Wall clock time and date at job start Tue Mar 31 2020 06:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86802 * 119.99821 * 2 1 4 4 H 1.48498 * 109.47190 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46861 * 300.00109 * 3 2 1 6 6 H 1.48496 * 109.46999 * 59.99541 * 3 2 1 7 7 C 1.38644 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00010 * 179.97438 * 7 2 1 9 9 O 1.34815 * 120.00115 * 359.97438 * 7 2 1 10 10 C 1.35667 * 117.00169 * 185.06522 * 9 7 2 11 11 C 1.38758 * 120.13089 * 354.39929 * 10 9 7 12 12 C 1.38115 * 120.04478 * 180.02562 * 11 10 9 13 13 C 1.38447 * 120.32738 * 0.02562 * 12 11 10 14 14 C 1.38018 * 120.26823 * 0.02562 * 13 12 11 15 15 C 1.39291 * 119.94467 * 359.97438 * 14 13 12 16 16 C 1.48278 * 120.15738 * 179.97438 * 15 14 13 17 17 C 1.39413 * 120.12454 * 65.00297 * 16 15 14 18 18 C 1.37989 * 119.87379 * 179.97438 * 17 16 15 19 19 C 1.38353 * 120.12555 * 0.02562 * 18 17 16 20 20 C 1.38316 * 120.25187 * 359.97438 * 19 18 17 21 21 C 1.38028 * 120.12714 * 359.72614 * 20 19 18 22 22 C 1.50702 * 120.06016 * 180.27440 * 21 20 19 23 23 C 1.53001 * 109.47172 * 265.27345 * 22 21 20 24 24 N 1.46899 * 109.47274 * 180.02562 * 23 22 21 25 25 H 0.96992 * 120.00236 * 0.02562 * 1 2 3 26 26 H 1.07993 * 119.97886 * 0.02562 * 11 10 9 27 27 H 1.08000 * 119.83823 * 180.28301 * 12 11 10 28 28 H 1.07996 * 119.86443 * 179.97438 * 13 12 11 29 29 H 1.07997 * 120.02508 * 180.02562 * 14 13 12 30 30 H 1.08000 * 120.06629 * 359.97311 * 17 16 15 31 31 H 1.07995 * 119.94101 * 179.97438 * 18 17 16 32 32 H 1.07991 * 119.87414 * 179.97438 * 19 18 17 33 33 H 1.08010 * 119.93376 * 180.02562 * 20 19 18 34 34 H 1.08997 * 109.47640 * 25.27934 * 22 21 20 35 35 H 1.09001 * 109.46446 * 145.28164 * 22 21 20 36 36 H 1.08997 * 109.47319 * 300.00785 * 23 22 21 37 37 H 1.09009 * 109.46918 * 60.00726 * 23 22 21 38 38 H 1.00904 * 110.99624 * 56.04717 * 24 23 22 39 39 H 1.00892 * 111.00111 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3465 0.0006 5 1 1.8907 2.3964 -1.2125 6 1 1.8907 2.3965 1.2124 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2006 -0.0010 9 8 1.3348 -2.3682 -0.0005 10 6 2.0697 -3.5037 0.1056 11 6 3.4557 -3.4402 0.0911 12 6 4.2021 -4.5973 0.1988 13 6 3.5744 -5.8253 0.3211 14 6 2.1966 -5.9038 0.3360 15 6 1.4328 -4.7440 0.2281 16 6 -0.0478 -4.8230 0.2430 17 6 -0.7136 -5.2620 1.3865 18 6 -2.0916 -5.3330 1.3948 19 6 -2.8124 -4.9700 0.2710 20 6 -2.1572 -4.5336 -0.8662 21 6 -0.7794 -4.4527 -0.8839 22 6 -0.0673 -3.9712 -2.1218 23 6 0.3514 -5.1740 -2.9697 24 7 1.0461 -4.7046 -4.1760 25 1 -0.4850 0.8400 -0.0004 26 1 3.9512 -2.4854 -0.0044 27 1 5.2808 -4.5436 0.1917 28 1 4.1654 -6.7253 0.4044 29 1 1.7111 -6.8637 0.4320 30 1 -0.1519 -5.5461 2.2641 31 1 -2.6085 -5.6734 2.2798 32 1 -3.8907 -5.0275 0.2819 33 1 -2.7250 -4.2511 -1.7405 34 1 -0.7355 -3.3336 -2.7006 35 1 0.8177 -3.4037 -1.8341 36 1 1.0196 -5.8116 -2.3909 37 1 -0.5337 -5.7415 -3.2573 38 1 1.8340 -4.1219 -3.9358 39 1 1.3326 -5.4809 -4.7533 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243586748.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:00 Heat of formation + Delta-G solvation = -2.113363 kcal Electronic energy + Delta-G solvation = -22296.951995 eV Core-core repulsion = 19168.783401 eV Total energy + Delta-G solvation = -3128.168594 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.23047 -39.69915 -37.97593 -36.39349 -34.27980 -33.47378 -32.65028 -30.72283 -29.78583 -28.26777 -27.27473 -24.32033 -23.82156 -22.89929 -22.28533 -21.31387 -19.76788 -18.80262 -17.50996 -16.92984 -16.66459 -16.37666 -16.31048 -15.98531 -15.59813 -15.29879 -15.18120 -14.95767 -14.60388 -14.38549 -14.05385 -13.60847 -13.55769 -13.44402 -13.03770 -12.76266 -12.57345 -12.51002 -12.33017 -12.12613 -12.08925 -11.80201 -11.70449 -11.09900 -10.77190 -9.92082 -9.67472 -9.57666 -9.30495 -8.81975 -8.42174 -6.08344 0.29052 0.58825 0.72373 0.83160 1.34191 1.41553 1.50508 2.17030 2.83381 2.94984 3.19971 3.51326 3.59149 3.89601 4.03490 4.14198 4.22394 4.24543 4.28508 4.31984 4.40516 4.57924 4.65837 4.68007 4.69823 4.79462 4.98007 5.08584 5.13768 5.15906 5.19918 5.28570 5.42573 5.61287 5.65493 5.69594 5.72433 5.78077 5.90870 6.05274 6.12836 6.22509 6.26175 6.57127 7.02459 7.84461 8.78995 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012168 B = 0.007271 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.521034 B = 3849.831774 C = 4449.790062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.014 4.014 3 Si 1.007 2.993 4 H -0.253 1.253 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.412 4.412 8 H 0.097 0.903 9 O -0.203 6.203 10 C 0.131 3.869 11 C -0.251 4.251 12 C -0.071 4.071 13 C -0.192 4.192 14 C -0.065 4.065 15 C -0.131 4.131 16 C -0.036 4.036 17 C -0.125 4.125 18 C -0.128 4.128 19 C -0.125 4.125 20 C -0.132 4.132 21 C -0.070 4.070 22 C -0.073 4.073 23 C 0.085 3.915 24 N -0.853 5.853 25 H 0.269 0.731 26 H 0.117 0.883 27 H 0.141 0.859 28 H 0.148 0.852 29 H 0.138 0.862 30 H 0.126 0.874 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.127 0.873 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.026 0.974 37 H 0.076 0.924 38 H 0.340 0.660 39 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.833 -11.773 -1.040 11.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.213 4.213 3 Si 0.828 3.172 4 H -0.176 1.176 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.488 4.488 8 H 0.114 0.886 9 O -0.108 6.108 10 C 0.080 3.920 11 C -0.271 4.271 12 C -0.089 4.089 13 C -0.211 4.211 14 C -0.083 4.083 15 C -0.133 4.133 16 C -0.036 4.036 17 C -0.143 4.143 18 C -0.146 4.146 19 C -0.143 4.143 20 C -0.150 4.150 21 C -0.070 4.070 22 C -0.111 4.111 23 C -0.045 4.045 24 N -0.384 5.384 25 H 0.078 0.922 26 H 0.135 0.865 27 H 0.159 0.841 28 H 0.166 0.834 29 H 0.156 0.844 30 H 0.144 0.856 31 H 0.166 0.834 32 H 0.165 0.835 33 H 0.145 0.855 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.094 0.906 38 H 0.152 0.848 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.734 -11.237 -1.248 11.330 hybrid contribution 1.126 0.819 0.415 1.453 sum 1.860 -10.417 -0.832 10.615 Atomic orbital electron populations 1.70205 1.07694 1.28241 1.48385 1.26358 0.96652 1.02179 0.96119 0.84681 0.78406 0.75798 0.78331 1.17642 1.19616 1.19737 1.21766 0.92273 0.81785 1.53018 0.88598 1.84018 1.34928 1.11773 1.80079 1.19789 0.90967 0.87608 0.93635 1.21263 0.93185 1.00142 1.12468 1.21178 1.00137 0.91523 0.96061 1.21040 0.94004 0.98034 1.07978 1.21073 0.93978 0.96091 0.97117 1.18135 0.92107 0.91080 1.11930 1.18673 0.91896 0.99078 0.93935 1.21381 0.95326 1.00642 0.96903 1.21314 0.93378 1.00692 0.99229 1.21406 1.00886 0.99205 0.92776 1.21177 0.93345 1.00874 0.99638 1.19945 0.94098 0.97825 0.95179 1.20443 1.00109 0.97444 0.93077 1.21538 0.98157 0.94913 0.89941 1.58682 1.33745 1.25858 1.20108 0.92212 0.86541 0.84093 0.83398 0.84402 0.85587 0.83355 0.83477 0.85546 0.93023 0.92273 0.95618 0.90605 0.84823 0.83427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.11 13.67 21.61 0.30 -54.81 16 2 C -0.01 -0.81 5.49 84.83 0.47 -0.34 16 3 Si 1.01 43.07 29.55 68.60 2.03 45.10 16 4 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.41 -23.42 9.49 67.92 0.64 -22.78 16 8 H 0.10 5.08 5.21 -2.91 -0.02 5.06 16 9 O -0.20 -11.58 7.55 -21.67 -0.16 -11.74 16 10 C 0.13 6.28 5.32 22.81 0.12 6.40 16 11 C -0.25 -10.66 9.16 22.36 0.20 -10.45 16 12 C -0.07 -2.35 10.03 22.29 0.22 -2.13 16 13 C -0.19 -5.73 10.03 22.27 0.22 -5.51 16 14 C -0.06 -2.15 9.73 22.47 0.22 -1.93 16 15 C -0.13 -5.43 4.48 -19.94 -0.09 -5.52 16 16 C -0.04 -1.47 4.95 -20.05 -0.10 -1.57 16 17 C -0.12 -4.48 9.74 22.49 0.22 -4.26 16 18 C -0.13 -3.97 10.03 22.24 0.22 -3.75 16 19 C -0.12 -3.88 10.04 22.32 0.22 -3.66 16 20 C -0.13 -4.78 9.67 22.24 0.22 -4.56 16 21 C -0.07 -2.86 4.94 -19.64 -0.10 -2.96 16 22 C -0.07 -3.04 5.01 29.85 0.15 -2.89 16 23 C 0.09 2.82 6.77 86.30 0.58 3.40 16 24 N -0.85 -25.47 9.62 -186.71 -1.80 -27.26 16 25 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 26 H 0.12 5.08 5.64 -2.91 -0.02 5.06 16 27 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 28 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 29 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 30 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 31 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 32 H 0.15 3.49 8.06 -2.92 -0.02 3.47 16 33 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 34 H 0.05 2.25 8.05 -2.39 -0.02 2.24 16 35 H 0.06 2.89 4.68 -2.39 -0.01 2.88 16 36 H 0.03 0.85 7.96 -2.39 -0.02 0.84 16 37 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 38 H 0.34 10.63 8.99 -89.69 -0.81 9.82 16 39 H 0.35 8.19 9.08 -89.70 -0.81 7.38 16 Total: -1.00 -69.20 329.07 3.26 -65.94 By element: Atomic # 1 Polarization: 45.79 SS G_CDS: -0.54 Total: 45.26 kcal Atomic # 6 Polarization: -65.92 SS G_CDS: 3.43 Total: -62.48 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -1.50 Total: -82.07 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -0.16 Total: -11.74 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -69.20 3.26 -65.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586748.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.824 kcal (2) G-P(sol) polarization free energy of solvation -69.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds