Wall clock time and date at job start Tue Mar 31 2020 06:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86802 * 119.99821 * 2 1 4 4 H 1.48498 * 109.47190 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46861 * 300.00109 * 3 2 1 6 6 H 1.48496 * 109.46999 * 59.99541 * 3 2 1 7 7 C 1.38644 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00010 * 179.97438 * 7 2 1 9 9 O 1.34815 * 120.00115 * 359.97438 * 7 2 1 10 10 C 1.35667 * 117.00169 * 185.06522 * 9 7 2 11 11 C 1.38758 * 120.13089 * 354.39929 * 10 9 7 12 12 C 1.38115 * 120.04478 * 180.02562 * 11 10 9 13 13 C 1.38447 * 120.32738 * 0.02562 * 12 11 10 14 14 C 1.38018 * 120.26823 * 0.02562 * 13 12 11 15 15 C 1.39291 * 119.94467 * 359.97438 * 14 13 12 16 16 C 1.48278 * 120.15738 * 179.97438 * 15 14 13 17 17 C 1.39413 * 120.12454 * 65.00297 * 16 15 14 18 18 C 1.37989 * 119.87379 * 179.97438 * 17 16 15 19 19 C 1.38353 * 120.12555 * 0.02562 * 18 17 16 20 20 C 1.38316 * 120.25187 * 359.97438 * 19 18 17 21 21 C 1.38028 * 120.12714 * 359.72614 * 20 19 18 22 22 C 1.50702 * 120.06016 * 180.27440 * 21 20 19 23 23 C 1.53001 * 109.47172 * 265.27345 * 22 21 20 24 24 N 1.46899 * 109.47274 * 180.02562 * 23 22 21 25 25 H 0.96992 * 120.00236 * 0.02562 * 1 2 3 26 26 H 1.07993 * 119.97886 * 0.02562 * 11 10 9 27 27 H 1.08000 * 119.83823 * 180.28301 * 12 11 10 28 28 H 1.07996 * 119.86443 * 179.97438 * 13 12 11 29 29 H 1.07997 * 120.02508 * 180.02562 * 14 13 12 30 30 H 1.08000 * 120.06629 * 359.97311 * 17 16 15 31 31 H 1.07995 * 119.94101 * 179.97438 * 18 17 16 32 32 H 1.07991 * 119.87414 * 179.97438 * 19 18 17 33 33 H 1.08010 * 119.93376 * 180.02562 * 20 19 18 34 34 H 1.08997 * 109.47640 * 25.27934 * 22 21 20 35 35 H 1.09001 * 109.46446 * 145.28164 * 22 21 20 36 36 H 1.08997 * 109.47319 * 300.00785 * 23 22 21 37 37 H 1.09009 * 109.46918 * 60.00726 * 23 22 21 38 38 H 1.00904 * 110.99624 * 56.04717 * 24 23 22 39 39 H 1.00892 * 111.00111 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3465 0.0006 5 1 1.8907 2.3964 -1.2125 6 1 1.8907 2.3965 1.2124 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2006 -0.0010 9 8 1.3348 -2.3682 -0.0005 10 6 2.0697 -3.5037 0.1056 11 6 3.4557 -3.4402 0.0911 12 6 4.2021 -4.5973 0.1988 13 6 3.5744 -5.8253 0.3211 14 6 2.1966 -5.9038 0.3360 15 6 1.4328 -4.7440 0.2281 16 6 -0.0478 -4.8230 0.2430 17 6 -0.7136 -5.2620 1.3865 18 6 -2.0916 -5.3330 1.3948 19 6 -2.8124 -4.9700 0.2710 20 6 -2.1572 -4.5336 -0.8662 21 6 -0.7794 -4.4527 -0.8839 22 6 -0.0673 -3.9712 -2.1218 23 6 0.3514 -5.1740 -2.9697 24 7 1.0461 -4.7046 -4.1760 25 1 -0.4850 0.8400 -0.0004 26 1 3.9512 -2.4854 -0.0044 27 1 5.2808 -4.5436 0.1917 28 1 4.1654 -6.7253 0.4044 29 1 1.7111 -6.8637 0.4320 30 1 -0.1519 -5.5461 2.2641 31 1 -2.6085 -5.6734 2.2798 32 1 -3.8907 -5.0275 0.2819 33 1 -2.7250 -4.2511 -1.7405 34 1 -0.7355 -3.3336 -2.7006 35 1 0.8177 -3.4037 -1.8341 36 1 1.0196 -5.8116 -2.3909 37 1 -0.5337 -5.7415 -3.2573 38 1 1.8340 -4.1219 -3.9358 39 1 1.3326 -5.4809 -4.7533 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243586748.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:01 Heat of formation + Delta-G solvation = 15.299021 kcal Electronic energy + Delta-G solvation = -22296.196938 eV Core-core repulsion = 19168.783401 eV Total energy + Delta-G solvation = -3127.413537 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.68423 -38.18111 -36.34341 -35.03949 -32.42273 -31.97540 -31.26624 -29.18657 -28.28548 -26.84772 -25.37322 -22.87309 -22.41064 -21.31066 -20.81796 -19.87224 -17.98711 -17.13687 -16.06456 -15.53317 -15.19375 -14.87777 -14.65480 -14.40784 -14.16269 -13.86789 -13.57622 -13.45716 -13.14246 -12.77042 -12.56398 -12.24334 -12.08112 -11.72551 -11.40606 -11.28571 -11.10012 -10.96867 -10.79464 -10.61245 -10.46786 -10.37520 -10.17922 -9.37284 -8.86807 -8.49924 -8.36911 -8.17202 -7.82858 -7.19581 -6.46643 -4.05905 1.74253 1.98733 2.23587 2.33522 3.10524 3.12205 3.17250 3.93372 4.29969 4.52017 4.87072 5.03936 5.18424 5.32962 5.44146 5.49084 5.53528 5.61496 5.68582 5.76932 5.78529 5.96943 6.04219 6.09710 6.12288 6.24481 6.42153 6.56112 6.59961 6.64175 6.75251 6.94925 6.99455 7.03797 7.07293 7.18155 7.28301 7.32007 7.38604 7.43021 7.60152 7.70517 7.76265 7.95936 8.97869 9.66113 10.69563 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012168 B = 0.007271 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.521034 B = 3849.831774 C = 4449.790062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.044 3.956 3 Si 0.937 3.063 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.397 4.397 8 H 0.091 0.909 9 O -0.159 6.159 10 C 0.164 3.836 11 C -0.236 4.236 12 C -0.072 4.072 13 C -0.216 4.216 14 C -0.063 4.063 15 C -0.130 4.130 16 C -0.007 4.007 17 C -0.111 4.111 18 C -0.131 4.131 19 C -0.128 4.128 20 C -0.117 4.117 21 C -0.047 4.047 22 C -0.081 4.081 23 C 0.071 3.929 24 N -0.851 5.851 25 H 0.269 0.731 26 H 0.128 0.872 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.028 0.972 37 H 0.063 0.937 38 H 0.343 0.657 39 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.884 -9.441 -1.533 9.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.161 4.161 3 Si 0.762 3.238 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.473 4.473 8 H 0.109 0.891 9 O -0.062 6.062 10 C 0.109 3.891 11 C -0.256 4.256 12 C -0.090 4.090 13 C -0.235 4.235 14 C -0.081 4.081 15 C -0.131 4.131 16 C -0.008 4.008 17 C -0.129 4.129 18 C -0.149 4.149 19 C -0.146 4.146 20 C -0.135 4.135 21 C -0.047 4.047 22 C -0.119 4.119 23 C -0.059 4.059 24 N -0.380 5.380 25 H 0.079 0.921 26 H 0.146 0.854 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.129 0.871 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.047 0.953 37 H 0.081 0.919 38 H 0.155 0.845 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.258 -8.842 -1.733 9.014 hybrid contribution 1.351 0.418 0.548 1.517 sum 1.093 -8.423 -1.185 8.576 Atomic orbital electron populations 1.70060 1.05821 1.27528 1.45023 1.25245 0.95776 0.98674 0.96426 0.85714 0.79196 0.80651 0.78286 1.19138 1.20102 1.20190 1.21364 0.91784 0.80883 1.53268 0.89127 1.84028 1.33935 1.11096 1.77095 1.19282 0.89909 0.87541 0.92372 1.21126 0.93599 0.99074 1.11753 1.20797 0.98455 0.92392 0.97341 1.20500 0.94127 0.96947 1.11966 1.20676 0.93354 0.95961 0.98102 1.17808 0.91293 0.91127 1.12879 1.18469 0.91762 0.97547 0.92976 1.21129 0.94110 1.00496 0.97203 1.20893 0.94004 1.01936 0.98031 1.20983 0.99086 1.00883 0.93671 1.20902 0.93828 1.00557 0.98221 1.19792 0.93054 0.96847 0.95032 1.20594 1.01997 0.96804 0.92471 1.21718 0.97695 0.96506 0.90030 1.58728 1.33745 1.25037 1.20505 0.92064 0.85430 0.87578 0.87642 0.87141 0.86649 0.86845 0.86898 0.86627 0.91052 0.88893 0.95344 0.91874 0.84473 0.85452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.34 13.67 55.48 0.76 -23.58 16 2 C 0.04 1.19 5.49 -17.52 -0.10 1.09 16 3 Si 0.94 20.24 29.55 -169.99 -5.02 15.22 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.40 -10.68 9.49 30.88 0.29 -10.38 16 8 H 0.09 2.28 5.21 -52.49 -0.27 2.00 16 9 O -0.16 -4.28 7.55 0.35 0.00 -4.27 16 10 C 0.16 3.78 5.32 -38.74 -0.21 3.58 16 11 C -0.24 -4.96 9.16 -39.43 -0.36 -5.32 16 12 C -0.07 -1.27 10.03 -39.55 -0.40 -1.67 16 13 C -0.22 -3.65 10.03 -39.58 -0.40 -4.05 16 14 C -0.06 -1.12 9.73 -39.27 -0.38 -1.50 16 15 C -0.13 -2.67 4.48 -104.73 -0.47 -3.14 16 16 C -0.01 -0.15 4.95 -104.91 -0.52 -0.67 16 17 C -0.11 -2.05 9.74 -39.24 -0.38 -2.43 16 18 C -0.13 -2.15 10.03 -39.63 -0.40 -2.55 16 19 C -0.13 -2.10 10.04 -39.51 -0.40 -2.50 16 20 C -0.12 -2.11 9.67 -39.63 -0.38 -2.49 16 21 C -0.05 -0.93 4.94 -104.28 -0.51 -1.44 16 22 C -0.08 -1.61 5.01 -27.88 -0.14 -1.75 16 23 C 0.07 1.17 6.77 -3.82 -0.03 1.14 16 24 N -0.85 -12.73 9.62 -10.37 -0.10 -12.83 16 25 H 0.27 7.13 8.31 -40.82 -0.34 6.80 16 26 H 0.13 2.69 5.64 -52.49 -0.30 2.39 16 27 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 28 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.12 1.95 8.06 -52.49 -0.42 1.52 16 31 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 33 H 0.12 1.87 8.06 -52.48 -0.42 1.45 16 34 H 0.07 1.45 8.05 -51.93 -0.42 1.03 16 35 H 0.09 2.12 4.68 -51.93 -0.24 1.87 16 36 H 0.03 0.48 7.96 -51.93 -0.41 0.07 16 37 H 0.06 0.98 8.14 -51.92 -0.42 0.55 16 38 H 0.34 5.25 8.99 -39.29 -0.35 4.89 16 39 H 0.33 4.07 9.08 -39.30 -0.36 3.72 16 LS Contribution 329.07 15.07 4.96 4.96 Total: -1.00 -29.61 329.07 -9.05 -38.66 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -4.87 Total: 15.94 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: -4.78 Total: -34.09 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.66 Total: -36.42 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: 0.00 Total: -4.27 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.61 -9.05 -38.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586748.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.963 kcal (2) G-P(sol) polarization free energy of solvation -29.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds