.06 -5.84 -41.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222464004.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.414 kcal (2) G-P(sol) polarization free energy of solvation -36.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds