Wall clock time and date at job start Tue Mar 31 2020 05:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46842 * 2 1 4 4 C 1.50703 * 109.46868 * 240.00418 * 2 1 3 5 5 C 1.38228 * 119.98550 * 264.72162 * 4 2 1 6 6 C 1.38191 * 120.04869 * 179.72461 * 5 4 2 7 7 C 1.38488 * 120.02603 * 0.55586 * 6 5 4 8 8 F 1.35095 * 120.01728 * 179.74631 * 7 6 5 9 9 C 1.38398 * 119.97421 * 359.71992 * 7 6 5 10 10 C 1.38441 * 119.95125 * 0.02562 * 9 7 6 11 11 F 1.35097 * 120.01572 * 179.97438 * 10 9 7 12 12 N 1.46892 * 109.47149 * 120.00455 * 2 1 3 13 13 C 1.47966 * 111.00160 * 189.84912 * 12 2 1 14 14 C 1.53936 * 86.18325 * 137.57929 * 13 12 2 15 15 O 1.42897 * 113.73269 * 90.63663 * 14 13 12 16 16 C 1.50689 * 113.73408 * 221.92330 * 14 13 12 17 17 H 1.08001 * 120.00369 * 359.97438 * 16 14 13 18 18 C 1.37884 * 120.00334 * 180.02562 * 16 14 13 19 19 N 1.31517 * 119.99507 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00419 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46974 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46824 * 119.99830 * 20 18 16 23 23 H 1.48499 * 109.47177 * 240.00010 * 20 18 16 24 24 C 1.47957 * 110.99980 * 289.20748 * 12 2 1 25 25 H 1.09000 * 109.46795 * 305.29866 * 1 2 3 26 26 H 1.09002 * 109.46782 * 65.30169 * 1 2 3 27 27 H 1.08996 * 109.46646 * 185.30195 * 1 2 3 28 28 H 1.07995 * 119.97556 * 359.97438 * 5 4 2 29 29 H 1.08005 * 119.98629 * 180.25510 * 6 5 4 30 30 H 1.08001 * 120.02652 * 180.02562 * 9 7 6 31 31 H 1.09001 * 113.75206 * 23.26001 * 13 12 2 32 32 H 1.08994 * 113.75922 * 251.90282 * 13 12 2 33 33 H 0.96696 * 114.00480 * 179.97438 * 15 14 13 34 34 H 0.96993 * 119.99723 * 179.97438 * 19 18 16 35 35 H 1.08999 * 113.76507 * 108.10334 * 24 12 2 36 36 H 1.09000 * 113.76290 * 336.73517 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 6 2.3664 -2.0501 -1.1668 6 6 2.8218 -2.7042 -2.2958 7 6 2.9547 -2.0151 -3.4897 8 9 3.4047 -2.6534 -4.5920 9 6 2.6260 -0.6722 -3.5532 10 6 2.1649 -0.0192 -2.4229 11 9 1.8441 1.2917 -2.4834 12 7 2.0197 -0.6926 1.1993 13 6 3.4797 -0.5111 1.3576 14 6 3.1868 -0.2952 2.8533 15 8 3.2282 -1.4961 3.6267 16 6 3.9771 0.8300 3.4698 17 1 4.6707 1.3968 2.8663 18 6 3.8157 1.1355 4.8047 19 7 2.9715 0.4450 5.5397 20 14 4.7959 2.5298 5.5691 21 1 5.6687 3.1451 4.5371 22 1 3.8639 3.5550 6.1036 23 1 5.6337 1.9983 6.6739 24 6 1.7680 0.1113 2.4157 25 1 -0.3633 0.5938 0.8387 26 1 -0.3633 0.4294 -0.9337 27 1 -0.3632 -1.0233 0.0950 28 1 2.2677 -2.5871 -0.2351 29 1 3.0786 -3.7521 -2.2459 30 1 2.7290 -0.1341 -4.4840 31 1 3.8692 0.3737 0.8541 32 1 4.0591 -1.4103 1.1488 33 1 3.0452 -1.3649 4.5670 34 1 2.8581 0.6596 6.4788 35 1 0.9800 -0.2906 3.0526 36 1 1.6570 1.1782 2.2219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307710113.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:46 Heat of formation + Delta-G solvation = -94.569058 kcal Electronic energy + Delta-G solvation = -22440.575217 eV Core-core repulsion = 18754.167913 eV Total energy + Delta-G solvation = -3686.407304 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.06782 -50.01006 -41.26107 -39.58245 -36.57375 -34.15451 -33.82529 -31.85372 -30.28760 -28.77850 -26.84682 -25.94395 -24.52306 -23.72214 -21.58826 -20.47671 -19.30008 -19.15512 -18.23494 -17.29715 -17.10239 -16.97500 -16.75693 -16.55262 -16.34393 -15.76178 -15.49890 -15.37041 -15.16813 -14.79090 -14.13688 -13.94114 -13.66592 -13.50459 -13.37344 -13.24787 -12.99296 -12.83658 -12.64795 -12.39065 -12.27865 -12.21896 -12.07564 -11.80377 -11.14431 -10.63169 -10.13752 -10.04248 -9.69634 -9.56588 -8.25177 -6.42648 -0.09669 0.01839 1.39795 1.43722 1.54016 2.34343 2.36834 2.81917 2.93985 3.03778 3.37522 3.49524 3.65111 3.88843 3.98249 4.08547 4.17846 4.28165 4.32341 4.42692 4.58544 4.67188 4.78664 4.84979 4.88188 4.95422 4.96328 5.09208 5.15163 5.18983 5.31360 5.43688 5.48398 5.75588 5.76380 5.98679 6.27468 6.62383 7.30663 7.55791 8.79383 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.025582 B = 0.004373 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.242045 B = 6401.298735 C = 6535.463592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.083 3.917 3 H 0.045 0.955 4 C -0.121 4.121 5 C -0.043 4.043 6 C -0.154 4.154 7 C 0.119 3.881 8 F -0.134 7.134 9 C -0.188 4.188 10 C 0.118 3.882 11 F -0.137 7.137 12 N -0.461 5.461 13 C 0.022 3.978 14 C 0.219 3.781 15 O -0.582 6.582 16 C -0.561 4.561 17 H 0.060 0.940 18 C 0.031 3.969 19 N -0.916 5.916 20 Si 0.963 3.037 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.277 1.277 24 C 0.002 3.998 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.149 0.851 29 H 0.164 0.836 30 H 0.165 0.835 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.383 0.617 34 H 0.274 0.726 35 H 0.062 0.938 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.891 -2.489 -14.670 15.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.026 4.026 3 H 0.063 0.937 4 C -0.122 4.122 5 C -0.061 4.061 6 C -0.173 4.173 7 C 0.100 3.900 8 F -0.112 7.112 9 C -0.207 4.207 10 C 0.098 3.902 11 F -0.115 7.115 12 N -0.184 5.184 13 C -0.107 4.107 14 C 0.178 3.822 15 O -0.393 6.393 16 C -0.599 4.599 17 H 0.078 0.922 18 C -0.169 4.169 19 N -0.557 5.557 20 Si 0.788 3.212 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.203 1.203 24 C -0.128 4.128 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.166 0.834 29 H 0.181 0.819 30 H 0.183 0.817 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.237 0.763 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.119 -3.393 -15.189 15.873 hybrid contribution 0.567 2.054 0.971 2.342 sum -2.552 -1.338 -14.218 14.507 Atomic orbital electron populations 1.21679 0.91893 1.02934 1.02119 1.21048 0.97371 0.95014 0.89156 0.93728 1.19954 1.03051 0.95682 0.93562 1.20942 0.93792 0.92513 0.98895 1.21457 1.02593 1.02524 0.90738 1.17331 0.99024 0.90171 0.83509 1.91518 1.86576 1.81615 1.51526 1.21068 1.05418 0.94410 0.99800 1.17216 1.00719 0.78270 0.93977 1.91493 1.90366 1.32711 1.96949 1.68520 1.06603 1.42604 1.00701 1.23993 0.90543 1.00067 0.96057 1.20083 0.90908 0.83151 0.88046 1.86009 1.94001 1.33428 1.25910 1.21933 1.25263 1.16583 0.96114 0.92199 1.25739 0.95272 0.98622 0.97290 1.69412 1.36220 1.41760 1.08341 0.85434 0.78599 0.78894 0.78252 1.19501 1.20252 1.20302 1.24410 1.01347 0.95267 0.91729 0.92487 0.91115 0.91401 0.83362 0.81850 0.81725 0.91691 0.90275 0.76277 0.91598 0.91991 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 9.17 71.98 0.66 -2.98 16 2 C 0.08 2.70 1.64 44.17 0.07 2.77 16 3 H 0.04 1.57 7.34 -2.39 -0.02 1.55 16 4 C -0.12 -3.45 4.61 -19.81 -0.09 -3.54 16 5 C -0.04 -1.13 8.86 22.26 0.20 -0.94 16 6 C -0.15 -3.36 10.02 22.32 0.22 -3.14 16 7 C 0.12 2.62 7.30 22.37 0.16 2.78 16 8 F -0.13 -2.89 17.27 44.97 0.78 -2.11 16 9 C -0.19 -4.16 10.01 22.36 0.22 -3.93 16 10 C 0.12 3.10 7.24 22.37 0.16 3.26 16 11 F -0.14 -3.78 16.57 44.97 0.74 -3.03 16 12 N -0.46 -17.71 4.82 -889.85 -4.29 -22.00 16 13 C 0.02 0.92 6.39 86.40 0.55 1.48 16 14 C 0.22 10.81 1.44 -10.90 -0.02 10.79 16 15 O -0.58 -30.83 13.49 -148.98 -2.01 -32.84 16 16 C -0.56 -29.56 8.62 25.60 0.22 -29.34 16 17 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 18 C 0.03 1.59 5.39 84.66 0.46 2.05 16 19 N -0.92 -48.35 11.08 21.45 0.24 -48.11 16 20 Si 0.96 41.15 29.54 68.60 2.03 43.18 16 21 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 23 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 24 C 0.00 0.08 6.59 86.41 0.57 0.65 16 25 H 0.06 1.66 7.70 -2.39 -0.02 1.64 16 26 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.15 4.19 7.25 -2.91 -0.02 4.17 16 29 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 30 H 0.17 2.90 8.06 -2.91 -0.02 2.87 16 31 H 0.06 2.67 7.74 -2.39 -0.02 2.65 16 32 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.38 20.91 6.42 -74.06 -0.48 20.44 16 34 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 35 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.06 2.51 7.73 -2.39 -0.02 2.49 16 Total: -1.00 -54.87 310.37 1.51 -53.36 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 0.63 Total: 31.66 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 3.39 Total: -20.10 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: -4.06 Total: -70.12 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -2.01 Total: -32.84 kcal Atomic # 9 Polarization: -6.66 SS G_CDS: 1.52 Total: -5.14 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -54.87 1.51 -53.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307710113.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.211 kcal (2) G-P(sol) polarization free energy of solvation -54.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds