Wall clock time and date at job start Tue Mar 31 2020 05:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47356 * 2 1 4 4 C 1.52994 * 109.47543 * 239.99543 * 2 1 3 5 5 S 1.81398 * 109.47551 * 178.59196 * 4 2 1 6 6 C 1.76196 * 103.00098 * 180.02562 * 5 4 2 7 7 C 1.38943 * 120.05747 * 359.72403 * 6 5 4 8 8 C 1.38097 * 119.94655 * 179.72274 * 7 6 5 9 9 C 1.38476 * 120.05393 * 0.55647 * 8 7 6 10 10 F 1.35099 * 119.94638 * 179.70204 * 9 8 7 11 11 C 1.38477 * 120.11161 * 359.71665 * 9 8 7 12 12 C 1.38104 * 120.05380 * 0.02562 * 11 9 8 13 13 N 1.46903 * 109.46861 * 119.99457 * 2 1 3 14 14 C 1.46902 * 111.00302 * 225.59970 * 13 2 1 15 15 H 1.09000 * 109.46910 * 325.41362 * 14 13 2 16 16 C 1.53003 * 109.46784 * 85.40480 * 14 13 2 17 17 C 1.50694 * 109.47518 * 205.41114 * 14 13 2 18 18 H 1.08003 * 120.00050 * 359.97438 * 17 14 13 19 19 C 1.37879 * 119.99961 * 180.02562 * 17 14 13 20 20 N 1.31510 * 120.00178 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 119.99742 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.47047 * 89.99356 * 21 19 17 23 23 H 1.48501 * 109.47163 * 209.99495 * 21 19 17 24 24 H 1.48502 * 109.47402 * 329.99495 * 21 19 17 25 25 H 1.08996 * 109.46956 * 175.20621 * 1 2 3 26 26 H 1.09003 * 109.46999 * 295.21163 * 1 2 3 27 27 H 1.09006 * 109.46533 * 55.20870 * 1 2 3 28 28 H 1.09002 * 109.46902 * 298.59026 * 4 2 1 29 29 H 1.09005 * 109.47224 * 58.58751 * 4 2 1 30 30 H 1.08000 * 120.02000 * 359.97438 * 7 6 5 31 31 H 1.08000 * 119.97193 * 180.24950 * 8 7 6 32 32 H 1.08003 * 119.97467 * 179.97438 * 11 9 8 33 33 H 1.08005 * 120.02649 * 179.97438 * 12 11 9 34 34 H 1.00902 * 111.00085 * 101.65004 * 13 2 1 35 35 H 1.09004 * 109.47031 * 185.85261 * 16 14 13 36 36 H 1.08994 * 109.47584 * 305.85541 * 16 14 13 37 37 H 1.09001 * 109.46946 * 65.85904 * 16 14 13 38 38 H 0.97003 * 120.00090 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 16 3.8536 -0.6850 -1.2703 6 6 4.2500 -1.5471 -2.7549 7 6 3.2353 -2.0531 -3.5579 8 6 3.5485 -2.7234 -4.7240 9 6 4.8728 -2.9015 -5.0873 10 9 5.1768 -3.5628 -6.2255 11 6 5.8861 -2.4030 -4.2859 12 6 5.5780 -1.7273 -3.1215 13 7 2.0196 -0.6924 1.1995 14 6 3.0998 0.0679 1.8423 15 1 3.6967 0.5672 1.0791 16 6 2.4975 1.1133 2.7833 17 6 3.9758 -0.8718 2.6301 18 1 3.7522 -1.9282 2.6515 19 6 5.0620 -0.3828 3.3243 20 7 5.3339 0.9036 3.2987 21 14 6.1474 -1.5476 4.3013 22 1 7.2424 -2.0495 3.4328 23 1 6.7276 -0.8266 5.4627 24 1 5.3350 -2.6927 4.7852 25 1 -0.3633 -1.0240 -0.0859 26 1 -0.3633 0.4378 0.9298 27 1 -0.3632 0.5864 -0.8440 28 1 1.6976 -1.7560 -1.2365 29 1 1.6563 -0.2224 -2.1390 30 1 2.2025 -1.9187 -3.2724 31 1 2.7599 -3.1134 -5.3505 32 1 6.9183 -2.5435 -4.5712 33 1 6.3687 -1.3391 -2.4965 34 1 2.3195 -1.6302 0.9787 35 1 3.2919 1.7453 3.1805 36 1 1.7842 1.7282 2.2345 37 1 1.9874 0.6112 3.6054 38 1 6.0984 1.2476 3.7868 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255735713.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:08 Heat of formation + Delta-G solvation = -27.591099 kcal Electronic energy + Delta-G solvation = -19591.464580 eV Core-core repulsion = 16474.174835 eV Total energy + Delta-G solvation = -3117.289746 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.94147 -38.80331 -36.99378 -33.50731 -31.40015 -30.85555 -30.47725 -27.32027 -27.02423 -25.06877 -23.07885 -22.79403 -20.75765 -19.79906 -17.96985 -17.26702 -16.49120 -16.22860 -15.65456 -15.25077 -14.97135 -14.63456 -14.36734 -14.05081 -13.61075 -13.35039 -13.08805 -13.02827 -12.72076 -12.39135 -12.32355 -11.71391 -11.47378 -11.21006 -11.07854 -10.90874 -10.72192 -10.58934 -10.40100 -10.12468 -9.93081 -9.69330 -9.50862 -9.25787 -8.77839 -8.44985 -7.36911 -7.10338 -5.98674 -4.02983 0.96807 1.11314 1.68740 2.63486 3.32225 3.38873 3.42492 3.42926 4.18878 4.43579 4.60082 4.73261 4.91967 4.94152 5.09044 5.25872 5.34019 5.40884 5.53695 5.62007 5.75523 5.79395 5.86244 6.00136 6.07845 6.15394 6.16816 6.34647 6.54474 6.72756 6.88335 7.14343 7.23040 7.51159 7.81924 7.90437 8.25211 8.37260 8.65898 9.04890 9.61862 11.08272 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.016355 B = 0.004827 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.635499 B = 5799.830336 C = 7121.559264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.097 3.903 3 H 0.075 0.925 4 C -0.141 4.141 5 S -0.048 6.048 6 C -0.101 4.101 7 C -0.113 4.113 8 C -0.133 4.133 9 C 0.077 3.923 10 F -0.144 7.144 11 C -0.133 4.133 12 C -0.076 4.076 13 N -0.683 5.683 14 C 0.213 3.787 15 H 0.012 0.988 16 C -0.124 4.124 17 C -0.511 4.511 18 H 0.058 0.942 19 C 0.064 3.936 20 N -0.890 5.890 21 Si 0.892 3.108 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.274 1.274 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.045 0.955 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.335 0.665 35 H 0.077 0.923 36 H 0.003 0.997 37 H 0.031 0.969 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.246 -3.864 -14.456 15.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.016 4.016 3 H 0.093 0.907 4 C -0.291 4.291 5 S 0.201 5.799 6 C -0.214 4.214 7 C -0.138 4.138 8 C -0.153 4.153 9 C 0.054 3.946 10 F -0.123 7.123 11 C -0.153 4.153 12 C -0.100 4.100 13 N -0.314 5.314 14 C 0.105 3.895 15 H 0.029 0.971 16 C -0.182 4.182 17 C -0.549 4.549 18 H 0.076 0.924 19 C -0.137 4.137 20 N -0.529 5.529 21 Si 0.720 3.280 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.095 0.905 36 H 0.022 0.978 37 H 0.051 0.949 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.918 -2.924 -13.057 13.942 hybrid contribution 0.624 -1.499 -1.284 2.070 sum -3.295 -4.424 -14.340 15.364 Atomic orbital electron populations 1.21762 0.94415 1.01281 1.01387 1.21466 0.95449 0.98006 0.86653 0.90734 1.24703 0.95018 1.05046 1.04355 1.87002 1.05523 1.66905 1.20516 1.22399 0.96494 1.02132 1.00370 1.21051 0.98897 0.99371 0.94487 1.20991 0.94864 1.01345 0.98149 1.17627 0.93762 0.98451 0.84741 1.91475 1.93999 1.78679 1.48162 1.21062 0.99158 0.99936 0.95167 1.20686 0.95005 0.98317 0.95982 1.60842 1.41773 1.05767 1.23043 1.19210 0.85914 0.91933 0.92395 0.97073 1.21743 0.98921 0.98697 0.98881 1.21172 1.09900 0.93816 1.30045 0.92384 1.24854 0.97377 0.95012 0.96498 1.69900 1.28246 1.12008 1.42751 0.86597 0.80732 0.80986 0.79669 1.20792 1.21343 1.19942 0.92971 0.91514 0.93560 0.89447 0.89779 0.85049 0.84832 0.84506 0.84346 0.84598 0.90454 0.97759 0.94931 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 9.52 37.16 0.35 -1.38 16 2 C 0.10 1.57 2.57 -67.71 -0.17 1.40 16 3 H 0.07 1.34 7.24 -51.93 -0.38 0.97 16 4 C -0.14 -1.97 3.61 37.15 0.13 -1.83 16 5 S -0.05 -0.79 19.80 -107.50 -2.13 -2.92 16 6 C -0.10 -1.43 6.11 -39.06 -0.24 -1.67 16 7 C -0.11 -1.40 9.36 -39.37 -0.37 -1.76 16 8 C -0.13 -1.53 10.02 -39.55 -0.40 -1.92 16 9 C 0.08 0.94 7.30 -39.41 -0.29 0.65 16 10 F -0.14 -1.79 17.26 2.25 0.04 -1.75 16 11 C -0.13 -1.59 10.02 -39.54 -0.40 -1.98 16 12 C -0.08 -1.01 9.79 -39.37 -0.39 -1.40 16 13 N -0.68 -13.63 5.93 -100.95 -0.60 -14.23 16 14 C 0.21 5.13 1.96 -68.86 -0.13 4.99 16 15 H 0.01 0.30 6.42 -51.93 -0.33 -0.03 16 16 C -0.12 -3.01 9.12 37.16 0.34 -2.67 16 17 C -0.51 -13.60 8.59 -34.44 -0.30 -13.90 16 18 H 0.06 1.55 7.61 -52.48 -0.40 1.15 16 19 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 20 N -0.89 -25.06 11.38 55.43 0.63 -24.43 16 21 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 1.13 7.72 -51.92 -0.40 0.73 16 29 H 0.08 1.00 7.76 -51.92 -0.40 0.59 16 30 H 0.13 1.40 5.88 -52.49 -0.31 1.10 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.14 1.79 8.06 -52.48 -0.42 1.36 16 34 H 0.34 6.70 7.49 -39.29 -0.29 6.41 16 35 H 0.08 2.05 6.25 -51.93 -0.32 1.73 16 36 H 0.00 0.08 7.81 -51.93 -0.41 -0.33 16 37 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 327.72 15.07 4.94 4.94 Total: -1.00 -28.07 327.72 -9.42 -37.50 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.34 Total: 4.55 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -1.95 Total: -19.83 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.03 Total: -38.66 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -2.13 Total: -2.92 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.07 -9.42 -37.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255735713.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.905 kcal (2) G-P(sol) polarization free energy of solvation -28.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds