Wall clock time and date at job start Tue Mar 31 2020 05:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35961 * 117.00087 * 2 1 4 4 C 1.38873 * 120.04746 * 84.35924 * 3 2 1 5 5 F 1.35098 * 120.06037 * 359.70267 * 4 3 2 6 6 C 1.38505 * 119.88201 * 179.97438 * 4 3 2 7 7 F 1.35096 * 120.00514 * 179.97438 * 6 4 3 8 8 C 1.38495 * 119.98770 * 359.97438 * 6 4 3 9 9 C 1.38211 * 120.09829 * 359.97438 * 8 6 4 10 10 C 1.38216 * 120.11267 * 0.02562 * 9 8 6 11 11 C 1.50706 * 119.99306 * 180.02562 * 10 9 8 12 12 N 1.46897 * 109.46846 * 103.96261 * 11 10 9 13 13 C 1.47475 * 111.00401 * 268.82083 * 12 11 10 14 14 C 1.53506 * 87.93516 * 221.29611 * 13 12 11 15 15 C 1.50702 * 114.34638 * 139.68130 * 14 13 12 16 16 H 1.07998 * 120.00241 * 266.08123 * 15 14 13 17 17 C 1.37881 * 119.99708 * 86.07637 * 15 14 13 18 18 N 1.31511 * 119.99481 * 180.02562 * 17 15 14 19 19 Si 1.86792 * 120.00027 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47410 * 89.99673 * 19 17 15 21 21 H 1.48508 * 109.47094 * 209.99920 * 19 17 15 22 22 H 1.48503 * 109.47493 * 329.99452 * 19 17 15 23 23 C 1.47476 * 110.99814 * 172.84908 * 12 11 10 24 24 H 1.08999 * 109.47063 * 174.95014 * 1 2 3 25 25 H 1.08999 * 109.47526 * 294.95063 * 1 2 3 26 26 H 1.09001 * 109.47310 * 54.95300 * 1 2 3 27 27 H 1.07992 * 119.95158 * 179.97438 * 8 6 4 28 28 H 1.07999 * 119.94445 * 179.97438 * 9 8 6 29 29 H 1.08995 * 109.47072 * 223.96820 * 11 10 9 30 30 H 1.09003 * 109.46777 * 343.96619 * 11 10 9 31 31 H 1.08999 * 113.47459 * 336.06784 * 13 12 11 32 32 H 1.09003 * 113.47602 * 106.53299 * 13 12 11 33 33 H 1.08999 * 114.17551 * 272.37925 * 14 13 12 34 34 H 0.97001 * 119.99802 * 180.02562 * 18 17 15 35 35 H 1.09006 * 113.47791 * 253.47062 * 23 12 11 36 36 H 1.08995 * 113.48083 * 23.88049 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 2.2566 1.8846 1.1963 5 9 1.8430 1.3397 2.3613 6 6 2.8862 3.1183 1.1923 7 9 3.0917 3.7756 2.3546 8 6 3.3051 3.6779 -0.0033 9 6 3.0963 3.0068 -1.1934 10 6 2.4684 1.7755 -1.1942 11 6 2.2426 1.0459 -2.4934 12 7 3.2142 -0.0491 -2.6152 13 6 4.4323 0.4003 -3.3147 14 6 4.4268 -0.9376 -4.0672 15 6 4.7894 -0.8313 -5.5261 16 1 4.0126 -0.7321 -6.2698 17 6 6.1130 -0.8606 -5.9114 18 7 6.4293 -0.7674 -7.1845 19 14 7.4565 -1.0328 -4.6252 20 1 7.7473 -2.4719 -4.4025 21 1 8.6857 -0.3468 -5.0985 22 1 7.0049 -0.4163 -3.3519 23 6 2.9177 -0.8905 -3.7896 24 1 -0.3633 -1.0237 -0.0905 25 1 -0.3634 0.4335 0.9317 26 1 -0.3634 0.5901 -0.8413 27 1 3.7956 4.6399 -0.0057 28 1 3.4236 3.4456 -2.1243 29 1 1.2318 0.6384 -2.5103 30 1 2.3693 1.7383 -3.3257 31 1 4.2686 1.2627 -3.9609 32 1 5.2912 0.5239 -2.6550 33 1 4.9507 -1.7422 -3.5511 34 1 7.3605 -0.7883 -7.4556 35 1 2.4930 -1.8610 -3.5324 36 1 2.3491 -0.3730 -4.5621 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238472682.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:37 Heat of formation + Delta-G solvation = -58.831958 kcal Electronic energy + Delta-G solvation = -22216.107429 eV Core-core repulsion = 18531.249803 eV Total energy + Delta-G solvation = -3684.857627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.57261 -48.64706 -40.24851 -38.87281 -37.34866 -33.00401 -31.93447 -30.44260 -28.86461 -27.15821 -25.70651 -25.05793 -23.03113 -22.93194 -21.21192 -18.70871 -18.47800 -17.80147 -17.36808 -16.97756 -16.62779 -16.07824 -15.46933 -15.13442 -15.09376 -14.88375 -14.66044 -14.50816 -14.25053 -13.76490 -13.31291 -13.22115 -12.61586 -12.38634 -12.29349 -11.97889 -11.83027 -11.62416 -11.19250 -11.06536 -10.40523 -10.23996 -9.98456 -9.96487 -9.64978 -9.16149 -8.93254 -8.72261 -8.57678 -8.18202 -6.13603 -4.14285 0.71368 0.73810 2.99622 3.28608 3.33744 3.37288 3.42517 3.82242 4.19596 4.40067 4.44577 4.49762 4.75701 4.99295 5.08688 5.10790 5.13086 5.21387 5.31936 5.45154 5.55878 5.65572 5.79464 5.84278 5.86471 6.07902 6.13831 6.28538 6.37523 6.40669 6.49390 6.72892 6.93285 7.26042 7.32596 7.64906 7.80233 8.45306 8.89232 9.49663 10.98788 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.022828 B = 0.004541 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.285363 B = 6164.199063 C = 6741.573509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.308 6.308 3 C 0.112 3.888 4 C 0.039 3.961 5 F -0.125 7.125 6 C 0.071 3.929 7 F -0.130 7.130 8 C -0.131 4.131 9 C -0.081 4.081 10 C -0.063 4.063 11 C 0.062 3.938 12 N -0.470 5.470 13 C -0.013 4.013 14 C 0.001 3.999 15 C -0.511 4.511 16 H 0.074 0.926 17 C 0.075 3.925 18 N -0.899 5.899 19 Si 0.875 3.125 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.257 1.257 23 C 0.011 3.989 24 H 0.099 0.901 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.148 0.852 28 H 0.146 0.854 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.264 0.736 35 H 0.068 0.932 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.671 8.094 14.209 19.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.224 6.224 3 C 0.066 3.934 4 C 0.018 3.982 5 F -0.104 7.104 6 C 0.050 3.950 7 F -0.108 7.108 8 C -0.150 4.150 9 C -0.100 4.100 10 C -0.064 4.064 11 C -0.066 4.066 12 N -0.192 5.192 13 C -0.142 4.142 14 C -0.019 4.019 15 C -0.549 4.549 16 H 0.092 0.908 17 C -0.128 4.128 18 N -0.536 5.536 19 Si 0.702 3.298 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.181 1.181 23 C -0.118 4.118 24 H 0.118 0.882 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.166 0.834 28 H 0.164 0.836 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.452 7.642 14.846 19.699 hybrid contribution 0.525 0.608 0.358 0.879 sum -9.927 8.250 15.204 19.944 Atomic orbital electron populations 1.23057 0.78706 1.03826 1.00524 1.86203 1.19713 1.22665 1.93847 1.18214 0.98601 0.86768 0.89768 1.18105 1.04353 0.93077 0.82616 1.91500 1.88251 1.85282 1.45337 1.17494 1.03506 0.91053 0.82919 1.91518 1.93143 1.79937 1.46225 1.21073 1.01871 1.01859 0.90174 1.20994 0.96885 0.93794 0.98329 1.20182 0.97631 0.93711 0.94860 1.21514 0.98636 0.94520 0.91955 1.68980 1.03811 1.12364 1.34001 1.24475 0.92728 1.01189 0.95773 1.20494 0.91987 0.92932 0.96458 1.20907 0.93333 1.50781 0.89900 0.90793 1.25002 0.98758 0.93966 0.95048 1.69908 1.18434 1.49974 1.15284 0.86890 0.81343 0.78789 0.82817 1.20260 1.21521 1.18102 1.23795 1.00173 0.97272 0.90524 0.88232 0.93625 0.93259 0.83436 0.83644 0.90360 0.92418 0.91684 0.91837 0.92551 0.92576 0.91372 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.31 -4.52 9.59 -19.62 -0.19 -4.70 16 3 C 0.11 1.61 5.70 -39.19 -0.22 1.39 16 4 C 0.04 0.55 7.32 -39.25 -0.29 0.27 16 5 F -0.13 -1.85 17.03 2.25 0.04 -1.81 16 6 C 0.07 0.90 7.30 -39.39 -0.29 0.62 16 7 F -0.13 -1.69 17.18 2.25 0.04 -1.65 16 8 C -0.13 -1.41 10.02 -39.50 -0.40 -1.81 16 9 C -0.08 -0.94 9.66 -39.60 -0.38 -1.32 16 10 C -0.06 -0.86 5.46 -104.47 -0.57 -1.43 16 11 C 0.06 0.91 4.52 -4.97 -0.02 0.89 16 12 N -0.47 -8.58 6.32 -246.13 -1.55 -10.13 16 13 C -0.01 -0.26 6.68 -7.56 -0.05 -0.31 16 14 C 0.00 0.02 2.95 -91.24 -0.27 -0.25 16 15 C -0.51 -13.70 9.38 -34.44 -0.32 -14.03 16 16 H 0.07 2.14 8.06 -52.49 -0.42 1.72 16 17 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 18 N -0.90 -26.63 13.96 55.43 0.77 -25.86 16 19 Si 0.87 20.95 27.14 -169.99 -4.61 16.34 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 H -0.26 -5.87 5.68 56.52 0.32 -5.55 16 23 C 0.01 0.21 7.26 -7.56 -0.05 0.15 16 24 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.45 7.81 -51.93 -0.41 0.04 16 27 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 28 H 0.15 1.42 8.01 -52.49 -0.42 1.00 16 29 H 0.08 1.06 7.48 -51.93 -0.39 0.67 16 30 H 0.06 0.80 7.17 -51.93 -0.37 0.43 16 31 H 0.06 1.29 7.41 -51.93 -0.38 0.91 16 32 H 0.06 1.32 7.11 -51.93 -0.37 0.95 16 33 H 0.06 1.32 7.04 -51.93 -0.37 0.96 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.15 7.87 -51.93 -0.41 0.74 16 LS Contribution 312.58 15.07 4.71 4.71 Total: -1.00 -30.25 312.58 -7.09 -37.34 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -4.44 Total: -1.83 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -1.85 Total: -12.40 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.78 Total: -35.99 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -0.19 Total: -4.70 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.08 Total: -3.47 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.61 Total: 16.34 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.25 -7.09 -37.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238472682.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.491 kcal (2) G-P(sol) polarization free energy of solvation -30.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds