Wall clock time and date at job start Tue Mar 31 2020 05:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46785 * 2 1 4 4 C 1.50696 * 109.47192 * 239.99774 * 2 1 3 5 5 O 1.21279 * 120.00750 * 239.99898 * 4 2 1 6 6 N 1.34778 * 119.99888 * 59.99823 * 4 2 1 7 7 C 1.46493 * 120.00131 * 0.02562 * 6 4 2 8 8 C 1.46506 * 120.00058 * 179.97438 * 6 4 2 9 9 C 1.50703 * 109.47289 * 270.00143 * 8 6 4 10 10 H 1.07994 * 119.99399 * 0.02562 * 9 8 6 11 11 C 1.37874 * 119.99789 * 179.97438 * 9 8 6 12 12 N 1.31518 * 120.00144 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99733 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46762 * 60.00562 * 13 11 9 15 15 H 1.48506 * 109.46725 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47116 * 300.00217 * 13 11 9 17 17 C 1.50702 * 109.47495 * 119.99936 * 2 1 3 18 18 C 1.38227 * 119.98466 * 59.72242 * 17 2 1 19 19 C 1.38193 * 120.04881 * 179.77464 * 18 17 2 20 20 C 1.38500 * 120.02235 * 0.50313 * 19 18 17 21 21 F 1.35096 * 120.01178 * 179.77295 * 20 19 18 22 22 C 1.38395 * 119.97441 * 359.75460 * 20 19 18 23 23 C 1.38441 * 119.95223 * 359.97438 * 22 20 19 24 24 F 1.35096 * 120.01290 * 180.02562 * 23 22 20 25 25 H 1.09002 * 109.47171 * 299.99980 * 1 2 3 26 26 H 1.08993 * 109.47617 * 60.00294 * 1 2 3 27 27 H 1.09005 * 109.46633 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47498 * 269.99982 * 7 6 4 29 29 H 1.09006 * 109.47571 * 29.99644 * 7 6 4 30 30 H 1.09005 * 109.47727 * 150.00102 * 7 6 4 31 31 H 1.09001 * 109.47060 * 30.00593 * 8 6 4 32 32 H 1.09004 * 109.47073 * 150.00082 * 8 6 4 33 33 H 0.96997 * 119.99752 * 179.97438 * 12 11 9 34 34 H 1.07995 * 119.97839 * 0.02562 * 18 17 2 35 35 H 1.07999 * 119.99107 * 180.25940 * 19 18 17 36 36 H 1.08004 * 120.02578 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2500 -2.4545 7 6 0.8649 0.9413 -2.5890 8 6 2.1955 -0.9403 -3.6507 9 6 3.5229 -0.3563 -4.0607 10 1 3.9589 0.4483 -3.4873 11 6 4.1810 -0.8498 -5.1671 12 7 3.6501 -1.8300 -5.8651 13 14 5.8260 -0.1254 -5.6757 14 1 6.8041 -0.2949 -4.5713 15 1 6.3214 -0.8253 -6.8881 16 1 5.6597 1.3201 -5.9723 17 6 2.0324 -0.7104 1.2305 18 6 1.6936 -2.0321 1.4518 19 6 2.1574 -2.6862 2.5773 20 6 2.9538 -2.0148 3.4902 21 9 3.4034 -2.6531 4.5927 22 6 3.2893 -0.6899 3.2722 23 6 2.8286 -0.0373 2.1414 24 9 3.1557 1.2558 1.9272 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.1833 0.6439 -2.6221 29 1 1.0287 1.6002 -1.7362 30 1 1.1227 1.4666 -3.5087 31 1 2.3169 -2.0016 -3.4337 32 1 1.4776 -0.8152 -4.4613 33 1 4.1130 -2.1770 -6.6437 34 1 1.0693 -2.5552 0.7427 35 1 1.8956 -3.7201 2.7472 36 1 3.9106 -0.1657 3.9833 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319083501.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:40 Heat of formation + Delta-G solvation = -117.825866 kcal Electronic energy + Delta-G solvation = -22229.960752 eV Core-core repulsion = 18542.544957 eV Total energy + Delta-G solvation = -3687.415795 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.09455 -50.02954 -41.27285 -39.52672 -36.62071 -35.40495 -34.42480 -31.83673 -30.56643 -29.26328 -27.58871 -25.87313 -24.81519 -24.08180 -22.62778 -20.02369 -19.31405 -18.73031 -18.47279 -17.47874 -17.44885 -16.97801 -16.71506 -16.56890 -16.34663 -16.29679 -15.64767 -15.46258 -15.05413 -14.58441 -14.47650 -14.16894 -13.85869 -13.58341 -13.41546 -13.33984 -12.97114 -12.91928 -12.75964 -12.70075 -12.47009 -12.22140 -12.20764 -11.98221 -11.70020 -10.64509 -10.54187 -10.06379 -9.65494 -9.40514 -8.22924 -6.37437 -0.11794 0.01079 1.35670 1.39460 1.46732 1.81227 2.18146 2.36197 2.54251 2.81842 3.06697 3.29906 3.44229 3.52561 3.74925 3.91289 4.06728 4.18154 4.28277 4.42155 4.65244 4.70706 4.78974 4.84921 4.86805 4.89935 5.00237 5.01538 5.04668 5.21058 5.27566 5.32499 5.55510 5.73068 5.83802 6.06217 6.68980 6.77932 7.27536 7.46247 8.83626 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.019785 B = 0.004585 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.850944 B = 6105.108064 C = 6493.050437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.064 4.064 3 H 0.114 0.886 4 C 0.502 3.498 5 O -0.586 6.586 6 N -0.606 5.606 7 C 0.073 3.927 8 C 0.260 3.740 9 C -0.545 4.545 10 H 0.050 0.950 11 C 0.010 3.990 12 N -0.926 5.926 13 Si 0.963 3.037 14 H -0.281 1.281 15 H -0.277 1.277 16 H -0.260 1.260 17 C -0.114 4.114 18 C -0.037 4.037 19 C -0.158 4.158 20 C 0.119 3.881 21 F -0.134 7.134 22 C -0.191 4.191 23 C 0.120 3.880 24 F -0.134 7.134 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.000 1.000 32 H 0.026 0.974 33 H 0.267 0.733 34 H 0.141 0.859 35 H 0.163 0.837 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.439 5.306 17.013 19.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.085 4.085 3 H 0.132 0.868 4 C 0.290 3.710 5 O -0.467 6.467 6 N -0.337 5.337 7 C -0.069 4.069 8 C 0.139 3.861 9 C -0.583 4.583 10 H 0.068 0.932 11 C -0.189 4.189 12 N -0.566 5.566 13 Si 0.788 3.212 14 H -0.206 1.206 15 H -0.202 1.202 16 H -0.185 1.185 17 C -0.116 4.116 18 C -0.055 4.055 19 C -0.177 4.177 20 C 0.100 3.900 21 F -0.112 7.112 22 C -0.210 4.210 23 C 0.101 3.899 24 F -0.112 7.112 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.019 0.981 32 H 0.044 0.956 33 H 0.076 0.924 34 H 0.159 0.841 35 H 0.181 0.819 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -8.049 4.731 16.909 19.316 hybrid contribution 1.324 0.128 -0.558 1.442 sum -6.725 4.859 16.352 18.336 Atomic orbital electron populations 1.22077 0.88914 1.03895 1.05351 1.20215 1.00271 0.99937 0.88108 0.86811 1.20988 0.80082 0.84644 0.85236 1.90650 1.39903 1.29152 1.86968 1.48095 1.50147 1.29439 1.05970 1.22148 0.94522 0.86549 1.03665 1.18757 0.93569 0.91805 0.81962 1.21679 1.06085 1.19118 1.11444 0.93183 1.25800 1.01598 0.95236 0.96241 1.70031 1.40653 1.27113 1.18814 0.85533 0.79053 0.79164 0.77463 1.20634 1.20186 1.18475 1.19633 1.00227 0.95895 0.95806 1.20784 0.97098 0.92244 0.95363 1.21401 0.99643 1.02378 0.94266 1.17331 0.97404 0.90416 0.84883 1.91515 1.87463 1.81558 1.50687 1.21085 1.05643 0.94734 0.99573 1.17176 0.98001 0.79243 0.95483 1.91487 1.90965 1.34058 1.94714 0.89024 0.89004 0.91951 0.90042 0.89056 0.91650 0.98149 0.95579 0.92379 0.84116 0.81911 0.81649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.64 71.98 0.62 -2.21 16 2 C -0.06 -1.80 2.08 -12.29 -0.03 -1.83 16 3 H 0.11 2.98 6.38 -2.39 -0.02 2.96 16 4 C 0.50 20.31 6.95 87.66 0.61 20.92 16 5 O -0.59 -29.46 14.71 -3.02 -0.04 -29.50 16 6 N -0.61 -24.97 2.86 -851.10 -2.43 -27.40 16 7 C 0.07 2.07 8.80 127.77 1.12 3.19 16 8 C 0.26 13.87 5.16 85.63 0.44 14.31 16 9 C -0.54 -31.45 9.39 25.60 0.24 -31.21 16 10 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 11 C 0.01 0.60 5.46 84.65 0.46 1.07 16 12 N -0.93 -55.86 13.29 21.45 0.28 -55.58 16 13 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 14 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 15 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 16 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 17 C -0.11 -3.23 4.40 -19.82 -0.09 -3.32 16 18 C -0.04 -0.98 7.93 22.26 0.18 -0.80 16 19 C -0.16 -3.68 10.03 22.32 0.22 -3.45 16 20 C 0.12 2.81 7.30 22.37 0.16 2.98 16 21 F -0.13 -3.08 17.27 44.97 0.78 -2.31 16 22 C -0.19 -4.50 10.01 22.36 0.22 -4.28 16 23 C 0.12 3.24 7.24 22.37 0.16 3.40 16 24 F -0.13 -3.63 16.19 44.97 0.73 -2.91 16 25 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.09 1.57 4.53 -2.39 -0.01 1.56 16 27 H 0.06 1.24 7.37 -2.38 -0.02 1.22 16 28 H 0.08 1.80 6.95 -2.38 -0.02 1.78 16 29 H 0.09 2.00 6.01 -2.38 -0.01 1.99 16 30 H 0.06 1.98 8.07 -2.38 -0.02 1.96 16 31 H 0.00 0.02 7.42 -2.39 -0.02 0.01 16 32 H 0.03 1.40 8.07 -2.38 -0.02 1.38 16 33 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 34 H 0.14 3.70 7.51 -2.91 -0.02 3.68 16 35 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 36 H 0.17 3.12 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -72.49 311.25 6.78 -65.71 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 1.11 Total: 6.05 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 4.34 Total: -1.24 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -2.15 Total: -82.97 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.04 Total: -29.50 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 1.50 Total: -5.21 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -72.49 6.78 -65.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319083501.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.118 kcal (2) G-P(sol) polarization free energy of solvation -72.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds