Wall clock time and date at job start Tue Mar 31 2020 05:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00038 * 2 1 4 4 H 1.48507 * 109.46833 * 269.99940 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.99514 * 3 2 1 6 6 H 1.48492 * 109.47236 * 149.99615 * 3 2 1 7 7 C 1.37876 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00034 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00212 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47126 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46816 * 180.02562 * 10 9 7 12 12 C 1.35353 * 126.75076 * 124.99944 * 11 10 9 13 13 N 1.35309 * 106.17498 * 179.97438 * 12 11 10 14 14 C 1.46499 * 125.87027 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47215 * 124.97307 * 14 13 12 16 16 O 1.42897 * 109.47415 * 180.02562 * 15 14 13 17 17 C 1.42898 * 114.00163 * 180.02562 * 16 15 14 18 18 C 1.53005 * 109.47172 * 179.97438 * 17 16 15 19 19 C 1.50696 * 109.47333 * 180.02562 * 18 17 16 20 20 O 1.20826 * 119.99744 * 359.97438 * 19 18 17 21 21 O 1.34226 * 120.00029 * 180.02562 * 19 18 17 22 22 N 1.28714 * 108.26535 * 359.97438 * 13 12 11 23 23 N 1.28637 * 110.18046 * 0.02562 * 22 13 12 24 24 H 0.96997 * 120.00214 * 0.02562 * 1 2 3 25 25 H 1.09009 * 109.46858 * 59.99942 * 9 7 2 26 26 H 1.09003 * 109.47046 * 300.00339 * 9 7 2 27 27 H 1.08997 * 109.47274 * 60.00636 * 10 9 7 28 28 H 1.09004 * 109.46966 * 299.99799 * 10 9 7 29 29 H 1.08002 * 126.91189 * 359.97438 * 12 11 10 30 30 H 1.08997 * 109.47592 * 244.97299 * 14 13 12 31 31 H 1.09007 * 109.46901 * 4.97623 * 14 13 12 32 32 H 1.09001 * 109.47531 * 300.00255 * 15 14 13 33 33 H 1.09007 * 109.46928 * 60.00332 * 15 14 13 34 34 H 1.08999 * 109.47287 * 299.99832 * 17 16 15 35 35 H 1.09002 * 109.46934 * 60.00275 * 17 16 15 36 36 H 1.08998 * 109.47394 * 300.00548 * 18 17 16 37 37 H 1.09002 * 109.46871 * 59.99825 * 18 17 16 38 38 H 0.96698 * 116.99688 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4918 -4.9672 0.0012 12 6 1.6266 -5.9797 -0.8869 13 7 0.7570 -6.9406 -0.4978 14 6 0.5493 -8.2301 -1.1613 15 6 0.7443 -9.3614 -0.1498 16 8 0.5423 -10.6192 -0.7971 17 6 0.7012 -11.7483 0.0642 18 6 0.4627 -13.0338 -0.7307 19 6 0.6297 -14.2245 0.1777 20 8 0.9112 -14.0617 1.3414 21 8 0.4668 -15.4658 -0.3061 22 7 0.1435 -6.5270 0.5554 23 7 0.5589 -5.3533 0.8788 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5572 -0.8898 26 1 0.6240 -2.5568 0.8903 27 1 2.8713 -3.6040 0.8923 28 1 2.8727 -3.6047 -0.8878 29 1 2.2940 -6.0138 -1.7353 30 1 -0.4628 -8.2729 -1.5636 31 1 1.2681 -8.3408 -1.9733 32 1 1.7564 -9.3187 0.2525 33 1 0.0255 -9.2507 0.6621 34 1 1.7122 -11.7550 0.4716 35 1 -0.0190 -11.6872 0.8801 36 1 -0.5484 -13.0268 -1.1379 37 1 1.1826 -13.0951 -1.5469 38 1 0.5838 -16.1978 0.3148 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254090125.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:41 Heat of formation + Delta-G solvation = -81.000148 kcal Electronic energy + Delta-G solvation = -20556.341646 eV Core-core repulsion = 17013.903000 eV Total energy + Delta-G solvation = -3542.438645 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.18769 -41.32900 -39.29100 -37.20680 -36.57756 -35.51098 -33.80352 -33.10896 -31.15070 -30.25728 -27.16130 -25.90376 -24.98068 -23.66459 -22.74835 -22.01474 -21.20377 -19.26708 -18.56587 -18.41446 -17.88478 -17.71190 -17.36190 -16.69944 -16.48113 -16.40895 -15.72849 -15.58369 -15.17862 -14.89739 -14.63407 -14.14172 -13.99840 -13.59868 -13.29925 -13.14151 -12.84105 -12.61831 -12.58979 -12.47534 -12.39224 -12.28104 -12.06642 -11.81063 -11.75440 -11.33089 -11.20526 -10.97114 -10.80418 -10.51504 -9.96754 -8.14750 -6.27168 0.64632 1.14102 1.23533 1.43555 1.46251 1.56921 1.61639 1.91218 2.45464 2.86527 3.18413 3.42764 3.61195 3.71520 3.84875 3.93630 4.05526 4.16406 4.28987 4.32489 4.36857 4.49192 4.56090 4.67969 4.72473 4.76632 4.80775 5.05019 5.06252 5.35615 5.55161 5.57835 5.68381 5.78081 5.89648 5.90163 6.26111 6.91358 6.92998 7.42282 7.57951 8.97621 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.075572 B = 0.001971 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 370.419491 B =14204.693572 C =14207.767629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.971 3.029 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.540 4.540 8 H 0.071 0.929 9 C 0.037 3.963 10 C -0.019 4.019 11 C -0.030 4.030 12 C -0.028 4.028 13 N -0.286 5.286 14 C 0.117 3.883 15 C 0.060 3.940 16 O -0.381 6.381 17 C 0.071 3.929 18 C -0.108 4.108 19 C 0.491 3.509 20 O -0.558 6.558 21 O -0.510 6.510 22 N -0.120 5.120 23 N -0.310 5.310 24 H 0.262 0.738 25 H -0.015 1.015 26 H -0.018 1.018 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.240 0.760 30 H 0.117 0.883 31 H 0.153 0.847 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.224 -31.218 -7.441 32.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.795 3.205 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.183 1.183 7 C -0.578 4.578 8 H 0.090 0.910 9 C -0.001 4.001 10 C -0.058 4.058 11 C -0.169 4.169 12 C -0.179 4.179 13 N -0.082 5.082 14 C -0.003 4.003 15 C -0.018 4.018 16 O -0.300 6.300 17 C -0.005 4.005 18 C -0.145 4.145 19 C 0.336 3.664 20 O -0.450 6.450 21 O -0.324 6.324 22 N -0.099 5.099 23 N -0.176 5.176 24 H 0.070 0.930 25 H 0.003 0.997 26 H 0.001 0.999 27 H 0.085 0.915 28 H 0.115 0.885 29 H 0.256 0.744 30 H 0.135 0.865 31 H 0.171 0.829 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 2.974 -31.190 -6.534 32.005 hybrid contribution 0.667 0.709 0.319 1.024 sum 3.640 -30.481 -6.215 31.320 Atomic orbital electron populations 1.70156 1.08159 1.27652 1.51866 1.26084 0.95717 1.03729 0.94782 0.85363 0.78590 0.77982 0.78569 1.19431 1.21303 1.18349 1.21742 0.93918 0.91889 1.50262 0.91041 1.18847 0.94121 0.92754 0.94369 1.19910 0.96328 0.86829 1.02731 1.22575 0.99553 0.99571 0.95179 1.23976 1.00246 0.88979 1.04674 1.47413 1.25734 1.15575 1.19497 1.22065 1.07793 0.75419 0.95011 1.22456 1.01504 0.82992 0.94847 1.87656 1.92431 1.13110 1.36754 1.22210 1.01532 0.84549 0.92236 1.21081 1.08693 0.86559 0.98143 1.23369 0.71174 0.85166 0.86722 1.90773 1.46151 1.87140 1.20919 1.84476 1.82666 1.16903 1.48318 1.78142 1.20249 1.08182 1.03332 1.75050 1.12570 1.04546 1.25481 0.92968 0.99703 0.99922 0.91538 0.88506 0.74369 0.86504 0.82899 0.92005 0.92682 0.92307 0.92837 0.84778 0.84409 0.70761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.64 13.29 21.45 0.28 -59.35 16 2 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 3 Si 0.97 44.92 29.54 68.60 2.03 46.94 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.54 -31.24 9.11 25.60 0.23 -31.01 16 8 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 9 C 0.04 2.05 4.95 29.85 0.15 2.19 16 10 C -0.02 -0.79 5.73 29.85 0.17 -0.62 16 11 C -0.03 -1.17 6.50 41.60 0.27 -0.90 16 12 C -0.03 -0.76 11.49 83.49 0.96 0.20 16 13 N -0.29 -7.50 3.44 -347.73 -1.20 -8.70 16 14 C 0.12 1.73 6.83 86.38 0.59 2.32 16 15 C 0.06 0.94 6.06 71.98 0.44 1.37 16 16 O -0.38 -5.08 10.34 -148.98 -1.54 -6.63 16 17 C 0.07 0.88 5.23 71.98 0.38 1.26 16 18 C -0.11 -0.77 6.18 29.85 0.18 -0.58 16 19 C 0.49 5.42 8.33 71.23 0.59 6.01 16 20 O -0.56 -10.78 16.74 21.96 0.37 -10.41 16 21 O -0.51 -3.21 13.42 -51.38 -0.69 -3.90 16 22 N -0.12 -4.40 12.91 37.02 0.48 -3.92 16 23 N -0.31 -13.67 12.40 -48.59 -0.60 -14.27 16 24 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 25 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 26 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 27 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 28 H 0.10 3.42 8.12 -2.39 -0.02 3.40 16 29 H 0.24 3.65 8.06 -2.91 -0.02 3.63 16 30 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.15 1.09 8.07 -2.38 -0.02 1.07 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 1.06 8.12 -2.38 -0.02 1.04 16 34 H 0.06 0.78 8.10 -2.39 -0.02 0.76 16 35 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 36 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.43 -0.44 9.10 -74.06 -0.67 -1.12 16 Total: -1.00 -85.78 340.00 3.95 -81.83 By element: Atomic # 1 Polarization: -2.33 SS G_CDS: 0.40 Total: -1.94 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: 4.42 Total: -19.66 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -1.04 Total: -86.24 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -1.86 Total: -20.94 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -85.78 3.95 -81.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254090125.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.827 kcal (2) G-P(sol) polarization free energy of solvation -85.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds