Wall clock time and date at job start Tue Mar 31 2020 05:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99784 * 2 1 4 4 C 1.50698 * 109.47143 * 180.02562 * 3 2 1 5 5 N 1.31136 * 126.54799 * 90.00154 * 4 3 2 6 6 C 1.34490 * 105.61113 * 179.97438 * 5 4 3 7 7 C 1.50707 * 126.28256 * 179.97438 * 6 5 4 8 8 O 1.42899 * 109.46768 * 90.00526 * 7 6 5 9 9 C 1.42900 * 113.99779 * 179.97438 * 8 7 6 10 10 H 1.09002 * 110.88964 * 32.42357 * 9 8 7 11 11 C 1.55157 * 111.03819 * 156.33264 * 9 8 7 12 12 C 1.54334 * 103.02095 * 153.39191 * 11 9 8 13 13 N 1.47014 * 107.26782 * 338.14225 * 12 11 9 14 14 C 1.36945 * 125.64902 * 178.84833 * 13 12 11 15 15 H 1.07997 * 119.99756 * 179.68982 * 14 13 12 16 16 C 1.38805 * 119.99878 * 359.68887 * 14 13 12 17 17 N 1.31624 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47174 * 270.00277 * 18 16 14 20 20 H 1.48501 * 109.47062 * 30.00228 * 18 16 14 21 21 H 1.48499 * 109.46981 * 150.00382 * 18 16 14 22 22 C 1.47428 * 108.70537 * 358.58102 * 13 12 11 23 23 N 1.29939 * 107.42868 * 0.24573 * 6 5 4 24 24 O 1.21307 * 110.24836 * 359.57586 * 23 6 5 25 25 H 1.08996 * 109.47317 * 59.99651 * 1 2 3 26 26 H 1.09002 * 109.46738 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47021 * 299.99544 * 1 2 3 28 28 H 1.09006 * 109.46741 * 60.00125 * 3 2 1 29 29 H 1.08997 * 109.47290 * 300.00706 * 3 2 1 30 30 H 1.08996 * 109.47100 * 330.00604 * 7 6 5 31 31 H 1.08996 * 109.46936 * 210.00114 * 7 6 5 32 32 H 1.08998 * 110.71770 * 271.95360 * 11 9 8 33 33 H 1.09002 * 110.71853 * 35.04793 * 11 9 8 34 34 H 1.08998 * 109.99457 * 218.65928 * 12 11 9 35 35 H 1.09007 * 109.77698 * 97.49747 * 12 11 9 36 36 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 37 37 H 1.09003 * 110.36579 * 143.19056 * 22 13 12 38 38 H 1.08999 * 110.36944 * 265.52330 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2905 1.1251 -1.0545 6 6 5.5430 1.0265 -0.5744 7 6 6.8057 0.9264 -1.3909 8 8 7.3109 2.2378 -1.6495 9 6 8.5137 2.2557 -2.4208 10 1 8.5356 1.4248 -3.1260 11 6 8.6850 3.6122 -3.1543 12 6 10.2150 3.7262 -3.3217 13 7 10.8308 2.8564 -2.3090 14 6 12.1750 2.6578 -2.1383 15 1 12.5289 1.9998 -1.3585 16 6 13.0826 3.3024 -2.9675 17 7 12.6513 4.1048 -3.9176 18 14 14.9162 3.0321 -2.7342 19 1 15.4480 4.0404 -1.7826 20 1 15.1507 1.6690 -2.1935 21 1 15.6073 3.1719 -4.0411 22 6 9.7619 2.2384 -1.5034 23 7 5.4638 1.0275 0.7226 24 8 4.3064 1.1240 1.0725 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6885 1.8463 0.8901 29 1 1.6885 1.8464 -0.8899 30 1 6.5890 0.4277 -2.3355 31 1 7.5504 0.3524 -0.8394 32 1 8.1890 3.5912 -4.1246 33 1 8.3026 4.4310 -2.5448 34 1 10.5311 4.7577 -3.1663 35 1 10.5026 3.3946 -4.3195 36 1 13.2856 4.5554 -4.4968 37 1 10.0273 1.2136 -1.2433 38 1 9.5788 2.8242 -0.6026 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222464005.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:12 Heat of formation + Delta-G solvation = -6.502692 kcal Electronic energy + Delta-G solvation = -21596.333958 eV Core-core repulsion = 18057.125765 eV Total energy + Delta-G solvation = -3539.208193 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -46.86541 -40.06993 -39.02077 -37.97894 -36.82570 -34.45594 -33.98725 -31.23808 -29.66092 -29.33023 -28.44769 -26.79960 -26.31028 -24.75157 -22.75712 -22.10755 -21.90391 -19.51217 -19.06411 -18.88360 -17.97870 -17.36550 -17.21160 -16.78520 -16.68853 -16.50230 -15.95186 -15.67415 -15.16749 -14.42358 -14.25896 -13.94599 -13.89425 -13.64401 -13.34348 -13.14033 -12.97175 -12.91935 -12.77072 -12.47057 -12.39819 -12.23553 -12.10714 -12.04191 -11.81032 -11.55173 -11.26924 -10.79423 -10.75164 -10.68345 -8.96380 -7.88126 -5.25536 -0.13242 0.79742 1.45525 1.47938 1.56701 1.58367 2.12229 2.46840 2.64918 2.99909 3.11232 3.30652 3.69846 3.72641 3.74874 3.99545 4.07226 4.12121 4.12927 4.28608 4.35016 4.51381 4.56407 4.57155 4.65412 4.69363 4.78868 4.89198 4.95501 4.96379 5.00201 5.41019 5.59062 5.69432 5.99918 6.02061 6.17414 6.94908 7.05775 7.71074 8.35390 9.22384 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.055950 B = 0.002623 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.324347 B =10672.510856 C =10966.698754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.414 6.414 3 C 0.159 3.841 4 C 0.184 3.816 5 N -0.472 5.472 6 C 0.163 3.837 7 C 0.149 3.851 8 O -0.383 6.383 9 C 0.092 3.908 10 H 0.092 0.908 11 C -0.124 4.124 12 C 0.187 3.813 13 N -0.625 5.625 14 C -0.247 4.247 15 H 0.083 0.917 16 C -0.066 4.066 17 N -0.951 5.951 18 Si 0.983 3.017 19 H -0.287 1.287 20 H -0.267 1.267 21 H -0.291 1.291 22 C 0.113 3.887 23 N -0.380 5.380 24 O 0.097 5.903 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.127 0.873 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.011 0.989 35 H 0.024 0.976 36 H 0.249 0.751 37 H 0.050 0.950 38 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.411 -7.201 6.837 28.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.333 6.333 3 C 0.081 3.919 4 C -0.037 4.037 5 N -0.207 5.207 6 C -0.110 4.110 7 C 0.072 3.928 8 O -0.300 6.300 9 C 0.034 3.966 10 H 0.110 0.890 11 C -0.162 4.162 12 C 0.062 3.938 13 N -0.353 5.353 14 C -0.375 4.375 15 H 0.101 0.899 16 C -0.259 4.259 17 N -0.600 5.600 18 Si 0.811 3.189 19 H -0.214 1.214 20 H -0.192 1.192 21 H -0.218 1.218 22 C -0.013 4.013 23 N -0.085 5.085 24 O 0.033 5.967 25 H 0.080 0.920 26 H 0.116 0.884 27 H 0.086 0.914 28 H 0.145 0.855 29 H 0.137 0.863 30 H 0.122 0.878 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.029 0.971 35 H 0.042 0.958 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -25.396 -7.225 6.869 27.283 hybrid contribution 1.129 0.181 0.008 1.144 sum -24.267 -7.044 6.877 26.188 Atomic orbital electron populations 1.23072 0.76947 1.04580 1.02237 1.87898 1.23252 1.26189 1.95997 1.20977 0.76991 0.86944 1.06991 1.29149 0.99129 0.95567 0.79862 1.71866 1.00333 1.18713 1.29814 1.25613 0.95322 1.01940 0.88126 1.20602 0.87656 0.86210 0.98362 1.87889 1.41363 1.26581 1.74200 1.23207 0.82152 0.99260 0.91959 0.89023 1.22818 0.96494 0.96130 1.00751 1.20932 0.87767 0.93202 0.91923 1.44661 1.01481 1.52506 1.36676 1.19464 0.81423 1.23154 1.13482 0.89900 1.25717 1.02748 0.99425 0.98004 1.70171 1.33701 1.33952 1.22136 0.85012 0.79194 0.78106 0.76594 1.21366 1.19211 1.21760 1.22085 0.88720 0.96679 0.93834 1.74684 0.98420 1.19325 1.16112 1.85284 1.11380 1.64073 1.35973 0.92017 0.88408 0.91383 0.85534 0.86330 0.87809 0.89393 0.88828 0.91345 0.97112 0.95755 0.94167 0.93128 0.96386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 113.37 1.25 1.39 16 2 O -0.41 -5.60 10.69 -148.98 -1.59 -7.19 16 3 C 0.16 1.66 6.56 71.24 0.47 2.13 16 4 C 0.18 3.84 8.14 88.38 0.72 4.56 16 5 N -0.47 -12.66 11.55 -303.22 -3.50 -16.16 16 6 C 0.16 4.77 7.85 138.47 1.09 5.86 16 7 C 0.15 4.20 6.44 71.24 0.46 4.66 16 8 O -0.38 -13.09 10.14 -148.98 -1.51 -14.60 16 9 C 0.09 3.37 3.49 31.99 0.11 3.48 16 10 H 0.09 3.01 7.90 -2.39 -0.02 3.00 16 11 C -0.12 -4.83 6.69 31.79 0.21 -4.62 16 12 C 0.19 9.51 5.38 86.73 0.47 9.98 16 13 N -0.63 -33.47 3.39 -691.95 -2.35 -35.82 16 14 C -0.25 -14.19 10.28 84.03 0.86 -13.33 16 15 H 0.08 4.55 7.83 -2.91 -0.02 4.53 16 16 C -0.07 -3.82 5.49 84.86 0.47 -3.35 16 17 N -0.95 -57.91 10.31 21.65 0.22 -57.69 16 18 Si 0.98 46.35 29.55 68.60 2.03 48.37 16 19 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 22 C 0.11 4.91 6.97 86.86 0.61 5.51 16 23 N -0.38 -11.28 12.16 -60.34 -0.73 -12.02 16 24 O 0.10 2.37 11.31 74.93 0.85 3.22 16 25 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 26 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.07 0.09 8.14 -2.39 -0.02 0.08 16 28 H 0.13 0.43 8.14 -2.38 -0.02 0.41 16 29 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.10 2.46 8.11 -2.39 -0.02 2.44 16 31 H 0.09 2.31 8.14 -2.39 -0.02 2.30 16 32 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 33 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.01 0.61 7.52 -2.39 -0.02 0.59 16 35 H 0.02 1.35 7.37 -2.38 -0.02 1.33 16 36 H 0.25 14.67 8.31 -92.71 -0.77 13.89 16 37 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -75.07 327.16 1.17 -73.90 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: 1.06 Total: 1.72 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: 6.71 Total: 16.27 kcal Atomic # 7 Polarization: -115.32 SS G_CDS: -6.36 Total: -121.68 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -2.26 Total: -18.57 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.37 kcal Total: -75.07 1.17 -73.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222464005.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.396 kcal (2) G-P(sol) polarization free energy of solvation -75.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds