Wall clock time and date at job start Tue Mar 31 2020 06:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86803 * 120.00323 * 2 1 4 4 H 1.48499 * 109.47151 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46787 * 300.00127 * 3 2 1 6 6 H 1.48500 * 109.47155 * 60.00077 * 3 2 1 7 7 C 1.38649 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00466 * 179.97438 * 7 2 1 9 9 O 1.34813 * 120.00122 * 0.02562 * 7 2 1 10 10 C 1.35695 * 117.00226 * 185.06139 * 9 7 2 11 11 C 1.39005 * 119.94570 * 174.29665 * 10 9 7 12 12 C 1.37843 * 120.05004 * 180.28165 * 11 10 9 13 13 C 1.39439 * 119.94480 * 359.97438 * 12 11 10 14 14 C 1.48327 * 120.04674 * 180.02562 * 13 12 11 15 15 C 1.39403 * 120.12214 * 56.79246 * 14 13 12 16 16 C 1.37984 * 119.86966 * 180.02562 * 15 14 13 17 17 C 1.38354 * 120.12677 * 0.02562 * 16 15 14 18 18 C 1.38301 * 120.25043 * 359.97438 * 17 16 15 19 19 C 1.38030 * 120.12841 * 359.71321 * 18 17 16 20 20 C 1.50694 * 120.06620 * 180.30065 * 19 18 17 21 21 C 1.53005 * 109.47293 * 264.58324 * 20 19 18 22 22 N 1.46902 * 109.47365 * 175.03361 * 21 20 19 23 23 C 1.39428 * 119.89741 * 0.02562 * 13 12 11 24 24 C 1.37834 * 119.95074 * 359.97438 * 23 13 12 25 25 H 0.96999 * 119.99334 * 359.97438 * 1 2 3 26 26 H 1.07995 * 119.97454 * 0.28318 * 11 10 9 27 27 H 1.08000 * 120.02840 * 180.02562 * 12 11 10 28 28 H 1.07992 * 120.06575 * 0.02562 * 15 14 13 29 29 H 1.07999 * 119.93369 * 179.97438 * 16 15 14 30 30 H 1.08002 * 119.87039 * 179.97438 * 17 16 15 31 31 H 1.08007 * 119.93779 * 180.02562 * 18 17 16 32 32 H 1.08999 * 109.47413 * 24.58202 * 20 19 18 33 33 H 1.09002 * 109.47444 * 144.58254 * 20 19 18 34 34 H 1.09004 * 109.46695 * 295.02802 * 21 20 19 35 35 H 1.08995 * 109.47397 * 55.02914 * 21 20 19 36 36 H 1.00901 * 110.99874 * 56.04327 * 22 21 20 37 37 H 1.00897 * 110.99625 * 179.97438 * 22 21 20 38 38 H 1.08001 * 120.02270 * 180.02562 * 23 13 12 39 39 H 1.07998 * 119.97609 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7097 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0001 9 8 1.3347 -2.3683 0.0005 10 6 2.0696 -3.5040 0.1077 11 6 1.4329 -4.7332 0.2335 12 6 2.1773 -5.8876 0.3484 13 6 3.5701 -5.8216 0.3378 14 6 4.3733 -7.0625 0.4607 15 6 4.1942 -8.1047 -0.4476 16 6 4.9439 -9.2569 -0.3281 17 6 5.8715 -9.3792 0.6911 18 6 6.0534 -8.3485 1.5951 19 6 5.3137 -7.1887 1.4814 20 6 5.5178 -6.0638 2.4631 21 6 4.4816 -6.1705 3.5838 22 7 4.7539 -5.1469 4.6017 23 6 4.2064 -4.5875 0.2115 24 6 3.4579 -3.4358 0.0969 25 1 -0.4849 0.8401 0.0004 26 1 0.3541 -4.7838 0.2412 27 1 1.6822 -6.8425 0.4457 28 1 3.4701 -8.0104 -1.2433 29 1 4.8057 -10.0651 -1.0310 30 1 6.4558 -10.2831 0.7810 31 1 6.7792 -8.4492 2.3885 32 1 6.5198 -6.1290 2.8874 33 1 5.4018 -5.1087 1.9508 34 1 3.4841 -6.0170 3.1721 35 1 4.5388 -7.1594 4.0386 36 1 4.7704 -4.2249 4.1920 37 1 4.0823 -5.1965 5.3530 38 1 5.2851 -4.5341 0.2027 39 1 3.9503 -2.4796 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243591977.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:03 Heat of formation + Delta-G solvation = 12.309223 kcal Electronic energy + Delta-G solvation = -21269.431128 eV Core-core repulsion = 18141.887944 eV Total energy + Delta-G solvation = -3127.543184 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.80948 -38.66674 -36.40379 -35.35156 -32.54108 -31.91502 -31.36607 -30.26358 -28.12227 -27.10119 -25.43913 -22.95591 -22.69908 -21.71357 -20.98289 -20.19235 -18.05675 -17.20238 -16.54223 -15.76169 -15.57481 -14.96506 -14.63826 -14.57293 -14.23966 -13.99076 -13.71800 -13.66820 -13.48815 -12.86280 -12.73451 -12.66789 -12.38536 -11.77796 -11.76830 -11.54812 -11.44414 -11.14693 -10.98637 -10.80929 -10.64658 -10.48382 -10.36122 -9.43222 -8.98091 -8.73989 -8.62797 -8.48893 -8.27190 -7.14689 -6.53729 -4.11877 1.35063 1.50831 2.13367 2.29810 3.07420 3.09138 3.14643 3.87488 3.90010 4.47293 4.59889 4.95778 5.00561 5.05539 5.11342 5.16697 5.20626 5.31956 5.39333 5.55705 5.62768 5.65254 5.72635 5.77001 6.01814 6.08602 6.13843 6.18987 6.26392 6.33151 6.49441 6.59617 6.66256 6.79755 6.83815 6.96384 7.08649 7.16666 7.23549 7.28597 7.34901 7.47275 7.71181 7.91241 8.91904 9.60729 10.63941 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.022121 B = 0.004132 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.490239 B = 6774.701725 C = 7354.421269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.174 6.174 10 C 0.158 3.842 11 C -0.194 4.194 12 C -0.058 4.058 13 C -0.155 4.155 14 C -0.007 4.007 15 C -0.115 4.115 16 C -0.124 4.124 17 C -0.133 4.133 18 C -0.116 4.116 19 C -0.077 4.077 20 C -0.086 4.086 21 C 0.069 3.931 22 N -0.854 5.854 23 C -0.054 4.054 24 C -0.234 4.234 25 H 0.271 0.729 26 H 0.118 0.882 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.035 0.965 35 H 0.065 0.935 36 H 0.343 0.657 37 H 0.339 0.661 38 H 0.109 0.891 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.344 -12.989 3.091 16.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.077 6.077 10 C 0.103 3.897 11 C -0.213 4.213 12 C -0.076 4.076 13 C -0.156 4.156 14 C -0.007 4.007 15 C -0.133 4.133 16 C -0.142 4.142 17 C -0.151 4.151 18 C -0.134 4.134 19 C -0.078 4.078 20 C -0.123 4.123 21 C -0.061 4.061 22 N -0.382 5.382 23 C -0.072 4.072 24 C -0.253 4.253 25 H 0.081 0.919 26 H 0.136 0.864 27 H 0.129 0.871 28 H 0.139 0.861 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.053 0.947 35 H 0.083 0.917 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.127 0.873 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.593 -13.131 3.167 16.567 hybrid contribution -0.485 1.108 -0.345 1.257 sum 9.108 -12.023 2.821 15.345 Atomic orbital electron populations 1.70048 1.06009 1.27736 1.45596 1.25312 0.95850 0.98915 0.96380 0.85642 0.79188 0.80250 0.78353 1.19007 1.20064 1.20049 1.21401 0.91889 0.80734 1.52852 0.88881 1.83959 1.34520 1.11552 1.77635 1.19457 0.90250 0.88004 0.91976 1.20137 0.99574 0.90259 1.11328 1.20632 0.92357 0.96770 0.97857 1.18155 0.92518 0.91462 1.13445 1.18737 0.94733 0.93452 0.93807 1.21275 0.99927 0.93238 0.98911 1.21025 0.96919 0.97707 0.98547 1.21052 0.99280 0.98806 0.95981 1.20940 0.99845 0.93310 0.99298 1.19892 0.96418 0.95492 0.96005 1.20703 0.99509 0.97687 0.94421 1.21671 0.97205 0.95479 0.91763 1.58818 1.57345 1.08481 1.13598 1.20724 0.98206 0.91300 0.97019 1.21094 0.93721 0.98857 1.11676 0.91945 0.86418 0.87051 0.86112 0.86514 0.86628 0.86409 0.90935 0.89780 0.94660 0.91664 0.84489 0.84883 0.87278 0.85363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.67 13.67 55.48 0.76 -23.91 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.02 29.55 -169.99 -5.02 15.00 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.39 -10.66 9.48 30.88 0.29 -10.37 16 8 H 0.09 2.34 5.19 -52.49 -0.27 2.06 16 9 O -0.17 -4.82 9.75 0.27 0.00 -4.82 16 10 C 0.16 3.67 6.65 -39.02 -0.26 3.41 16 11 C -0.19 -3.97 9.98 -39.44 -0.39 -4.36 16 12 C -0.06 -1.02 9.62 -39.28 -0.38 -1.39 16 13 C -0.15 -2.63 4.66 -104.86 -0.49 -3.11 16 14 C -0.01 -0.11 5.39 -104.90 -0.57 -0.67 16 15 C -0.12 -1.57 9.63 -39.24 -0.38 -1.94 16 16 C -0.12 -1.45 10.03 -39.63 -0.40 -1.85 16 17 C -0.13 -1.50 10.04 -39.52 -0.40 -1.89 16 18 C -0.12 -1.40 9.67 -39.63 -0.38 -1.78 16 19 C -0.08 -1.06 5.14 -104.29 -0.54 -1.60 16 20 C -0.09 -1.14 5.10 -27.88 -0.14 -1.28 16 21 C 0.07 0.92 6.77 -3.82 -0.03 0.89 16 22 N -0.85 -10.50 9.62 -10.37 -0.10 -10.60 16 23 C -0.05 -0.97 7.73 -39.29 -0.30 -1.27 16 24 C -0.23 -4.88 9.15 -39.45 -0.36 -5.24 16 25 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.12 2.34 8.06 -52.49 -0.42 1.91 16 27 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 28 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 31 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 32 H 0.07 0.90 8.05 -51.93 -0.42 0.48 16 33 H 0.08 1.21 4.70 -51.93 -0.24 0.97 16 34 H 0.04 0.53 7.89 -51.93 -0.41 0.12 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.34 4.27 8.99 -39.29 -0.35 3.91 16 37 H 0.34 3.67 9.08 -39.29 -0.36 3.31 16 38 H 0.11 1.74 7.15 -52.49 -0.38 1.37 16 39 H 0.13 2.69 5.62 -52.49 -0.30 2.39 16 LS Contribution 329.93 15.07 4.97 4.97 Total: -1.00 -29.36 329.93 -9.02 -38.39 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -4.82 Total: 12.46 kcal Atomic # 6 Polarization: -26.68 SS G_CDS: -4.81 Total: -31.49 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.66 Total: -34.50 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: 0.00 Total: -4.82 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.36 -9.02 -38.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591977.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.695 kcal (2) G-P(sol) polarization free energy of solvation -29.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds