Wall clock time and date at job start Tue Mar 31 2020 06:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 119.99836 * 2 1 4 4 H 1.48503 * 109.47276 * 270.00060 * 3 2 1 5 5 H 1.48506 * 109.47217 * 29.99888 * 3 2 1 6 6 H 1.48497 * 109.47454 * 149.99914 * 3 2 1 7 7 C 1.37874 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00107 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00074 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47040 * 180.02562 * 9 7 2 11 11 C 1.47965 * 110.99653 * 170.00384 * 10 9 7 12 12 C 1.53937 * 86.18122 * 222.41929 * 11 10 9 13 13 O 1.42896 * 113.73698 * 138.07651 * 12 11 10 14 14 C 1.35808 * 117.00060 * 158.04143 * 13 12 11 15 15 C 1.36674 * 120.22378 * 6.11409 * 14 13 12 16 16 C 1.39192 * 120.91375 * 179.97438 * 15 14 13 17 17 C 1.36174 * 121.06364 * 0.06672 * 16 15 14 18 18 C 1.40518 * 119.76988 * 359.95574 * 17 16 15 19 19 C 1.40551 * 121.27426 * 180.02562 * 18 17 16 20 20 C 1.36102 * 119.64979 * 179.97438 * 19 18 17 21 21 C 1.39360 * 120.98068 * 0.02562 * 20 19 18 22 22 C 1.36133 * 120.97360 * 359.97351 * 21 20 19 23 23 C 1.40418 * 119.66556 * 0.02562 * 22 21 20 24 24 C 1.47962 * 110.99752 * 70.64696 * 10 9 7 25 25 H 0.96991 * 120.00378 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46704 * 60.00428 * 9 7 2 27 27 H 1.08999 * 109.47663 * 300.00300 * 9 7 2 28 28 H 1.09003 * 113.76124 * 108.10362 * 11 10 9 29 29 H 1.08998 * 113.76275 * 336.73280 * 11 10 9 30 30 H 1.08997 * 113.73251 * 269.26094 * 12 11 10 31 31 H 1.07994 * 119.54169 * 0.02562 * 15 14 13 32 32 H 1.08009 * 119.46762 * 180.02562 * 16 15 14 33 33 H 1.08000 * 120.11205 * 180.23313 * 17 16 15 34 34 H 1.08003 * 120.17637 * 359.95828 * 19 18 17 35 35 H 1.08002 * 119.51371 * 179.97438 * 20 19 18 36 36 H 1.08003 * 119.51265 * 179.97438 * 21 20 19 37 37 H 1.07999 * 120.16541 * 180.02562 * 22 21 20 38 38 H 1.08998 * 113.76203 * 23.26301 * 24 10 9 39 39 H 1.09001 * 113.75381 * 251.89183 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5790 0.0001 11 6 5.4605 -2.6254 -0.2403 12 6 5.1651 -3.8138 -1.1731 13 8 5.9110 -3.7878 -2.3916 14 6 6.0709 -4.9693 -3.0420 15 6 5.4283 -6.0911 -2.5986 16 6 5.5814 -7.3092 -3.2545 17 6 6.3758 -7.4197 -4.3550 18 6 7.0540 -6.2897 -4.8422 19 6 7.8814 -6.3676 -5.9757 20 6 8.5224 -5.2520 -6.4195 21 6 8.3717 -4.0304 -5.7660 22 6 7.5785 -3.9177 -4.6654 23 6 6.9012 -5.0472 -4.1783 24 6 3.7459 -3.2317 -1.3030 25 1 -0.4850 0.8399 0.0004 26 1 3.8752 -0.6796 0.8895 27 1 3.8746 -0.6807 -0.8904 28 1 6.0425 -2.8935 0.6415 29 1 5.8487 -1.7477 -0.7569 30 1 5.1998 -4.7823 -0.6742 31 1 4.7924 -6.0314 -1.7278 32 1 5.0623 -8.1810 -2.8842 33 1 6.4805 -8.3717 -4.8543 34 1 8.0081 -7.3079 -6.4917 35 1 9.1580 -5.3146 -7.2904 36 1 8.8918 -3.1601 -6.1384 37 1 7.4707 -2.9644 -4.1694 38 1 3.6326 -2.5313 -2.1304 39 1 2.9580 -3.9842 -1.2702 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225268982.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:21 Heat of formation + Delta-G solvation = 29.228832 kcal Electronic energy + Delta-G solvation = -21089.174324 eV Core-core repulsion = 17962.364829 eV Total energy + Delta-G solvation = -3126.809495 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.93392 -40.81176 -38.74885 -36.86009 -34.98437 -33.04932 -31.70104 -31.21101 -29.63142 -27.56171 -27.00330 -24.53936 -24.13618 -23.29576 -22.35011 -20.97730 -19.28889 -19.05295 -18.34856 -17.78881 -16.92605 -16.78564 -16.51410 -16.17670 -15.80100 -15.23122 -15.05803 -14.78390 -14.69702 -14.40971 -14.05657 -13.92260 -13.81266 -13.69779 -13.12606 -12.93493 -12.75683 -12.68000 -12.20865 -11.94103 -11.84506 -11.82328 -11.58176 -11.52222 -11.39783 -10.86021 -10.42192 -9.79986 -9.62084 -8.51480 -8.34653 -6.40020 -0.33455 0.02541 1.11547 1.31474 1.33185 1.44254 2.00439 2.09628 2.29720 2.97520 3.06412 3.13621 3.34396 3.70831 3.79697 3.87131 3.92714 4.11862 4.14095 4.28084 4.36112 4.38065 4.48573 4.55394 4.56028 4.61423 4.67490 4.72114 4.76250 4.90699 5.01929 5.15207 5.16487 5.31074 5.32733 5.48938 5.59979 5.63456 5.64260 5.78584 5.86896 6.05793 6.38012 6.42052 6.65437 7.23954 8.82027 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.025433 B = 0.003568 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.654819 B = 7846.049954 C = 8373.987806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.009 3.991 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.247 1.247 7 C -0.525 4.525 8 H 0.035 0.965 9 C 0.142 3.858 10 N -0.482 5.482 11 C 0.008 3.992 12 C 0.067 3.933 13 O -0.312 6.312 14 C 0.124 3.876 15 C -0.231 4.231 16 C -0.081 4.081 17 C -0.148 4.148 18 C -0.039 4.039 19 C -0.118 4.118 20 C -0.108 4.108 21 C -0.130 4.130 22 C -0.109 4.109 23 C -0.095 4.095 24 C 0.002 3.998 25 H 0.269 0.731 26 H 0.037 0.963 27 H -0.003 1.003 28 H 0.119 0.881 29 H 0.075 0.925 30 H 0.126 0.874 31 H 0.134 0.866 32 H 0.149 0.851 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.143 0.857 37 H 0.121 0.879 38 H 0.059 0.941 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.128 -13.771 -11.828 27.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.189 4.189 3 Si 0.772 3.228 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.170 1.170 7 C -0.563 4.563 8 H 0.054 0.946 9 C 0.014 3.986 10 N -0.206 5.206 11 C -0.120 4.120 12 C 0.010 3.990 13 O -0.225 6.225 14 C 0.078 3.922 15 C -0.250 4.250 16 C -0.099 4.099 17 C -0.166 4.166 18 C -0.039 4.039 19 C -0.136 4.136 20 C -0.126 4.126 21 C -0.148 4.148 22 C -0.127 4.127 23 C -0.096 4.096 24 C -0.127 4.127 25 H 0.078 0.922 26 H 0.055 0.945 27 H 0.015 0.985 28 H 0.137 0.863 29 H 0.094 0.906 30 H 0.143 0.857 31 H 0.152 0.848 32 H 0.167 0.833 33 H 0.174 0.826 34 H 0.176 0.824 35 H 0.172 0.828 36 H 0.161 0.839 37 H 0.139 0.861 38 H 0.077 0.923 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 19.765 -13.714 -11.262 26.563 hybrid contribution -0.468 1.417 -0.271 1.516 sum 19.297 -12.297 -11.533 25.624 Atomic orbital electron populations 1.70043 1.08163 1.28333 1.52017 1.25886 0.95670 1.03295 0.94006 0.85689 0.79559 0.78388 0.79201 1.19274 1.20327 1.17047 1.21169 0.90902 0.93418 1.50823 0.94632 1.20455 0.94837 0.87522 0.95799 1.68414 1.05762 1.16938 1.29453 1.24305 0.92054 0.96960 0.98713 1.24649 0.90013 1.00982 0.83324 1.86090 1.70255 1.29428 1.36693 1.19005 0.95078 0.85489 0.92603 1.21150 1.05569 0.93656 1.04589 1.20898 0.97213 0.96946 0.94870 1.21242 0.98793 0.98504 0.98026 1.18265 0.97719 0.92059 0.95898 1.21351 0.96471 1.00524 0.95241 1.21281 0.99007 0.92078 1.00217 1.21163 0.98872 0.99339 0.95424 1.21086 0.96738 0.97531 0.97335 1.17796 1.00218 0.95669 0.95900 1.24231 0.97310 0.98772 0.92353 0.92237 0.94523 0.98516 0.86318 0.90644 0.85657 0.84829 0.83301 0.82561 0.82441 0.82807 0.83911 0.86126 0.92253 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.70 13.96 21.45 0.30 -59.40 16 2 C 0.01 0.55 5.47 84.65 0.46 1.01 16 3 Si 0.95 44.30 27.47 68.60 1.88 46.18 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 7 C -0.52 -30.96 9.40 25.60 0.24 -30.72 16 8 H 0.04 2.34 8.04 -2.91 -0.02 2.31 16 9 C 0.14 6.89 3.65 85.56 0.31 7.20 16 10 N -0.48 -20.13 6.25 -916.24 -5.73 -25.86 16 11 C 0.01 0.26 7.81 86.41 0.67 0.93 16 12 C 0.07 2.06 3.81 31.24 0.12 2.18 16 13 O -0.31 -9.84 9.38 -91.40 -0.86 -10.69 16 14 C 0.12 3.60 6.66 22.57 0.15 3.75 16 15 C -0.23 -5.88 8.96 22.13 0.20 -5.68 16 16 C -0.08 -1.67 9.94 22.02 0.22 -1.45 16 17 C -0.15 -2.81 9.77 22.34 0.22 -2.59 16 18 C -0.04 -0.88 5.74 -21.30 -0.12 -1.00 16 19 C -0.12 -1.97 9.77 22.34 0.22 -1.76 16 20 C -0.11 -1.69 9.95 22.04 0.22 -1.47 16 21 C -0.13 -2.48 9.95 22.05 0.22 -2.26 16 22 C -0.11 -2.73 9.56 22.31 0.21 -2.52 16 23 C -0.10 -2.59 5.75 -21.23 -0.12 -2.71 16 24 C 0.00 0.10 7.29 86.41 0.63 0.73 16 25 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 26 H 0.04 1.76 7.20 -2.39 -0.02 1.74 16 27 H 0.00 -0.14 7.12 -2.39 -0.02 -0.15 16 28 H 0.12 3.17 8.14 -2.39 -0.02 3.16 16 29 H 0.08 2.43 7.79 -2.39 -0.02 2.41 16 30 H 0.13 3.35 6.05 -2.39 -0.01 3.33 16 31 H 0.13 3.23 5.87 -2.91 -0.02 3.22 16 32 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 33 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 34 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 35 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 36 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 37 H 0.12 3.13 7.62 -2.91 -0.02 3.11 16 38 H 0.06 2.51 7.78 -2.39 -0.02 2.50 16 39 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -71.17 323.64 0.44 -70.73 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.99 Total: 15.41 kcal Atomic # 6 Polarization: -40.21 SS G_CDS: 3.85 Total: -36.36 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -5.43 Total: -85.27 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -0.86 Total: -10.69 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.18 kcal Total: -71.17 0.44 -70.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225268982.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.959 kcal (2) G-P(sol) polarization free energy of solvation -71.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds