Wall clock time and date at job start Tue Mar 31 2020 05:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46842 * 2 1 4 4 C 1.50703 * 109.46868 * 240.00418 * 2 1 3 5 5 C 1.38228 * 119.98550 * 264.72162 * 4 2 1 6 6 C 1.38191 * 120.04869 * 179.72461 * 5 4 2 7 7 C 1.38488 * 120.02603 * 0.55586 * 6 5 4 8 8 F 1.35095 * 120.01728 * 179.74631 * 7 6 5 9 9 C 1.38398 * 119.97421 * 359.71992 * 7 6 5 10 10 C 1.38441 * 119.95125 * 0.02562 * 9 7 6 11 11 F 1.35097 * 120.01572 * 179.97438 * 10 9 7 12 12 N 1.46892 * 109.47149 * 120.00455 * 2 1 3 13 13 C 1.47966 * 111.00160 * 189.84912 * 12 2 1 14 14 C 1.53936 * 86.18325 * 137.57929 * 13 12 2 15 15 O 1.42897 * 113.73269 * 90.63663 * 14 13 12 16 16 C 1.50689 * 113.73408 * 221.92330 * 14 13 12 17 17 H 1.08001 * 120.00369 * 359.97438 * 16 14 13 18 18 C 1.37884 * 120.00334 * 180.02562 * 16 14 13 19 19 N 1.31517 * 119.99507 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00419 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46974 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46824 * 119.99830 * 20 18 16 23 23 H 1.48499 * 109.47177 * 240.00010 * 20 18 16 24 24 C 1.47957 * 110.99980 * 289.20748 * 12 2 1 25 25 H 1.09000 * 109.46795 * 305.29866 * 1 2 3 26 26 H 1.09002 * 109.46782 * 65.30169 * 1 2 3 27 27 H 1.08996 * 109.46646 * 185.30195 * 1 2 3 28 28 H 1.07995 * 119.97556 * 359.97438 * 5 4 2 29 29 H 1.08005 * 119.98629 * 180.25510 * 6 5 4 30 30 H 1.08001 * 120.02652 * 180.02562 * 9 7 6 31 31 H 1.09001 * 113.75206 * 23.26001 * 13 12 2 32 32 H 1.08994 * 113.75922 * 251.90282 * 13 12 2 33 33 H 0.96696 * 114.00480 * 179.97438 * 15 14 13 34 34 H 0.96993 * 119.99723 * 179.97438 * 19 18 16 35 35 H 1.08999 * 113.76507 * 108.10334 * 24 12 2 36 36 H 1.09000 * 113.76290 * 336.73517 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 6 2.3664 -2.0501 -1.1668 6 6 2.8218 -2.7042 -2.2958 7 6 2.9547 -2.0151 -3.4897 8 9 3.4047 -2.6534 -4.5920 9 6 2.6260 -0.6722 -3.5532 10 6 2.1649 -0.0192 -2.4229 11 9 1.8441 1.2917 -2.4834 12 7 2.0197 -0.6926 1.1993 13 6 3.4797 -0.5111 1.3576 14 6 3.1868 -0.2952 2.8533 15 8 3.2282 -1.4961 3.6267 16 6 3.9771 0.8300 3.4698 17 1 4.6707 1.3968 2.8663 18 6 3.8157 1.1355 4.8047 19 7 2.9715 0.4450 5.5397 20 14 4.7959 2.5298 5.5691 21 1 5.6687 3.1451 4.5371 22 1 3.8639 3.5550 6.1036 23 1 5.6337 1.9983 6.6739 24 6 1.7680 0.1113 2.4157 25 1 -0.3633 0.5938 0.8387 26 1 -0.3633 0.4294 -0.9337 27 1 -0.3632 -1.0233 0.0950 28 1 2.2677 -2.5871 -0.2351 29 1 3.0786 -3.7521 -2.2459 30 1 2.7290 -0.1341 -4.4840 31 1 3.8692 0.3737 0.8541 32 1 4.0591 -1.4103 1.1488 33 1 3.0452 -1.3649 4.5670 34 1 2.8581 0.6596 6.4788 35 1 0.9800 -0.2906 3.0526 36 1 1.6570 1.1782 2.2219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307710113.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:46 Heat of formation + Delta-G solvation = -78.558943 kcal Electronic energy + Delta-G solvation = -22439.880966 eV Core-core repulsion = 18754.167913 eV Total energy + Delta-G solvation = -3685.713053 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.04023 -48.97134 -39.78045 -38.29487 -34.86775 -32.45195 -32.03821 -30.83018 -29.11822 -26.98105 -25.17176 -24.29577 -23.40342 -22.54205 -20.22570 -18.68775 -18.20925 -17.36854 -17.08629 -16.06584 -15.92193 -15.60195 -15.31265 -15.12752 -15.01794 -14.45859 -14.13829 -13.99027 -13.68310 -13.29387 -12.83784 -12.55749 -12.31830 -11.99401 -11.95466 -11.58916 -11.48325 -11.37711 -11.24593 -10.99296 -10.67616 -10.58370 -10.36563 -10.06621 -9.33149 -9.04535 -8.68193 -8.57434 -8.26830 -7.89954 -6.30022 -4.39824 0.95222 1.03984 3.16364 3.25620 3.29543 3.38852 3.85211 4.22387 4.39059 4.47775 4.65772 4.78410 4.88425 4.95049 5.21625 5.46013 5.51164 5.67683 5.74055 5.86626 5.93347 5.95742 6.08112 6.10750 6.13913 6.26833 6.33077 6.44484 6.48290 6.64503 6.78774 6.98608 7.09440 7.32159 7.73024 7.88581 7.95992 8.62544 9.30735 9.61525 10.75661 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.025582 B = 0.004373 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.242045 B = 6401.298735 C = 6535.463592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.083 3.917 3 H 0.057 0.943 4 C -0.109 4.109 5 C -0.036 4.036 6 C -0.166 4.166 7 C 0.117 3.883 8 F -0.137 7.137 9 C -0.197 4.197 10 C 0.127 3.873 11 F -0.131 7.131 12 N -0.472 5.472 13 C 0.009 3.991 14 C 0.245 3.755 15 O -0.572 6.572 16 C -0.537 4.537 17 H 0.065 0.935 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.902 3.098 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.281 1.281 24 C -0.009 4.009 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.158 0.842 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.390 0.610 34 H 0.271 0.729 35 H 0.074 0.926 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.121 -2.511 -13.258 13.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.027 4.027 3 H 0.075 0.925 4 C -0.110 4.110 5 C -0.054 4.054 6 C -0.185 4.185 7 C 0.098 3.902 8 F -0.116 7.116 9 C -0.216 4.216 10 C 0.107 3.893 11 F -0.110 7.110 12 N -0.195 5.195 13 C -0.119 4.119 14 C 0.204 3.796 15 O -0.384 6.384 16 C -0.576 4.576 17 H 0.084 0.916 18 C -0.130 4.130 19 N -0.538 5.538 20 Si 0.729 3.271 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.206 1.206 24 C -0.138 4.138 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.176 0.824 29 H 0.158 0.842 30 H 0.161 0.839 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.245 0.755 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.345 -3.408 -13.758 14.563 hybrid contribution 0.635 2.106 0.593 2.278 sum -2.710 -1.302 -13.165 13.504 Atomic orbital electron populations 1.21710 0.93327 1.02684 1.01417 1.21063 0.96168 0.95785 0.89641 0.92474 1.20084 1.01753 0.95192 0.93976 1.21031 0.92938 0.92874 0.98543 1.21282 1.04097 1.01512 0.91560 1.17299 0.99330 0.90149 0.83412 1.91501 1.86673 1.81696 1.51710 1.20887 1.06847 0.94336 0.99568 1.17185 0.99952 0.78408 0.93761 1.91506 1.90202 1.32345 1.96921 1.68597 1.07705 1.42882 1.00354 1.24150 0.89424 0.99883 0.98469 1.19725 0.89427 0.83789 0.86692 1.86026 1.93807 1.32382 1.26209 1.21690 1.24686 1.15756 0.95426 0.91647 1.25049 0.94464 0.96559 0.96956 1.69344 1.35571 1.40870 1.08051 0.86376 0.79920 0.81548 0.79227 1.19604 1.20751 1.20637 1.24687 1.03184 0.95345 0.90601 0.91909 0.92865 0.91698 0.82414 0.84155 0.83856 0.91875 0.90657 0.75529 0.91909 0.90712 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 9.17 37.16 0.34 -1.61 16 2 C 0.08 1.36 1.64 -68.86 -0.11 1.25 16 3 H 0.06 1.01 7.34 -51.93 -0.38 0.63 16 4 C -0.11 -1.62 4.61 -104.54 -0.48 -2.10 16 5 C -0.04 -0.50 8.86 -39.60 -0.35 -0.85 16 6 C -0.17 -2.01 10.02 -39.51 -0.40 -2.41 16 7 C 0.12 1.46 7.30 -39.43 -0.29 1.17 16 8 F -0.14 -1.69 17.27 2.25 0.04 -1.65 16 9 C -0.20 -2.44 10.01 -39.45 -0.39 -2.83 16 10 C 0.13 1.78 7.24 -39.43 -0.29 1.49 16 11 F -0.13 -1.91 16.57 2.25 0.04 -1.87 16 12 N -0.47 -9.08 4.82 -231.61 -1.12 -10.20 16 13 C 0.01 0.20 6.39 -2.76 -0.02 0.18 16 14 C 0.25 5.97 1.44 -90.84 -0.13 5.84 16 15 O -0.57 -14.89 13.49 -35.23 -0.48 -15.37 16 16 C -0.54 -14.02 8.62 -34.44 -0.30 -14.32 16 17 H 0.07 1.70 7.81 -52.49 -0.41 1.28 16 18 C 0.07 1.85 5.39 -17.82 -0.10 1.75 16 19 N -0.90 -23.50 11.08 55.43 0.61 -22.88 16 20 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 C -0.01 -0.21 6.59 -2.77 -0.02 -0.22 16 25 H 0.06 0.93 7.70 -51.93 -0.40 0.53 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.16 2.31 7.25 -52.49 -0.38 1.93 16 29 H 0.14 1.40 8.06 -52.48 -0.42 0.98 16 30 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.06 1.30 7.74 -51.93 -0.40 0.89 16 32 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 33 H 0.39 10.38 6.42 45.56 0.29 10.67 16 34 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 35 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 36 H 0.06 1.32 7.73 -51.93 -0.40 0.92 16 LS Contribution 310.37 15.07 4.68 4.68 Total: -1.00 -26.19 310.37 -7.53 -33.72 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -3.75 Total: 11.16 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -2.53 Total: -12.66 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: -0.50 Total: -33.08 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.48 Total: -15.37 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.08 Total: -3.52 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -26.19 -7.53 -33.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307710113.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.843 kcal (2) G-P(sol) polarization free energy of solvation -26.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds