Wall clock time and date at job start Tue Mar 31 2020 06:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86805 * 119.99912 * 2 1 4 4 H 1.48494 * 109.46869 * 239.99952 * 3 2 1 5 5 H 1.48495 * 109.47092 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46891 * 120.00041 * 3 2 1 7 7 C 1.38644 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00007 * 179.97438 * 7 2 1 9 9 O 1.34813 * 120.00126 * 0.02562 * 7 2 1 10 10 C 1.35693 * 117.00192 * 185.05852 * 9 7 2 11 11 C 1.38995 * 119.94860 * 354.44581 * 10 9 7 12 12 C 1.37838 * 120.05751 * 180.02562 * 11 10 9 13 13 C 1.39438 * 119.94406 * 359.97438 * 12 11 10 14 14 C 1.48325 * 120.05240 * 179.97438 * 13 12 11 15 15 C 1.39373 * 120.12278 * 359.71864 * 14 13 12 16 16 C 1.38016 * 119.87248 * 179.77081 * 15 14 13 17 17 C 1.38330 * 120.12215 * 0.53569 * 16 15 14 18 18 C 1.50696 * 119.87336 * 179.72522 * 17 16 15 19 19 C 1.53008 * 109.46793 * 269.97395 * 18 17 16 20 20 N 1.46905 * 109.46787 * 179.97438 * 19 18 17 21 21 C 1.38336 * 120.25254 * 359.69286 * 17 16 15 22 22 C 1.38004 * 120.12331 * 0.05393 * 21 17 16 23 23 C 1.39433 * 119.89687 * 0.25262 * 13 12 11 24 24 C 1.37843 * 119.94895 * 359.53238 * 23 13 12 25 25 H 0.97002 * 120.00230 * 0.02562 * 1 2 3 26 26 H 1.08006 * 119.97465 * 0.02562 * 11 10 9 27 27 H 1.07996 * 120.03310 * 179.97438 * 12 11 10 28 28 H 1.08000 * 120.06544 * 0.02646 * 15 14 13 29 29 H 1.07999 * 119.93632 * 180.23238 * 16 15 14 30 30 H 1.08997 * 109.47275 * 29.97240 * 18 17 16 31 31 H 1.09005 * 109.47405 * 149.97565 * 18 17 16 32 32 H 1.08997 * 109.47084 * 299.99963 * 19 18 17 33 33 H 1.08997 * 109.47163 * 59.99638 * 19 18 17 34 34 H 1.00898 * 110.99667 * 179.97438 * 20 19 18 35 35 H 1.00893 * 111.00338 * 303.95033 * 20 19 18 36 36 H 1.07996 * 119.93509 * 180.02562 * 21 17 16 37 37 H 1.08005 * 120.06214 * 179.97438 * 22 21 17 38 38 H 1.07997 * 120.03031 * 179.74922 * 23 13 12 39 39 H 1.07994 * 119.97651 * 180.18770 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0001 9 8 1.3347 -2.3682 0.0005 10 6 2.0697 -3.5039 0.1077 11 6 3.4579 -3.4359 0.0946 12 6 4.2066 -4.5881 0.2027 13 6 3.5702 -5.8227 0.3259 14 6 4.3736 -7.0641 0.4419 15 6 5.7657 -7.0008 0.4222 16 6 6.5082 -8.1587 0.5352 17 6 5.8730 -9.3816 0.6567 18 6 6.6892 -10.6430 0.7736 19 6 6.9565 -11.2085 -0.6228 20 7 7.7527 -12.4379 -0.5089 21 6 4.4915 -9.4509 0.6721 22 6 3.7390 -8.2990 0.5650 23 6 2.1775 -5.8889 0.3340 24 6 1.4330 -4.7335 0.2301 25 1 -0.4850 0.8400 -0.0004 26 1 3.9504 -2.4793 -0.0004 27 1 5.2852 -4.5348 0.1921 28 1 6.2626 -6.0471 0.3228 29 1 7.5870 -8.1105 0.5239 30 1 7.6373 -10.4184 1.2622 31 1 6.1410 -11.3771 1.3641 32 1 6.0085 -11.4331 -1.1114 33 1 7.5046 -10.4745 -1.2133 34 1 7.9424 -12.8313 -1.4185 35 1 8.6086 -12.2688 -0.0021 36 1 4.0009 -10.4082 0.7676 37 1 2.6604 -8.3543 0.5767 38 1 1.6824 -6.8444 0.4252 39 1 0.3543 -4.7840 0.2394 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243593307.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:05 Heat of formation + Delta-G solvation = 9.823781 kcal Electronic energy + Delta-G solvation = -20206.250780 eV Core-core repulsion = 17078.599819 eV Total energy + Delta-G solvation = -3127.650961 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.66005 -38.75801 -36.71736 -35.47708 -32.66195 -32.03989 -31.14765 -30.04555 -29.22672 -26.58087 -25.34145 -23.18672 -23.01077 -21.52379 -21.18083 -20.14857 -18.07898 -17.38841 -16.51888 -15.96341 -15.69770 -15.12618 -14.83554 -14.47738 -14.23243 -13.88534 -13.77876 -13.72464 -13.45051 -13.27184 -12.87289 -12.71887 -12.36131 -12.11153 -11.78276 -11.51281 -11.38595 -11.29201 -11.05326 -10.91657 -10.67445 -10.57093 -10.39011 -9.40870 -9.12261 -9.05379 -8.79870 -8.55779 -8.29525 -6.96763 -6.55189 -4.11852 1.14779 1.56560 2.16681 2.48292 3.07993 3.09400 3.12054 3.88621 3.91877 4.23551 4.62256 4.73906 4.95918 4.98748 5.02213 5.05944 5.07674 5.12346 5.29088 5.36876 5.51582 5.53974 5.62713 5.68822 5.83303 5.85754 6.06262 6.15448 6.20961 6.29634 6.46651 6.62495 6.69194 6.69969 6.75845 6.84666 6.97762 7.04942 7.11484 7.25484 7.31911 7.36707 7.71851 7.89666 8.89743 9.58114 10.61989 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.044643 B = 0.002684 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.052631 B =10431.175471 C =10916.437697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.170 6.170 10 C 0.159 3.841 11 C -0.236 4.236 12 C -0.053 4.053 13 C -0.162 4.162 14 C 0.001 3.999 15 C -0.130 4.130 16 C -0.109 4.109 17 C -0.111 4.111 18 C -0.073 4.073 19 C 0.065 3.935 20 N -0.854 5.854 21 C -0.107 4.107 22 C -0.130 4.130 23 C -0.057 4.057 24 C -0.194 4.194 25 H 0.273 0.727 26 H 0.129 0.871 27 H 0.111 0.889 28 H 0.122 0.878 29 H 0.114 0.886 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.028 0.972 34 H 0.341 0.659 35 H 0.339 0.661 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.116 0.884 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.506 -16.511 0.012 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.072 6.072 10 C 0.104 3.896 11 C -0.255 4.255 12 C -0.071 4.071 13 C -0.163 4.163 14 C 0.001 3.999 15 C -0.148 4.148 16 C -0.127 4.127 17 C -0.112 4.112 18 C -0.110 4.110 19 C -0.065 4.065 20 N -0.384 5.384 21 C -0.125 4.125 22 C -0.148 4.148 23 C -0.075 4.075 24 C -0.213 4.213 25 H 0.082 0.918 26 H 0.147 0.853 27 H 0.129 0.871 28 H 0.139 0.861 29 H 0.132 0.868 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.046 0.954 34 H 0.154 0.846 35 H 0.151 0.849 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.134 0.866 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.415 -16.545 0.387 20.105 hybrid contribution 1.210 1.443 -0.574 1.968 sum 12.625 -15.103 -0.187 19.685 Atomic orbital electron populations 1.70026 1.06028 1.28071 1.44998 1.25338 0.95886 0.98991 0.96295 0.85747 0.78732 0.79505 0.79295 1.19393 1.20171 1.19372 1.21340 0.91917 0.80723 1.52878 0.88878 1.83952 1.34620 1.11602 1.77014 1.19492 0.90300 0.87986 0.91786 1.21102 0.93728 0.98933 1.11755 1.20823 0.98446 0.91482 0.96324 1.18247 0.92698 0.91605 1.13787 1.18857 0.92669 0.92569 0.95833 1.21182 0.93371 0.98226 1.02032 1.20859 0.99141 0.92061 1.00641 1.19659 0.93843 0.94345 1.03365 1.20478 0.99421 0.94366 0.96775 1.21805 0.98122 0.89948 0.96670 1.58730 1.25343 1.30201 1.24080 1.20885 0.93178 0.98018 1.00382 1.21195 0.99886 0.91766 1.01909 1.20716 0.92619 0.96891 0.97251 1.20160 0.99689 0.90171 1.11264 0.91756 0.85289 0.87110 0.86061 0.86761 0.91612 0.90522 0.90834 0.95380 0.84644 0.84901 0.86470 0.85958 0.86640 0.86222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.64 13.67 55.48 0.76 -23.88 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.04 29.55 -169.99 -5.02 15.01 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 7 C -0.39 -10.74 9.48 30.88 0.29 -10.45 16 8 H 0.09 2.34 5.19 -52.49 -0.27 2.07 16 9 O -0.17 -4.75 9.75 0.27 0.00 -4.75 16 10 C 0.16 3.80 6.65 -39.02 -0.26 3.54 16 11 C -0.24 -5.06 9.15 -39.45 -0.36 -5.42 16 12 C -0.05 -0.97 9.42 -39.28 -0.37 -1.34 16 13 C -0.16 -2.90 5.88 -104.85 -0.62 -3.51 16 14 C 0.00 0.01 5.88 -104.90 -0.62 -0.60 16 15 C -0.13 -1.81 9.43 -39.24 -0.37 -2.18 16 16 C -0.11 -1.31 9.68 -39.63 -0.38 -1.69 16 17 C -0.11 -1.28 5.14 -104.55 -0.54 -1.81 16 18 C -0.07 -0.66 5.60 -27.88 -0.16 -0.82 16 19 C 0.07 0.55 6.77 -3.82 -0.03 0.52 16 20 N -0.85 -6.13 9.62 -10.36 -0.10 -6.23 16 21 C -0.11 -1.28 9.68 -39.63 -0.38 -1.67 16 22 C -0.13 -1.79 9.43 -39.24 -0.37 -2.16 16 23 C -0.06 -1.02 9.42 -39.28 -0.37 -1.39 16 24 C -0.19 -4.05 9.98 -39.44 -0.39 -4.44 16 25 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.13 2.73 5.62 -52.48 -0.30 2.44 16 27 H 0.11 1.73 6.20 -52.49 -0.33 1.41 16 28 H 0.12 1.56 6.20 -52.49 -0.33 1.23 16 29 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 31 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.34 1.94 9.08 -39.29 -0.36 1.58 16 35 H 0.34 1.98 8.99 -39.30 -0.35 1.63 16 36 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.12 1.54 6.20 -52.48 -0.33 1.21 16 38 H 0.12 1.73 6.20 -52.49 -0.33 1.40 16 39 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 LS Contribution 329.61 15.07 4.97 4.97 Total: -1.00 -30.14 329.61 -9.08 -39.22 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -4.67 Total: 8.09 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: -5.02 Total: -32.43 kcal Atomic # 7 Polarization: -30.77 SS G_CDS: 0.66 Total: -30.11 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: 0.00 Total: -4.75 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.14 -9.08 -39.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243593307.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.041 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds