Wall clock time and date at job start Tue Mar 31 2020 05:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47242 * 180.02562 * 11 10 9 13 13 C 1.35346 * 126.75136 * 124.70936 * 12 11 10 14 14 N 1.35316 * 106.17696 * 179.85675 * 13 12 11 15 15 C 1.46507 * 125.86959 * 180.11860 * 14 13 12 16 16 C 1.53000 * 109.46723 * 125.32618 * 15 14 13 17 17 O 1.42908 * 109.46803 * 180.02562 * 16 15 14 18 18 C 1.42898 * 113.99670 * 180.02562 * 17 16 15 19 19 C 1.50706 * 109.46841 * 180.02562 * 18 17 16 20 20 O 1.20822 * 119.99738 * 359.97438 * 19 18 17 21 21 O 1.34227 * 119.99611 * 180.02562 * 19 18 17 22 22 N 1.28715 * 108.25962 * 0.41795 * 14 13 12 23 23 N 1.28632 * 110.18138 * 359.73745 * 22 14 13 24 24 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 26 26 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 27 27 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 28 28 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 29 29 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 30 30 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 31 31 H 1.08001 * 126.91466 * 0.02562 * 13 12 11 32 32 H 1.08997 * 109.47042 * 245.32414 * 15 14 13 33 33 H 1.08998 * 109.47136 * 5.33076 * 15 14 13 34 34 H 1.09004 * 109.47522 * 299.99898 * 16 15 14 35 35 H 1.09001 * 109.47333 * 60.00022 * 16 15 14 36 36 H 1.09003 * 109.47221 * 299.99885 * 18 17 16 37 37 H 1.09000 * 109.47150 * 59.99906 * 18 17 16 38 38 H 0.96706 * 116.99462 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4597 -6.1325 -0.0005 13 6 2.5160 -7.1493 0.8909 14 7 3.5433 -7.9380 0.4988 15 6 3.9834 -9.1676 1.1627 16 6 4.0001 -10.3153 0.1510 17 8 4.4289 -11.5149 0.7987 18 6 4.4805 -12.6539 -0.0627 19 6 4.9417 -13.8558 0.7208 20 8 5.2002 -13.7478 1.8961 21 8 5.0664 -15.0459 0.1127 22 7 4.0714 -7.4188 -0.5539 23 7 3.4482 -6.3410 -0.8775 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6248 -2.5571 0.8896 27 1 2.8721 -3.6042 -0.8905 28 1 2.8721 -3.6043 0.8895 29 1 0.8535 -5.0450 0.8885 30 1 0.8542 -5.0446 -0.8914 31 1 1.8692 -7.3023 1.7422 32 1 4.9859 -9.0241 1.5659 33 1 3.2965 -9.4084 1.9739 34 1 2.9977 -10.4589 -0.2522 35 1 4.6871 -10.0746 -0.6603 36 1 3.4882 -12.8458 -0.4711 37 1 5.1779 -12.4616 -0.8780 38 1 5.3659 -15.7874 0.6564 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254089841.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:43 Heat of formation + Delta-G solvation = -49.498678 kcal Electronic energy + Delta-G solvation = -20539.811732 eV Core-core repulsion = 16998.739094 eV Total energy + Delta-G solvation = -3541.072639 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.19353 -40.83157 -38.70442 -36.66722 -35.59220 -34.34152 -32.50768 -30.88590 -30.39075 -28.61393 -27.00380 -24.53385 -23.66266 -22.44837 -21.79814 -20.92128 -19.81609 -18.78673 -17.79132 -17.47240 -17.32468 -16.53112 -16.34483 -16.04967 -15.81781 -14.79208 -14.64758 -14.47084 -14.15596 -13.95735 -13.41649 -13.30206 -12.51445 -12.36521 -12.22827 -12.08076 -11.85973 -11.63045 -11.37988 -11.09807 -10.84629 -10.76096 -10.53048 -10.46720 -10.44211 -10.04544 -9.58351 -9.34272 -9.08883 -8.78283 -8.27137 -5.92958 -3.94306 1.50890 1.56875 1.72919 2.32877 2.72874 3.38606 3.39072 3.42586 3.46209 4.05910 4.21256 4.38481 4.39944 4.51633 4.53110 4.56166 4.61827 4.87026 5.02594 5.09948 5.24210 5.42850 5.60156 5.85674 6.00874 6.07938 6.13493 6.21679 6.52720 6.56464 6.84150 6.99888 7.24287 7.27220 7.76205 7.91697 8.08110 8.51957 8.61617 9.12591 9.69187 11.18402 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.069356 B = 0.001967 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.616352 B =14234.872120 C =14309.770247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.103 4.103 11 C -0.038 4.038 12 C 0.004 3.996 13 C -0.056 4.056 14 N -0.299 5.299 15 C 0.123 3.877 16 C 0.054 3.946 17 O -0.366 6.366 18 C 0.074 3.926 19 C 0.480 3.520 20 O -0.493 6.493 21 O -0.514 6.514 22 N -0.095 5.095 23 N -0.255 5.255 24 H 0.260 0.740 25 H 0.017 0.983 26 H 0.015 0.985 27 H 0.056 0.944 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.190 0.810 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.502 -30.379 1.542 31.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.141 4.141 11 C -0.077 4.077 12 C -0.134 4.134 13 C -0.205 4.205 14 N -0.095 5.095 15 C 0.001 3.999 16 C -0.024 4.024 17 O -0.284 6.284 18 C -0.004 4.004 19 C 0.321 3.679 20 O -0.379 6.379 21 O -0.328 6.328 22 N -0.074 5.074 23 N -0.123 5.123 24 H 0.069 0.931 25 H 0.035 0.965 26 H 0.034 0.966 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.207 0.793 32 H 0.127 0.873 33 H 0.134 0.866 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 7.455 -30.079 0.781 30.999 hybrid contribution -0.191 0.377 1.090 1.169 sum 7.264 -29.702 1.871 30.635 Atomic orbital electron populations 1.69949 1.05998 1.26573 1.51159 1.25013 0.94846 0.99166 0.95465 0.86673 0.79582 0.83211 0.78613 1.20244 1.21349 1.20335 1.21245 0.93065 0.91141 1.50186 0.92773 1.19117 0.93996 0.91336 0.97196 1.21584 0.99021 0.92575 1.00928 1.20158 0.94322 0.90516 1.02733 1.22448 0.98862 0.98611 0.93456 1.23446 0.96591 0.95313 1.05144 1.47054 1.22530 1.19208 1.20708 1.21610 1.04300 0.79404 0.94554 1.22690 1.00837 0.83449 0.95408 1.87833 1.88882 1.16237 1.35446 1.21611 1.03468 0.83362 0.91913 1.22831 0.74660 0.84122 0.86315 1.90784 1.44879 1.85009 1.17220 1.84449 1.80703 1.19780 1.47841 1.78258 1.20950 1.06670 1.01533 1.75103 1.06371 1.07648 1.23156 0.93056 0.96450 0.96621 0.92513 0.93621 0.90575 0.90384 0.79266 0.87309 0.86628 0.91634 0.90498 0.88350 0.88188 0.72184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.10 -2.21 5.13 -26.73 -0.14 -2.35 16 11 C -0.04 -0.65 5.79 -27.89 -0.16 -0.81 16 12 C 0.00 0.06 6.50 -82.78 -0.54 -0.48 16 13 C -0.06 -0.67 11.49 -17.05 -0.20 -0.87 16 14 N -0.30 -3.46 3.44 -61.26 -0.21 -3.67 16 15 C 0.12 0.90 6.83 -4.04 -0.03 0.88 16 16 C 0.05 0.35 6.07 37.16 0.23 0.58 16 17 O -0.37 -2.70 9.88 -55.19 -0.54 -3.25 16 18 C 0.07 0.35 6.53 36.01 0.24 0.59 16 19 C 0.48 3.13 8.40 36.01 0.30 3.43 16 20 O -0.49 -5.28 17.26 -25.47 -0.44 -5.72 16 21 O -0.51 -1.95 13.42 -39.25 -0.53 -2.48 16 22 N -0.10 -1.45 12.91 60.35 0.78 -0.67 16 23 N -0.26 -4.56 12.40 33.29 0.41 -4.14 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.15 8.12 -51.93 -0.42 0.72 16 30 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.19 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.12 0.59 8.07 -51.93 -0.42 0.17 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.52 8.12 -51.93 -0.42 0.10 16 36 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.42 -0.04 9.10 45.56 0.41 0.38 16 LS Contribution 340.54 15.07 5.13 5.13 Total: -1.00 -37.84 340.54 -5.15 -42.98 By element: Atomic # 1 Polarization: -1.70 SS G_CDS: -4.62 Total: -6.32 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -0.85 Total: -12.48 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 1.72 Total: -35.01 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: -1.51 Total: -11.44 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -37.84 -5.15 -42.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254089841.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.515 kcal (2) G-P(sol) polarization free energy of solvation -37.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds