Wall clock time and date at job start Tue Mar 31 2020 05:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45192 * 109.47109 * 2 1 4 4 C 1.34230 * 117.00018 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00015 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00046 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47212 * 179.97438 * 6 4 3 8 8 H 1.09008 * 109.47017 * 54.99761 * 7 6 4 9 9 C 1.50698 * 109.47721 * 174.99887 * 7 6 4 10 10 H 1.07994 * 120.00417 * 240.00789 * 9 7 6 11 11 C 1.37880 * 119.99699 * 59.99248 * 9 7 6 12 12 N 1.31511 * 120.00362 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 119.99897 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47085 * 60.00587 * 13 11 9 15 15 H 1.48501 * 109.47121 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47160 * 300.00632 * 13 11 9 17 17 O 1.42903 * 109.47386 * 295.00166 * 7 6 4 18 18 C 1.42900 * 114.00543 * 149.99728 * 17 7 6 19 19 C 1.52992 * 109.47163 * 179.97438 * 18 17 7 20 20 N 1.46498 * 109.47164 * 180.02562 * 19 18 17 21 21 N 1.28602 * 124.62041 * 269.70338 * 20 19 18 22 22 C 1.31386 * 108.71868 * 179.82797 * 21 20 19 23 23 C 1.39678 * 105.89831 * 0.40996 * 22 21 20 24 24 N 1.28605 * 124.62045 * 89.99770 * 20 19 18 25 25 H 1.08998 * 109.47698 * 59.99951 * 1 2 3 26 26 H 1.08998 * 109.47218 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47066 * 299.99718 * 1 2 3 28 28 H 1.09001 * 109.46829 * 239.99566 * 2 1 3 29 29 H 1.08998 * 109.47230 * 120.00301 * 2 1 3 30 30 H 1.09002 * 109.47060 * 299.99765 * 6 4 3 31 31 H 1.09001 * 109.47380 * 59.99853 * 6 4 3 32 32 H 0.96992 * 120.00719 * 179.97438 * 12 11 9 33 33 H 1.09004 * 109.46816 * 300.00223 * 18 17 7 34 34 H 1.09002 * 109.46675 * 60.00118 * 18 17 7 35 35 H 1.09004 * 109.47509 * 299.99887 * 19 18 17 36 36 H 1.09002 * 109.47216 * 59.99948 * 19 18 17 37 37 H 1.07997 * 127.04465 * 180.16072 * 22 21 20 38 38 H 1.08000 * 127.04610 * 179.76731 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 -0.0001 8 1 5.7805 2.2499 -0.8423 9 6 6.0244 4.2445 -0.1234 10 1 6.6590 4.4932 -0.9611 11 6 5.7407 5.1961 0.8331 12 7 4.9681 4.8932 1.8533 13 14 6.4539 6.9158 0.6799 14 1 5.9900 7.5329 -0.5886 15 1 6.0022 7.7430 1.8275 16 1 7.9369 6.8385 0.6794 17 8 5.8946 2.2632 1.2206 18 6 7.1178 1.5343 1.0995 19 6 7.4976 0.9459 2.4597 20 7 8.7519 0.1992 2.3357 21 7 8.8320 -1.0525 2.0517 22 6 10.0995 -1.3967 2.0167 23 6 10.8191 -0.2378 2.3170 24 7 9.9227 0.7048 2.5014 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.5844 3.4700 -0.8895 31 1 3.5852 3.4690 0.8905 32 1 4.7688 5.5625 2.5264 33 1 6.9902 0.7280 0.3772 34 1 7.9079 2.2043 0.7604 35 1 7.6254 1.7526 3.1817 36 1 6.7076 0.2761 2.7993 37 1 10.5021 -2.3759 1.8037 38 1 11.8923 -0.1372 2.3836 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225040253.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:35 Heat of formation + Delta-G solvation = -24.964112 kcal Electronic energy + Delta-G solvation = -22413.957132 eV Core-core repulsion = 18873.948392 eV Total energy + Delta-G solvation = -3540.008740 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.27359 -39.71655 -37.09089 -35.79089 -34.04410 -32.65107 -32.16653 -31.55487 -30.23602 -28.38022 -26.11975 -23.51357 -23.03663 -22.62865 -21.63196 -20.78767 -19.80401 -17.34607 -17.02378 -16.43615 -16.24425 -16.07765 -15.55048 -15.21771 -14.95058 -14.50873 -14.17386 -14.04225 -13.59256 -13.34936 -12.82080 -12.69982 -12.27498 -11.85074 -11.58453 -11.41338 -11.36842 -11.14278 -11.00313 -10.94558 -10.76691 -10.57314 -10.51506 -10.11943 -10.10433 -9.91346 -9.58609 -9.29194 -9.08442 -8.66998 -8.06302 -6.14490 -4.33426 2.09279 2.58593 2.67961 3.07740 3.23600 3.29918 3.31984 3.38774 4.30943 4.45047 4.86060 5.10457 5.12574 5.16759 5.22687 5.41443 5.43499 5.49345 5.51442 5.74781 5.76694 5.91583 5.96494 6.10168 6.20945 6.27651 6.39636 6.44927 6.50420 6.65073 6.82548 7.03754 7.05680 7.42418 7.73067 8.04695 8.47180 8.59078 8.60860 8.86679 9.43089 10.87371 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.009718 B = 0.006249 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.649514 B = 4479.350093 C = 7043.140119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.368 6.368 4 C 0.458 3.542 5 O -0.516 6.516 6 C -0.101 4.101 7 C 0.236 3.764 8 H 0.016 0.984 9 C -0.561 4.561 10 H 0.061 0.939 11 C 0.087 3.913 12 N -0.859 5.859 13 Si 0.891 3.109 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.275 1.275 17 O -0.360 6.360 18 C 0.069 3.931 19 C 0.141 3.859 20 N -0.140 5.140 21 N -0.287 5.287 22 C -0.040 4.040 23 C -0.039 4.039 24 N -0.284 5.284 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.139 0.861 32 H 0.265 0.735 33 H 0.039 0.961 34 H 0.047 0.953 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.193 0.807 38 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.080 -8.770 -0.249 8.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.286 6.286 4 C 0.303 3.697 5 O -0.404 6.404 6 C -0.139 4.139 7 C 0.180 3.820 8 H 0.034 0.966 9 C -0.598 4.598 10 H 0.079 0.921 11 C -0.119 4.119 12 N -0.495 5.495 13 Si 0.718 3.282 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.200 1.200 17 O -0.279 6.279 18 C -0.010 4.010 19 C 0.022 3.978 20 N -0.043 5.043 21 N -0.128 5.128 22 C -0.222 4.222 23 C -0.222 4.222 24 N -0.125 5.125 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.156 0.844 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.132 0.868 36 H 0.127 0.873 37 H 0.210 0.790 38 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -1.301 -8.272 0.221 8.377 hybrid contribution 1.438 0.208 -0.347 1.494 sum 0.137 -8.064 -0.126 8.066 Atomic orbital electron populations 1.21777 0.93383 1.02271 1.03301 1.22833 0.94795 0.81936 1.01962 1.86586 1.26367 1.30849 1.84794 1.24975 0.79319 0.94414 0.71011 1.90567 1.60207 1.43673 1.45955 1.21890 0.97468 0.87787 1.06763 1.19346 0.88069 0.91893 0.82737 0.96589 1.21437 1.32726 0.95733 1.09952 0.92092 1.24995 0.93872 0.98602 0.94479 1.69857 1.34578 1.34219 1.10797 0.86680 0.79847 0.83870 0.77754 1.20011 1.21023 1.20045 1.87921 1.35899 1.68445 1.35610 1.22132 0.90927 0.94931 0.93000 1.21888 0.78703 0.95963 1.01248 1.48204 1.06433 1.03882 1.45825 1.74102 1.22783 0.98580 1.17375 1.24748 0.88720 1.01564 1.07151 1.24758 1.00804 0.89934 1.06668 1.74128 0.91773 1.27976 1.18624 0.91745 0.90900 0.91613 0.91979 0.91779 0.88610 0.84376 0.92475 0.94325 0.93433 0.86801 0.87277 0.78964 0.78939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 10.29 37.16 0.38 -1.27 16 2 C 0.06 0.88 6.19 37.16 0.23 1.11 16 3 O -0.37 -6.85 10.22 -39.26 -0.40 -7.25 16 4 C 0.46 9.77 7.84 36.01 0.28 10.06 16 5 O -0.52 -11.93 15.17 -24.05 -0.36 -12.30 16 6 C -0.10 -2.29 5.22 -27.88 -0.15 -2.43 16 7 C 0.24 5.81 1.82 -27.89 -0.05 5.76 16 8 H 0.02 0.40 7.60 -51.92 -0.39 0.00 16 9 C -0.56 -14.66 8.90 -34.44 -0.31 -14.97 16 10 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 11 C 0.09 2.26 5.24 -17.82 -0.09 2.16 16 12 N -0.86 -22.72 10.93 55.43 0.61 -22.11 16 13 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 14 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 O -0.36 -8.89 8.61 -49.68 -0.43 -9.32 16 18 C 0.07 1.51 6.06 37.15 0.23 1.73 16 19 C 0.14 2.64 6.91 -4.05 -0.03 2.62 16 20 N -0.14 -2.55 3.95 -10.62 -0.04 -2.60 16 21 N -0.29 -4.97 12.05 30.68 0.37 -4.60 16 22 C -0.04 -0.54 12.20 -17.21 -0.21 -0.75 16 23 C -0.04 -0.54 12.20 -17.21 -0.21 -0.75 16 24 N -0.28 -4.98 12.05 30.67 0.37 -4.61 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 29 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 30 H 0.10 1.99 8.14 -51.93 -0.42 1.57 16 31 H 0.14 3.38 6.22 -51.93 -0.32 3.06 16 32 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 33 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 34 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.11 2.08 8.14 -51.93 -0.42 1.66 16 36 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 37 H 0.19 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.19 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 334.10 15.07 5.03 5.03 Total: -1.00 -30.88 334.10 -5.13 -36.02 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.33 Total: 3.32 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 0.08 Total: 3.27 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 1.30 Total: -33.91 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -1.19 Total: -28.87 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.88 -5.13 -36.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225040253.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.054 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds