Wall clock time and date at job start Tue Mar 31 2020 05:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 113.99993 * 2 1 4 4 C 1.50698 * 109.47009 * 180.02562 * 3 2 1 5 5 N 1.31128 * 126.55266 * 90.25725 * 4 3 2 6 6 C 1.34487 * 105.61720 * 180.12157 * 5 4 3 7 7 C 1.50701 * 126.28974 * 179.89884 * 6 5 4 8 8 O 1.42899 * 109.47741 * 269.71445 * 7 6 5 9 9 C 1.42895 * 114.00481 * 179.97438 * 8 7 6 10 10 C 1.53514 * 114.17121 * 210.00069 * 9 8 7 11 11 N 1.47483 * 87.92777 * 220.32774 * 10 9 8 12 12 C 1.46903 * 110.99717 * 138.70421 * 11 10 9 13 13 C 1.50694 * 109.47066 * 169.99804 * 12 11 10 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.47480 * 87.83900 * 27.00973 * 11 10 9 22 22 N 1.29947 * 107.42662 * 359.64017 * 6 5 4 23 23 O 1.21305 * 110.24733 * 0.22335 * 22 6 5 24 24 H 1.08993 * 109.47072 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46863 * 299.99516 * 1 2 3 26 26 H 1.08996 * 109.46943 * 59.99511 * 1 2 3 27 27 H 1.09004 * 109.46927 * 59.99938 * 3 2 1 28 28 H 1.09004 * 109.47567 * 300.00501 * 3 2 1 29 29 H 1.09006 * 109.47069 * 149.71213 * 7 6 5 30 30 H 1.09002 * 109.46895 * 29.71407 * 7 6 5 31 31 H 1.09002 * 113.38161 * 343.08499 * 9 8 7 32 32 H 1.09000 * 113.47331 * 105.56452 * 10 9 8 33 33 H 1.08995 * 113.52785 * 335.10042 * 10 9 8 34 34 H 1.09007 * 109.47052 * 49.99488 * 12 11 10 35 35 H 1.09003 * 109.46808 * 290.00181 * 12 11 10 36 36 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 37 37 H 1.09004 * 113.47132 * 87.75237 * 21 11 10 38 38 H 1.09000 * 113.47538 * 218.21976 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2910 1.1296 -1.0543 6 6 5.5430 1.0255 -0.5743 7 6 6.8058 0.9259 -1.3907 8 8 7.0992 -0.4486 -1.6489 9 6 8.2837 -0.6551 -2.4210 10 6 8.2512 -1.9152 -3.2972 11 7 9.6614 -2.1421 -2.9298 12 6 9.9138 -3.5646 -2.6641 13 6 11.3973 -3.7960 -2.5348 14 1 12.0840 -2.9691 -2.6400 15 6 11.8780 -5.0636 -2.2833 16 7 11.0418 -6.0707 -2.1557 17 14 13.7169 -5.3504 -2.1238 18 1 13.9721 -6.7885 -1.8550 19 1 14.3909 -4.9552 -3.3865 20 1 14.2495 -4.5357 -1.0023 21 6 9.3949 -1.4097 -1.6778 22 7 5.4643 1.0320 0.7227 23 8 4.3064 1.1238 1.0726 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8465 -0.8899 29 1 7.6313 1.3763 -0.8393 30 1 6.6700 1.4521 -2.3356 31 1 8.6232 0.2411 -2.9404 32 1 8.1071 -1.7037 -4.3567 33 1 7.5762 -2.6862 -2.9256 34 1 9.5231 -4.1630 -3.4872 35 1 9.4187 -3.8545 -1.7373 36 1 11.3801 -6.9625 -1.9792 37 1 9.0250 -2.0454 -0.8733 38 1 10.2201 -0.7699 -1.3649 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222469205.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:08 Heat of formation + Delta-G solvation = 32.656025 kcal Electronic energy + Delta-G solvation = -21279.889405 eV Core-core repulsion = 17742.379262 eV Total energy + Delta-G solvation = -3537.510144 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.90302 -39.61197 -38.54530 -37.16565 -35.79713 -33.35199 -32.79409 -29.46458 -28.90767 -27.82165 -26.39652 -25.41032 -24.92220 -23.82012 -21.86275 -21.58731 -19.50068 -18.57460 -17.97054 -17.04477 -16.76904 -16.62666 -16.26709 -16.14640 -15.58513 -15.14405 -14.54761 -14.34169 -13.82244 -13.50769 -13.36029 -13.09752 -12.53866 -12.29589 -12.16643 -12.06258 -11.85287 -11.81573 -11.43761 -11.26578 -11.18311 -10.84604 -10.58105 -10.39790 -10.36708 -10.19005 -9.74799 -9.27253 -9.20952 -8.41670 -7.93319 -6.01324 -4.02921 0.73265 1.74783 2.32066 3.10314 3.35613 3.38865 3.42007 3.43895 3.70379 4.09723 4.39395 4.45156 4.56372 4.73908 4.79922 4.80692 4.87076 4.96267 5.01769 5.20895 5.24144 5.29100 5.33768 5.40208 5.66258 5.82562 6.07971 6.16915 6.30505 6.37455 6.38212 6.58643 7.19304 7.27132 7.65600 7.86030 7.86192 8.10839 8.45603 9.03854 9.60810 11.09821 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.029098 B = 0.002609 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.034540 B =10729.596137 C =11060.183843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.382 6.382 3 C 0.160 3.840 4 C 0.172 3.828 5 N -0.447 5.447 6 C 0.175 3.825 7 C 0.154 3.846 8 O -0.368 6.368 9 C 0.052 3.948 10 C -0.001 4.001 11 N -0.463 5.463 12 C 0.161 3.839 13 C -0.506 4.506 14 H 0.063 0.937 15 C 0.053 3.947 16 N -0.900 5.900 17 Si 0.901 3.099 18 H -0.288 1.288 19 H -0.276 1.276 20 H -0.277 1.277 21 C -0.005 4.005 22 N -0.356 5.356 23 O 0.095 5.905 24 H 0.095 0.905 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.030 0.970 35 H 0.005 0.995 36 H 0.262 0.738 37 H 0.072 0.928 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.220 18.452 4.414 28.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.300 6.300 3 C 0.081 3.919 4 C -0.049 4.049 5 N -0.182 5.182 6 C -0.098 4.098 7 C 0.075 3.925 8 O -0.285 6.285 9 C -0.006 4.006 10 C -0.131 4.131 11 N -0.187 5.187 12 C 0.035 3.965 13 C -0.545 4.545 14 H 0.081 0.919 15 C -0.148 4.148 16 N -0.539 5.539 17 Si 0.729 3.271 18 H -0.213 1.213 19 H -0.201 1.201 20 H -0.202 1.202 21 C -0.134 4.134 22 N -0.061 5.061 23 O 0.031 5.969 24 H 0.113 0.887 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.109 0.891 28 H 0.118 0.882 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.023 0.977 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.838 18.016 4.123 27.113 hybrid contribution 0.143 -0.415 0.657 0.790 sum -19.695 17.601 4.780 26.843 Atomic orbital electron populations 1.22867 0.78939 1.03908 1.00617 1.87997 1.21105 1.25296 1.95621 1.20568 0.80078 0.87006 1.04215 1.28221 0.97679 0.98097 0.80943 1.71863 1.00323 1.17370 1.28690 1.25511 0.94882 1.01405 0.88013 1.20440 0.88656 0.86222 0.97142 1.88028 1.45020 1.21984 1.73494 1.24139 0.84540 0.98301 0.93583 1.24057 0.93786 0.95566 0.99647 1.68981 1.16364 1.15623 1.17762 1.20268 0.97832 0.82321 0.96052 1.21053 0.91500 0.93850 1.48063 0.91866 1.25021 0.98268 0.96003 0.95483 1.69954 1.34387 1.00128 1.49458 0.86509 0.85050 0.76897 0.78650 1.21330 1.20126 1.20246 1.24266 0.96370 0.97718 0.95059 1.74704 0.97334 1.18239 1.15784 1.85325 1.11724 1.64245 1.35630 0.88677 0.93253 0.93224 0.89077 0.88224 0.90090 0.89729 0.88221 0.90053 0.91199 0.95169 0.97674 0.92820 0.90980 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.38 -3.25 10.69 -35.23 -0.38 -3.63 16 3 C 0.16 1.00 6.56 36.00 0.24 1.24 16 4 C 0.17 1.86 8.14 -13.06 -0.11 1.75 16 5 N -0.45 -5.97 11.55 -9.87 -0.11 -6.08 16 6 C 0.17 2.48 7.85 -156.38 -1.23 1.25 16 7 C 0.15 2.00 6.40 36.01 0.23 2.23 16 8 O -0.37 -6.13 10.37 -35.23 -0.37 -6.49 16 9 C 0.05 0.86 4.65 -26.20 -0.12 0.74 16 10 C 0.00 -0.02 7.52 -7.53 -0.06 -0.08 16 11 N -0.46 -10.49 6.32 -246.08 -1.55 -12.05 16 12 C 0.16 4.40 4.57 -4.98 -0.02 4.37 16 13 C -0.51 -14.85 9.39 -34.44 -0.32 -15.17 16 14 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 15 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 17 Si 0.90 22.26 29.54 -169.99 -5.02 17.23 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 C 0.00 -0.09 7.55 -7.54 -0.06 -0.15 16 22 N -0.36 -5.14 12.16 30.90 0.38 -4.77 16 23 O 0.10 1.16 11.31 18.10 0.20 1.37 16 24 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.12 8.14 -51.93 -0.42 -0.30 16 26 H 0.05 0.15 8.14 -51.93 -0.42 -0.28 16 27 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.10 1.37 7.88 -51.93 -0.41 0.96 16 32 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 33 H 0.07 1.40 7.91 -51.93 -0.41 0.99 16 34 H 0.03 0.87 8.08 -51.92 -0.42 0.45 16 35 H 0.01 0.16 7.30 -51.93 -0.38 -0.22 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.07 1.54 7.42 -51.93 -0.39 1.16 16 38 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 333.64 15.07 5.03 5.03 Total: -1.00 -35.41 333.64 -6.87 -42.28 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: -5.35 Total: -5.00 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -0.43 Total: -1.09 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: -0.56 Total: -49.70 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -0.54 Total: -8.75 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.41 -6.87 -42.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222469205.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.941 kcal (2) G-P(sol) polarization free energy of solvation -35.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds