Wall clock time and date at job start Tue Mar 31 2020 05:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.50696 * 109.47242 * 180.02562 * 11 10 9 13 13 C 1.35346 * 126.75136 * 124.70936 * 12 11 10 14 14 N 1.35316 * 106.17696 * 179.85675 * 13 12 11 15 15 C 1.46507 * 125.86959 * 180.11860 * 14 13 12 16 16 C 1.53000 * 109.46723 * 125.32618 * 15 14 13 17 17 O 1.42908 * 109.46803 * 180.02562 * 16 15 14 18 18 C 1.42898 * 113.99670 * 180.02562 * 17 16 15 19 19 C 1.50706 * 109.46841 * 180.02562 * 18 17 16 20 20 O 1.20822 * 119.99738 * 359.97438 * 19 18 17 21 21 O 1.34227 * 119.99611 * 180.02562 * 19 18 17 22 22 N 1.28715 * 108.25962 * 0.41795 * 14 13 12 23 23 N 1.28632 * 110.18138 * 359.73745 * 22 14 13 24 24 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 26 26 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 27 27 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 28 28 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 29 29 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 30 30 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 31 31 H 1.08001 * 126.91466 * 0.02562 * 13 12 11 32 32 H 1.08997 * 109.47042 * 245.32414 * 15 14 13 33 33 H 1.08998 * 109.47136 * 5.33076 * 15 14 13 34 34 H 1.09004 * 109.47522 * 299.99898 * 16 15 14 35 35 H 1.09001 * 109.47333 * 60.00022 * 16 15 14 36 36 H 1.09003 * 109.47221 * 299.99885 * 18 17 16 37 37 H 1.09000 * 109.47150 * 59.99906 * 18 17 16 38 38 H 0.96706 * 116.99462 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4597 -6.1325 -0.0005 13 6 2.5160 -7.1493 0.8909 14 7 3.5433 -7.9380 0.4988 15 6 3.9834 -9.1676 1.1627 16 6 4.0001 -10.3153 0.1510 17 8 4.4289 -11.5149 0.7987 18 6 4.4805 -12.6539 -0.0627 19 6 4.9417 -13.8558 0.7208 20 8 5.2002 -13.7478 1.8961 21 8 5.0664 -15.0459 0.1127 22 7 4.0714 -7.4188 -0.5539 23 7 3.4482 -6.3410 -0.8775 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6248 -2.5571 0.8896 27 1 2.8721 -3.6042 -0.8905 28 1 2.8721 -3.6043 0.8895 29 1 0.8535 -5.0450 0.8885 30 1 0.8542 -5.0446 -0.8914 31 1 1.8692 -7.3023 1.7422 32 1 4.9859 -9.0241 1.5659 33 1 3.2965 -9.4084 1.9739 34 1 2.9977 -10.4589 -0.2522 35 1 4.6871 -10.0746 -0.6603 36 1 3.4882 -12.8458 -0.4711 37 1 5.1779 -12.4616 -0.8780 38 1 5.3659 -15.7874 0.6564 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254089841.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:42 Heat of formation + Delta-G solvation = -77.177231 kcal Electronic energy + Delta-G solvation = -20541.011965 eV Core-core repulsion = 16998.739094 eV Total energy + Delta-G solvation = -3542.272871 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.23270 -41.30782 -39.17945 -37.15346 -36.86326 -35.72707 -34.35444 -32.03894 -31.41442 -29.24498 -28.63585 -25.63665 -25.10822 -22.92185 -22.72881 -22.43630 -21.23609 -19.24843 -18.64210 -18.26977 -17.99849 -17.76089 -17.27018 -16.90392 -16.53294 -16.37916 -15.96013 -15.47515 -15.11945 -14.95082 -14.52291 -14.14592 -13.94663 -13.67596 -13.30278 -13.00459 -12.89007 -12.65199 -12.63089 -12.53573 -12.46296 -12.33627 -11.82173 -11.63225 -11.45578 -11.30606 -11.14116 -11.01288 -10.91285 -10.50756 -10.02677 -8.16721 -6.26778 0.61062 1.09336 1.10498 1.40752 1.43847 1.51673 1.55683 1.77239 2.43566 2.92662 3.15838 3.37449 3.65428 3.74067 3.94888 4.07503 4.13111 4.15573 4.21833 4.26764 4.34302 4.47193 4.53448 4.57718 4.75456 4.86971 5.16176 5.22642 5.26061 5.35552 5.51381 5.57751 5.62911 5.80131 5.83500 5.91777 6.31555 6.89096 6.92324 7.41439 7.53460 8.94494 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.069356 B = 0.001967 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.616352 B =14234.872120 C =14309.770247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.052 0.948 9 C 0.025 3.975 10 C -0.087 4.087 11 C -0.026 4.026 12 C -0.030 4.030 13 C -0.026 4.026 14 N -0.286 5.286 15 C 0.115 3.885 16 C 0.060 3.940 17 O -0.385 6.385 18 C 0.067 3.933 19 C 0.486 3.514 20 O -0.544 6.544 21 O -0.506 6.506 22 N -0.114 5.114 23 N -0.303 5.303 24 H 0.264 0.736 25 H -0.006 1.006 26 H 0.003 0.997 27 H 0.037 0.963 28 H 0.043 0.957 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.236 0.764 32 H 0.113 0.887 33 H 0.146 0.854 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.712 -31.598 2.284 32.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.070 0.930 9 C -0.012 4.012 10 C -0.126 4.126 11 C -0.065 4.065 12 C -0.168 4.168 13 C -0.177 4.177 14 N -0.081 5.081 15 C -0.005 4.005 16 C -0.017 4.017 17 O -0.304 6.304 18 C -0.009 4.009 19 C 0.329 3.671 20 O -0.434 6.434 21 O -0.321 6.321 22 N -0.093 5.093 23 N -0.170 5.170 24 H 0.073 0.927 25 H 0.013 0.987 26 H 0.021 0.979 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.118 0.882 30 H 0.090 0.910 31 H 0.252 0.748 32 H 0.131 0.869 33 H 0.164 0.836 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 7.694 -31.354 1.497 32.319 hybrid contribution -0.251 0.603 0.866 1.085 sum 7.443 -30.751 2.363 31.727 Atomic orbital electron populations 1.70066 1.07518 1.27754 1.51627 1.25916 0.95821 1.03068 0.94799 0.85562 0.78372 0.78461 0.79011 1.19605 1.20450 1.19293 1.21684 0.93322 0.92840 1.50609 0.92991 1.19023 0.94336 0.92542 0.95342 1.21311 0.97885 0.93561 0.99808 1.19912 0.94273 0.88673 1.03676 1.22316 0.99350 0.99930 0.95183 1.23982 0.95845 0.93301 1.04525 1.47357 1.21530 1.19721 1.19483 1.22004 1.05416 0.77964 0.95165 1.22579 1.01243 0.83104 0.94796 1.87794 1.89135 1.16911 1.36546 1.21898 1.05438 0.81971 0.91637 1.23198 0.73277 0.84990 0.85657 1.90767 1.47430 1.85824 1.19338 1.84425 1.80118 1.19717 1.47837 1.78168 1.21484 1.06511 1.03155 1.75040 1.07764 1.09204 1.24961 0.92744 0.98712 0.97873 0.94403 0.93839 0.88210 0.90960 0.74768 0.86875 0.83572 0.90601 0.91140 0.85770 0.86145 0.70291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.96 45.49 29.54 68.60 2.03 47.51 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 7 C -0.55 -32.36 9.11 25.60 0.23 -32.12 16 8 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 9 C 0.02 1.33 4.97 29.85 0.15 1.47 16 10 C -0.09 -3.83 5.13 30.60 0.16 -3.67 16 11 C -0.03 -0.88 5.79 29.85 0.17 -0.71 16 12 C -0.03 -0.91 6.50 41.59 0.27 -0.64 16 13 C -0.03 -0.55 11.49 83.49 0.96 0.41 16 14 N -0.29 -5.93 3.44 -347.73 -1.20 -7.13 16 15 C 0.11 1.35 6.83 86.38 0.59 1.94 16 16 C 0.06 0.65 6.07 71.98 0.44 1.08 16 17 O -0.39 -4.92 9.88 -129.90 -1.28 -6.20 16 18 C 0.07 0.50 6.53 71.24 0.47 0.96 16 19 C 0.49 5.68 8.40 71.24 0.60 6.28 16 20 O -0.54 -11.42 17.26 28.41 0.49 -10.93 16 21 O -0.51 -2.93 13.42 -51.39 -0.69 -3.62 16 22 N -0.11 -3.38 12.91 37.02 0.48 -2.91 16 23 N -0.30 -10.81 12.40 -48.60 -0.60 -11.41 16 24 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 25 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 26 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 27 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.10 2.84 8.12 -2.39 -0.02 2.82 16 30 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.24 2.59 8.06 -2.91 -0.02 2.56 16 32 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.15 0.87 8.07 -2.39 -0.02 0.85 16 34 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.07 0.85 8.12 -2.39 -0.02 0.83 16 36 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.43 -0.73 9.10 -74.05 -0.67 -1.41 16 Total: -1.00 -84.08 340.54 4.40 -79.68 By element: Atomic # 1 Polarization: -4.19 SS G_CDS: 0.40 Total: -3.79 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: 4.49 Total: -24.42 kcal Atomic # 7 Polarization: -77.19 SS G_CDS: -1.04 Total: -78.23 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -1.48 Total: -20.75 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -84.08 4.40 -79.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254089841.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.507 kcal (2) G-P(sol) polarization free energy of solvation -84.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds