Wall clock time and date at job start Tue Mar 31 2020 05:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99784 * 2 1 4 4 C 1.50698 * 109.47143 * 180.02562 * 3 2 1 5 5 N 1.31136 * 126.54799 * 90.00154 * 4 3 2 6 6 C 1.34490 * 105.61113 * 179.97438 * 5 4 3 7 7 C 1.50707 * 126.28256 * 179.97438 * 6 5 4 8 8 O 1.42899 * 109.46768 * 90.00526 * 7 6 5 9 9 C 1.42900 * 113.99779 * 179.97438 * 8 7 6 10 10 H 1.09002 * 110.88964 * 32.42357 * 9 8 7 11 11 C 1.55157 * 111.03819 * 156.33264 * 9 8 7 12 12 C 1.54334 * 103.02095 * 153.39191 * 11 9 8 13 13 N 1.47014 * 107.26782 * 338.14225 * 12 11 9 14 14 C 1.36945 * 125.64902 * 178.84833 * 13 12 11 15 15 H 1.07997 * 119.99756 * 179.68982 * 14 13 12 16 16 C 1.38805 * 119.99878 * 359.68887 * 14 13 12 17 17 N 1.31624 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47174 * 270.00277 * 18 16 14 20 20 H 1.48501 * 109.47062 * 30.00228 * 18 16 14 21 21 H 1.48499 * 109.46981 * 150.00382 * 18 16 14 22 22 C 1.47428 * 108.70537 * 358.58102 * 13 12 11 23 23 N 1.29939 * 107.42868 * 0.24573 * 6 5 4 24 24 O 1.21307 * 110.24836 * 359.57586 * 23 6 5 25 25 H 1.08996 * 109.47317 * 59.99651 * 1 2 3 26 26 H 1.09002 * 109.46738 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47021 * 299.99544 * 1 2 3 28 28 H 1.09006 * 109.46741 * 60.00125 * 3 2 1 29 29 H 1.08997 * 109.47290 * 300.00706 * 3 2 1 30 30 H 1.08996 * 109.47100 * 330.00604 * 7 6 5 31 31 H 1.08996 * 109.46936 * 210.00114 * 7 6 5 32 32 H 1.08998 * 110.71770 * 271.95360 * 11 9 8 33 33 H 1.09002 * 110.71853 * 35.04793 * 11 9 8 34 34 H 1.08998 * 109.99457 * 218.65928 * 12 11 9 35 35 H 1.09007 * 109.77698 * 97.49747 * 12 11 9 36 36 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 37 37 H 1.09003 * 110.36579 * 143.19056 * 22 13 12 38 38 H 1.08999 * 110.36944 * 265.52330 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2905 1.1251 -1.0545 6 6 5.5430 1.0265 -0.5744 7 6 6.8057 0.9264 -1.3909 8 8 7.3109 2.2378 -1.6495 9 6 8.5137 2.2557 -2.4208 10 1 8.5356 1.4248 -3.1260 11 6 8.6850 3.6122 -3.1543 12 6 10.2150 3.7262 -3.3217 13 7 10.8308 2.8564 -2.3090 14 6 12.1750 2.6578 -2.1383 15 1 12.5289 1.9998 -1.3585 16 6 13.0826 3.3024 -2.9675 17 7 12.6513 4.1048 -3.9176 18 14 14.9162 3.0321 -2.7342 19 1 15.4480 4.0404 -1.7826 20 1 15.1507 1.6690 -2.1935 21 1 15.6073 3.1719 -4.0411 22 6 9.7619 2.2384 -1.5034 23 7 5.4638 1.0275 0.7226 24 8 4.3064 1.1240 1.0725 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6885 1.8463 0.8901 29 1 1.6885 1.8464 -0.8899 30 1 6.5890 0.4277 -2.3355 31 1 7.5504 0.3524 -0.8394 32 1 8.1890 3.5912 -4.1246 33 1 8.3026 4.4310 -2.5448 34 1 10.5311 4.7577 -3.1663 35 1 10.5026 3.3946 -4.3195 36 1 13.2856 4.5554 -4.4968 37 1 10.0273 1.2136 -1.2433 38 1 9.5788 2.8242 -0.6026 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222464005.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:12 Heat of formation + Delta-G solvation = 19.777917 kcal Electronic energy + Delta-G solvation = -21595.194345 eV Core-core repulsion = 18057.125765 eV Total energy + Delta-G solvation = -3538.068580 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.83804 -38.56115 -38.52516 -36.49607 -35.56568 -33.30848 -32.15388 -29.38891 -28.90617 -28.02960 -26.81764 -26.39223 -24.32678 -23.72610 -21.77689 -20.39171 -20.07276 -18.50041 -17.96253 -17.02212 -16.84686 -16.61172 -16.47842 -16.17267 -15.11259 -14.83666 -14.59508 -14.00863 -13.69607 -13.46690 -13.15183 -12.61669 -12.39927 -12.28179 -12.20647 -12.00363 -11.82930 -11.59934 -11.32218 -11.00099 -10.93322 -10.74592 -10.40461 -10.35627 -10.20298 -10.09769 -9.81290 -9.72582 -9.21991 -8.60174 -6.84652 -5.71426 -3.05710 0.79341 1.84568 2.35812 3.12522 3.40977 3.45545 3.47669 3.53884 3.74590 4.23427 4.43546 4.52081 4.62836 4.79500 4.81441 4.86591 5.13406 5.17029 5.30452 5.42094 5.43176 5.49711 5.56336 5.72725 5.74413 5.80603 6.22410 6.36469 6.43826 6.52000 6.64775 6.67917 7.45035 7.55007 7.60682 7.81674 7.93534 8.24772 9.21154 9.81033 10.46402 11.40348 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.055950 B = 0.002623 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.324347 B =10672.510856 C =10966.698754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.160 3.840 4 C 0.170 3.830 5 N -0.447 5.447 6 C 0.178 3.822 7 C 0.154 3.846 8 O -0.373 6.373 9 C 0.073 3.927 10 H 0.072 0.928 11 C -0.136 4.136 12 C 0.179 3.821 13 N -0.604 5.604 14 C -0.228 4.228 15 H 0.079 0.921 16 C -0.009 4.009 17 N -0.923 5.923 18 Si 0.914 3.086 19 H -0.288 1.288 20 H -0.281 1.281 21 H -0.290 1.290 22 C 0.117 3.883 23 N -0.356 5.356 24 O 0.095 5.905 25 H 0.049 0.951 26 H 0.094 0.906 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.253 0.747 37 H 0.039 0.961 38 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.686 -6.370 6.332 26.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.302 6.302 3 C 0.082 3.918 4 C -0.052 4.052 5 N -0.183 5.183 6 C -0.095 4.095 7 C 0.075 3.925 8 O -0.291 6.291 9 C 0.015 3.985 10 H 0.090 0.910 11 C -0.174 4.174 12 C 0.054 3.946 13 N -0.332 5.332 14 C -0.356 4.356 15 H 0.096 0.904 16 C -0.205 4.205 17 N -0.570 5.570 18 Si 0.745 3.255 19 H -0.216 1.216 20 H -0.207 1.207 21 H -0.216 1.216 22 C -0.010 4.010 23 N -0.061 5.061 24 O 0.030 5.970 25 H 0.068 0.932 26 H 0.112 0.888 27 H 0.068 0.932 28 H 0.110 0.890 29 H 0.118 0.882 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -23.631 -6.374 6.346 25.285 hybrid contribution 0.744 -0.058 0.085 0.751 sum -22.888 -6.432 6.431 24.629 Atomic orbital electron populations 1.22859 0.78994 1.03753 1.00738 1.87953 1.21072 1.25552 1.95663 1.20564 0.80125 0.86771 1.04363 1.28177 0.97587 0.98364 0.81026 1.71869 1.00424 1.17246 1.28720 1.25524 0.94760 1.01204 0.87964 1.20404 0.87425 0.87532 0.97129 1.87921 1.42295 1.24474 1.74363 1.23530 0.82914 0.99412 0.92659 0.90958 1.22991 1.00289 0.95210 0.98935 1.21185 0.84430 0.95546 0.93429 1.44359 1.01045 1.51897 1.35872 1.19067 0.79973 1.23200 1.13403 0.90352 1.24825 0.98231 0.99414 0.98051 1.69957 1.32567 1.33108 1.21394 0.86082 0.84805 0.77730 0.76924 1.21566 1.20668 1.21638 1.21949 0.88257 0.96769 0.94026 1.74707 0.97119 1.18423 1.15840 1.85321 1.11805 1.64237 1.35617 0.93190 0.88787 0.93233 0.89027 0.88172 0.89890 0.90131 0.91587 0.91498 0.93499 0.93151 0.93683 0.94257 0.95393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.38 -3.03 10.69 -35.23 -0.38 -3.40 16 3 C 0.16 1.06 6.56 36.00 0.24 1.30 16 4 C 0.17 1.92 8.14 -13.06 -0.11 1.82 16 5 N -0.45 -6.31 11.55 -9.87 -0.11 -6.42 16 6 C 0.18 2.71 7.85 -156.38 -1.23 1.49 16 7 C 0.15 2.28 6.44 36.01 0.23 2.51 16 8 O -0.37 -6.68 10.14 -35.23 -0.36 -7.04 16 9 C 0.07 1.38 3.49 -24.58 -0.09 1.30 16 10 H 0.07 1.28 7.90 -51.93 -0.41 0.87 16 11 C -0.14 -2.71 6.69 -24.89 -0.17 -2.88 16 12 C 0.18 4.46 5.38 -3.06 -0.02 4.44 16 13 N -0.60 -15.98 3.39 -170.06 -0.58 -16.56 16 14 C -0.23 -6.51 10.28 -15.06 -0.15 -6.66 16 15 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 16 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 17 N -0.92 -27.42 10.31 55.49 0.57 -26.85 16 18 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 C 0.12 2.57 6.97 -2.52 -0.02 2.55 16 23 N -0.36 -5.43 12.16 30.89 0.38 -5.05 16 24 O 0.09 1.21 11.31 18.13 0.20 1.41 16 25 H 0.05 0.14 8.14 -51.93 -0.42 -0.29 16 26 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.11 8.14 -51.93 -0.42 -0.31 16 28 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 1.08 8.11 -51.93 -0.42 0.65 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.05 1.28 7.52 -51.93 -0.39 0.89 16 35 H 0.05 1.36 7.37 -51.93 -0.38 0.97 16 36 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 327.16 15.07 4.93 4.93 Total: -1.00 -34.25 327.16 -6.03 -40.29 By element: Atomic # 1 Polarization: -0.02 SS G_CDS: -5.38 Total: -5.40 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -0.29 Total: 6.74 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.26 Total: -54.88 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.53 Total: -9.03 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.25 -6.03 -40.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222464005.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.063 kcal (2) G-P(sol) polarization free energy of solvation -34.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds