Wall clock time and date at job start Tue Mar 31 2020 06:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 119.99836 * 2 1 4 4 H 1.48503 * 109.47276 * 270.00060 * 3 2 1 5 5 H 1.48506 * 109.47217 * 29.99888 * 3 2 1 6 6 H 1.48497 * 109.47454 * 149.99914 * 3 2 1 7 7 C 1.37874 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00107 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00074 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47040 * 180.02562 * 9 7 2 11 11 C 1.47965 * 110.99653 * 170.00384 * 10 9 7 12 12 C 1.53937 * 86.18122 * 222.41929 * 11 10 9 13 13 O 1.42896 * 113.73698 * 138.07651 * 12 11 10 14 14 C 1.35808 * 117.00060 * 158.04143 * 13 12 11 15 15 C 1.36674 * 120.22378 * 6.11409 * 14 13 12 16 16 C 1.39192 * 120.91375 * 179.97438 * 15 14 13 17 17 C 1.36174 * 121.06364 * 0.06672 * 16 15 14 18 18 C 1.40518 * 119.76988 * 359.95574 * 17 16 15 19 19 C 1.40551 * 121.27426 * 180.02562 * 18 17 16 20 20 C 1.36102 * 119.64979 * 179.97438 * 19 18 17 21 21 C 1.39360 * 120.98068 * 0.02562 * 20 19 18 22 22 C 1.36133 * 120.97360 * 359.97351 * 21 20 19 23 23 C 1.40418 * 119.66556 * 0.02562 * 22 21 20 24 24 C 1.47962 * 110.99752 * 70.64696 * 10 9 7 25 25 H 0.96991 * 120.00378 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46704 * 60.00428 * 9 7 2 27 27 H 1.08999 * 109.47663 * 300.00300 * 9 7 2 28 28 H 1.09003 * 113.76124 * 108.10362 * 11 10 9 29 29 H 1.08998 * 113.76275 * 336.73280 * 11 10 9 30 30 H 1.08997 * 113.73251 * 269.26094 * 12 11 10 31 31 H 1.07994 * 119.54169 * 0.02562 * 15 14 13 32 32 H 1.08009 * 119.46762 * 180.02562 * 16 15 14 33 33 H 1.08000 * 120.11205 * 180.23313 * 17 16 15 34 34 H 1.08003 * 120.17637 * 359.95828 * 19 18 17 35 35 H 1.08002 * 119.51371 * 179.97438 * 20 19 18 36 36 H 1.08003 * 119.51265 * 179.97438 * 21 20 19 37 37 H 1.07999 * 120.16541 * 180.02562 * 22 21 20 38 38 H 1.08998 * 113.76203 * 23.26301 * 24 10 9 39 39 H 1.09001 * 113.75381 * 251.89183 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5790 0.0001 11 6 5.4605 -2.6254 -0.2403 12 6 5.1651 -3.8138 -1.1731 13 8 5.9110 -3.7878 -2.3916 14 6 6.0709 -4.9693 -3.0420 15 6 5.4283 -6.0911 -2.5986 16 6 5.5814 -7.3092 -3.2545 17 6 6.3758 -7.4197 -4.3550 18 6 7.0540 -6.2897 -4.8422 19 6 7.8814 -6.3676 -5.9757 20 6 8.5224 -5.2520 -6.4195 21 6 8.3717 -4.0304 -5.7660 22 6 7.5785 -3.9177 -4.6654 23 6 6.9012 -5.0472 -4.1783 24 6 3.7459 -3.2317 -1.3030 25 1 -0.4850 0.8399 0.0004 26 1 3.8752 -0.6796 0.8895 27 1 3.8746 -0.6807 -0.8904 28 1 6.0425 -2.8935 0.6415 29 1 5.8487 -1.7477 -0.7569 30 1 5.1998 -4.7823 -0.6742 31 1 4.7924 -6.0314 -1.7278 32 1 5.0623 -8.1810 -2.8842 33 1 6.4805 -8.3717 -4.8543 34 1 8.0081 -7.3079 -6.4917 35 1 9.1580 -5.3146 -7.2904 36 1 8.8918 -3.1601 -6.1384 37 1 7.4707 -2.9644 -4.1694 38 1 3.6326 -2.5313 -2.1304 39 1 2.9580 -3.9842 -1.2702 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225268982.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:21 Heat of formation + Delta-G solvation = 49.366193 kcal Electronic energy + Delta-G solvation = -21088.301102 eV Core-core repulsion = 17962.364829 eV Total energy + Delta-G solvation = -3125.936273 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.89521 -39.61036 -37.57197 -35.96249 -32.87165 -32.08725 -30.51959 -29.74931 -28.71937 -25.94465 -25.46596 -23.49343 -23.21468 -22.08131 -20.96716 -19.59216 -18.22660 -17.45075 -16.94239 -16.79693 -15.85607 -15.50819 -15.20367 -14.72426 -14.36550 -14.20434 -13.86044 -13.76914 -13.43013 -13.03804 -12.78807 -12.59369 -12.29890 -12.13374 -12.10487 -11.85122 -11.32698 -11.13801 -11.07277 -10.81491 -10.76773 -10.37357 -9.97953 -9.83675 -9.45554 -9.35072 -8.76561 -8.66412 -8.13933 -7.60860 -6.11542 -4.10580 0.52862 0.88466 1.99841 2.92207 3.13653 3.24334 3.32338 3.33742 4.02292 4.36385 4.47539 4.56124 4.66881 4.74322 4.77357 4.89442 4.99017 5.09845 5.13948 5.20370 5.28723 5.34277 5.47420 5.61161 5.79827 5.85799 5.90945 5.97271 5.99074 6.13624 6.19434 6.22809 6.32934 6.37059 6.45611 6.48484 6.63720 6.71094 6.85376 7.18046 7.46328 7.64548 7.69373 8.51889 8.95322 9.48979 11.01516 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.025433 B = 0.003568 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.654819 B = 7846.049954 C = 8373.987806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.876 3.124 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.515 4.515 8 H 0.079 0.921 9 C 0.132 3.868 10 N -0.462 5.462 11 C 0.004 3.996 12 C 0.042 3.958 13 O -0.300 6.300 14 C 0.158 3.842 15 C -0.228 4.228 16 C -0.067 4.067 17 C -0.159 4.159 18 C -0.018 4.018 19 C -0.121 4.121 20 C -0.105 4.105 21 C -0.137 4.137 22 C -0.077 4.077 23 C -0.075 4.075 24 C 0.010 3.990 25 H 0.265 0.735 26 H 0.034 0.966 27 H -0.006 1.006 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.133 0.867 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.132 0.868 38 H 0.079 0.921 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.288 -12.894 -10.496 23.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.553 4.553 8 H 0.098 0.902 9 C 0.005 3.995 10 N -0.186 5.186 11 C -0.124 4.124 12 C -0.014 4.014 13 O -0.212 6.212 14 C 0.112 3.888 15 C -0.247 4.247 16 C -0.085 4.085 17 C -0.177 4.177 18 C -0.018 4.018 19 C -0.139 4.139 20 C -0.123 4.123 21 C -0.155 4.155 22 C -0.095 4.095 23 C -0.076 4.076 24 C -0.119 4.119 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.012 0.988 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.124 0.876 31 H 0.151 0.849 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.150 0.850 38 H 0.098 0.902 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 16.904 -12.811 -9.926 23.418 hybrid contribution 0.404 1.310 -0.562 1.481 sum 17.308 -11.502 -10.488 23.277 Atomic orbital electron populations 1.69888 1.06150 1.26997 1.50572 1.24907 0.94770 0.98937 0.94590 0.86845 0.80375 0.83896 0.78575 1.20220 1.20988 1.19110 1.20931 0.88418 0.94906 1.51070 0.90245 1.20687 0.97817 0.85189 0.95834 1.68522 1.02752 1.19094 1.28265 1.24225 0.94578 0.96378 0.97266 1.24999 0.92694 1.00604 0.83108 1.86132 1.70169 1.28251 1.36693 1.18749 0.93107 0.85536 0.91437 1.20959 1.06081 0.93152 1.04486 1.20591 0.96535 0.96859 0.94523 1.20826 1.00466 0.97680 0.98704 1.17889 0.96687 0.92266 0.94928 1.20943 0.97778 0.98954 0.96228 1.20876 0.99023 0.92854 0.99528 1.20816 1.00242 0.97867 0.96611 1.21035 0.94817 0.97926 0.95726 1.17509 0.99883 0.94435 0.95731 1.24254 0.94757 0.99098 0.93766 0.92534 0.94778 0.98804 0.89044 0.90786 0.87607 0.84894 0.85833 0.85713 0.85539 0.86096 0.85990 0.85033 0.90236 0.89348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.52 -14.66 9.40 -34.44 -0.32 -14.98 16 8 H 0.08 2.46 8.04 -52.49 -0.42 2.04 16 9 C 0.13 3.18 3.65 -4.98 -0.02 3.16 16 10 N -0.46 -9.55 6.25 -239.94 -1.50 -11.05 16 11 C 0.00 0.07 7.81 -2.76 -0.02 0.05 16 12 C 0.04 0.65 3.81 -25.79 -0.10 0.55 16 13 O -0.30 -4.64 9.38 -19.14 -0.18 -4.82 16 14 C 0.16 2.27 6.66 -39.12 -0.26 2.01 16 15 C -0.23 -2.94 8.96 -39.79 -0.36 -3.30 16 16 C -0.07 -0.74 9.94 -39.97 -0.40 -1.14 16 17 C -0.16 -1.71 9.77 -39.47 -0.39 -2.09 16 18 C -0.02 -0.21 5.74 -106.85 -0.61 -0.83 16 19 C -0.12 -1.20 9.77 -39.48 -0.39 -1.59 16 20 C -0.10 -0.99 9.95 -39.93 -0.40 -1.38 16 21 C -0.14 -1.43 9.95 -39.92 -0.40 -1.82 16 22 C -0.08 -0.97 9.56 -39.52 -0.38 -1.34 16 23 C -0.08 -1.03 5.75 -106.73 -0.61 -1.64 16 24 C 0.01 0.19 7.29 -2.76 -0.02 0.17 16 25 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 26 H 0.03 0.83 7.20 -51.93 -0.37 0.46 16 27 H -0.01 -0.14 7.12 -51.93 -0.37 -0.51 16 28 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.07 1.22 7.79 -51.93 -0.40 0.82 16 30 H 0.11 1.45 6.05 -51.93 -0.31 1.13 16 31 H 0.13 1.62 5.87 -52.49 -0.31 1.31 16 32 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 35 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 37 H 0.13 1.62 7.62 -52.49 -0.40 1.22 16 38 H 0.08 1.59 7.78 -51.93 -0.40 1.19 16 39 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 323.64 15.07 4.88 4.88 Total: -1.00 -31.53 323.64 -10.59 -42.12 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -5.12 Total: 1.07 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -4.76 Total: -22.24 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: -0.73 Total: -37.74 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.18 Total: -4.82 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.53 -10.59 -42.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225268982.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.482 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds