Wall clock time and date at job start Tue Mar 31 2020 05:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00038 * 2 1 4 4 H 1.48507 * 109.46833 * 269.99940 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.99514 * 3 2 1 6 6 H 1.48492 * 109.47236 * 149.99615 * 3 2 1 7 7 C 1.37876 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00034 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00212 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47126 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46816 * 180.02562 * 10 9 7 12 12 C 1.35353 * 126.75076 * 124.99944 * 11 10 9 13 13 N 1.35309 * 106.17498 * 179.97438 * 12 11 10 14 14 C 1.46499 * 125.87027 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47215 * 124.97307 * 14 13 12 16 16 O 1.42897 * 109.47415 * 180.02562 * 15 14 13 17 17 C 1.42898 * 114.00163 * 180.02562 * 16 15 14 18 18 C 1.53005 * 109.47172 * 179.97438 * 17 16 15 19 19 C 1.50696 * 109.47333 * 180.02562 * 18 17 16 20 20 O 1.20826 * 119.99744 * 359.97438 * 19 18 17 21 21 O 1.34226 * 120.00029 * 180.02562 * 19 18 17 22 22 N 1.28714 * 108.26535 * 359.97438 * 13 12 11 23 23 N 1.28637 * 110.18046 * 0.02562 * 22 13 12 24 24 H 0.96997 * 120.00214 * 0.02562 * 1 2 3 25 25 H 1.09009 * 109.46858 * 59.99942 * 9 7 2 26 26 H 1.09003 * 109.47046 * 300.00339 * 9 7 2 27 27 H 1.08997 * 109.47274 * 60.00636 * 10 9 7 28 28 H 1.09004 * 109.46966 * 299.99799 * 10 9 7 29 29 H 1.08002 * 126.91189 * 359.97438 * 12 11 10 30 30 H 1.08997 * 109.47592 * 244.97299 * 14 13 12 31 31 H 1.09007 * 109.46901 * 4.97623 * 14 13 12 32 32 H 1.09001 * 109.47531 * 300.00255 * 15 14 13 33 33 H 1.09007 * 109.46928 * 60.00332 * 15 14 13 34 34 H 1.08999 * 109.47287 * 299.99832 * 17 16 15 35 35 H 1.09002 * 109.46934 * 60.00275 * 17 16 15 36 36 H 1.08998 * 109.47394 * 300.00548 * 18 17 16 37 37 H 1.09002 * 109.46871 * 59.99825 * 18 17 16 38 38 H 0.96698 * 116.99688 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4918 -4.9672 0.0012 12 6 1.6266 -5.9797 -0.8869 13 7 0.7570 -6.9406 -0.4978 14 6 0.5493 -8.2301 -1.1613 15 6 0.7443 -9.3614 -0.1498 16 8 0.5423 -10.6192 -0.7971 17 6 0.7012 -11.7483 0.0642 18 6 0.4627 -13.0338 -0.7307 19 6 0.6297 -14.2245 0.1777 20 8 0.9112 -14.0617 1.3414 21 8 0.4668 -15.4658 -0.3061 22 7 0.1435 -6.5270 0.5554 23 7 0.5589 -5.3533 0.8788 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5572 -0.8898 26 1 0.6240 -2.5568 0.8903 27 1 2.8713 -3.6040 0.8923 28 1 2.8727 -3.6047 -0.8878 29 1 2.2940 -6.0138 -1.7353 30 1 -0.4628 -8.2729 -1.5636 31 1 1.2681 -8.3408 -1.9733 32 1 1.7564 -9.3187 0.2525 33 1 0.0255 -9.2507 0.6621 34 1 1.7122 -11.7550 0.4716 35 1 -0.0190 -11.6872 0.8801 36 1 -0.5484 -13.0268 -1.1379 37 1 1.1826 -13.0951 -1.5469 38 1 0.5838 -16.1978 0.3148 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254090125.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:41 Heat of formation + Delta-G solvation = -52.612296 kcal Electronic energy + Delta-G solvation = -20555.110656 eV Core-core repulsion = 17013.903000 eV Total energy + Delta-G solvation = -3541.207656 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.90152 -40.84933 -38.67202 -36.75293 -35.29023 -33.80805 -32.56555 -31.90023 -29.87027 -28.94485 -25.30707 -25.20799 -24.13120 -21.87240 -21.71344 -21.35395 -19.78803 -18.79382 -17.75996 -17.25641 -17.00403 -16.50737 -16.27628 -15.94419 -15.69663 -14.90927 -14.51097 -14.45772 -14.31668 -13.65834 -13.37119 -13.06613 -12.73526 -12.53847 -12.12942 -12.07730 -11.84906 -11.82048 -11.42911 -11.22199 -10.98962 -10.89715 -10.63585 -10.46214 -10.20273 -10.00251 -9.67222 -9.47877 -9.04650 -8.54083 -8.26887 -5.92175 -3.95301 1.59629 1.81325 2.04309 2.49622 3.05415 3.36578 3.42847 3.46227 3.47439 4.09761 4.27253 4.34713 4.46273 4.51551 4.73695 4.79443 4.82254 4.93555 5.05073 5.08989 5.18180 5.27769 5.41210 5.43287 5.57923 5.90062 5.90361 6.46388 6.50847 6.55656 6.72579 6.83000 7.10551 7.27403 7.77023 7.93255 8.10303 8.47096 8.91317 9.12300 9.68038 11.19028 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.075572 B = 0.001971 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.419491 B =14204.693572 C =14207.767629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.029 3.971 10 C -0.034 4.034 11 C 0.012 3.988 12 C -0.065 4.065 13 N -0.301 5.301 14 C 0.124 3.876 15 C 0.055 3.945 16 O -0.385 6.385 17 C 0.075 3.925 18 C -0.114 4.114 19 C 0.485 3.515 20 O -0.515 6.515 21 O -0.515 6.515 22 N -0.099 5.099 23 N -0.254 5.254 24 H 0.260 0.740 25 H 0.014 0.986 26 H 0.027 0.973 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.188 0.812 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.370 -30.031 -5.175 30.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.009 4.009 10 C -0.073 4.073 11 C -0.125 4.125 12 C -0.214 4.214 13 N -0.098 5.098 14 C 0.002 3.998 15 C -0.022 4.022 16 O -0.304 6.304 17 C -0.002 4.002 18 C -0.151 4.151 19 C 0.328 3.672 20 O -0.403 6.403 21 O -0.327 6.327 22 N -0.078 5.078 23 N -0.121 5.121 24 H 0.070 0.930 25 H 0.032 0.968 26 H 0.045 0.955 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.205 0.795 30 H 0.124 0.876 31 H 0.130 0.870 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 1.129 -29.933 -4.261 30.256 hybrid contribution 1.290 0.527 -0.328 1.431 sum 2.419 -29.406 -4.589 29.860 Atomic orbital electron populations 1.69986 1.06059 1.26502 1.50643 1.25023 0.94815 0.99200 0.95399 0.86598 0.79847 0.83576 0.77972 1.20766 1.21282 1.19864 1.21242 0.93010 0.90994 1.50797 0.92540 1.19043 0.93709 0.90155 0.97965 1.20220 0.97609 0.88016 1.01489 1.22668 0.98226 0.98574 0.93070 1.23400 1.01475 0.90971 1.05511 1.47030 1.27444 1.14380 1.20903 1.21593 1.05686 0.77886 0.94619 1.22608 1.01971 0.82397 0.95269 1.87670 1.92462 1.13378 1.36908 1.22158 1.02068 0.83887 0.92070 1.21080 1.07142 0.88438 0.98475 1.23122 0.72451 0.84352 0.87319 1.90780 1.43913 1.86524 1.19061 1.84508 1.83343 1.16954 1.47923 1.78248 1.19196 1.08869 1.01447 1.75122 1.10837 1.02846 1.23306 0.93044 0.96778 0.95462 0.91215 0.91445 0.79544 0.87649 0.86996 0.92086 0.90886 0.91852 0.91683 0.86397 0.86458 0.72644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.58 13.29 55.43 0.74 -26.84 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.03 0.77 4.95 -27.88 -0.14 0.63 16 10 C -0.03 -0.72 5.73 -27.88 -0.16 -0.88 16 11 C 0.01 0.23 6.50 -82.77 -0.54 -0.31 16 12 C -0.06 -0.96 11.49 -17.05 -0.20 -1.16 16 13 N -0.30 -4.25 3.44 -61.26 -0.21 -4.46 16 14 C 0.12 1.12 6.83 -4.04 -0.03 1.09 16 15 C 0.06 0.48 6.06 37.16 0.23 0.70 16 16 O -0.39 -3.00 10.34 -35.23 -0.36 -3.36 16 17 C 0.07 0.51 5.23 37.16 0.19 0.70 16 18 C -0.11 -0.53 6.18 -27.88 -0.17 -0.70 16 19 C 0.49 2.98 8.33 36.00 0.30 3.28 16 20 O -0.51 -5.00 16.74 -18.75 -0.31 -5.32 16 21 O -0.51 -2.10 13.42 -39.25 -0.53 -2.62 16 22 N -0.10 -1.79 12.91 60.35 0.78 -1.01 16 23 N -0.25 -5.42 12.40 33.29 0.41 -5.01 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.01 0.40 8.14 -51.92 -0.42 -0.03 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 28 H 0.07 1.26 8.12 -51.93 -0.42 0.84 16 29 H 0.19 1.97 8.06 -52.49 -0.42 1.54 16 30 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.11 0.70 8.07 -51.93 -0.42 0.28 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 34 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 35 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 36 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.12 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.41 0.11 9.10 45.56 0.41 0.52 16 LS Contribution 340.00 15.07 5.12 5.12 Total: -1.00 -37.41 340.00 -4.92 -42.33 By element: Atomic # 1 Polarization: -0.74 SS G_CDS: -4.61 Total: -5.35 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -0.92 Total: -10.32 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 1.72 Total: -37.32 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -1.21 Total: -11.30 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -37.41 -4.92 -42.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254090125.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.285 kcal (2) G-P(sol) polarization free energy of solvation -37.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds