Wall clock time and date at job start Tue Mar 31 2020 05:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47288 * 2 1 4 4 C 1.50706 * 109.47169 * 240.00276 * 2 1 3 5 5 H 1.07994 * 119.99897 * 239.99997 * 4 2 1 6 6 C 1.37880 * 119.99735 * 60.00094 * 4 2 1 7 7 N 1.31509 * 119.99988 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99573 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47471 * 89.99847 * 8 6 4 10 10 H 1.48504 * 109.46978 * 210.00034 * 8 6 4 11 11 H 1.48497 * 109.47181 * 329.99575 * 8 6 4 12 12 N 1.46500 * 109.47169 * 120.00325 * 2 1 3 13 13 C 1.34773 * 119.99996 * 274.99870 * 12 2 1 14 14 O 1.21277 * 120.00100 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00068 * 179.97438 * 13 12 2 16 16 H 1.09002 * 109.46959 * 60.00140 * 15 13 12 17 17 C 1.53000 * 109.47083 * 299.99925 * 15 13 12 18 18 C 1.50703 * 109.47227 * 180.02562 * 15 13 12 19 19 C 1.38231 * 119.98639 * 59.72178 * 18 15 13 20 20 C 1.38189 * 120.05104 * 179.76756 * 19 18 15 21 21 C 1.38498 * 120.02044 * 0.50892 * 20 19 18 22 22 F 1.35100 * 120.00942 * 179.76856 * 21 20 19 23 23 C 1.38395 * 119.97603 * 359.74997 * 21 20 19 24 24 C 1.38435 * 119.95312 * 359.97438 * 23 21 20 25 25 F 1.35101 * 120.01514 * 180.02562 * 24 23 21 26 26 H 1.08994 * 109.47080 * 299.99921 * 1 2 3 27 27 H 1.09001 * 109.47089 * 59.99481 * 1 2 3 28 28 H 1.09002 * 109.47361 * 179.97438 * 1 2 3 29 29 H 0.97005 * 119.99896 * 180.02562 * 7 6 4 30 30 H 0.96998 * 120.00098 * 94.99884 * 12 2 1 31 31 H 1.09001 * 109.47194 * 179.97438 * 17 15 13 32 32 H 1.08992 * 109.47399 * 299.99938 * 17 15 13 33 33 H 1.09004 * 109.46724 * 60.00424 * 17 15 13 34 34 H 1.07999 * 119.97302 * 0.02761 * 19 18 15 35 35 H 1.07998 * 119.99018 * 180.26167 * 20 19 18 36 36 H 1.07997 * 120.02499 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9436 0.8304 -2.6033 8 14 2.3214 -1.1201 -4.0080 9 1 1.3428 -2.1615 -4.4120 10 1 2.4866 -0.1411 -5.1123 11 1 3.6293 -1.7581 -3.7123 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8582 1.1582 2.4118 15 6 2.6489 -0.7290 3.5877 16 1 3.6480 -1.1215 3.3985 17 6 1.7043 -1.8825 3.9313 18 6 2.6991 0.2392 4.7415 19 6 1.5448 0.8723 5.1628 20 6 1.5885 1.7567 6.2237 21 6 2.7911 2.0176 6.8593 22 9 2.8343 2.8858 7.8935 23 6 3.9483 1.3883 6.4349 24 6 3.9023 0.4982 5.3756 25 9 5.0312 -0.1172 4.9605 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 0.7090 1.1616 -3.4844 30 1 2.2490 -1.6318 1.1525 31 1 2.0675 -2.3968 4.8211 32 1 0.7052 -1.4900 4.1205 33 1 1.6676 -2.5829 3.0969 34 1 0.6074 0.6725 4.6652 35 1 0.6853 2.2476 6.5548 36 1 4.8864 1.5908 6.9301 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319099219.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:18 Heat of formation + Delta-G solvation = -115.072345 kcal Electronic energy + Delta-G solvation = -21966.875334 eV Core-core repulsion = 18279.578941 eV Total energy + Delta-G solvation = -3687.296393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.07966 -49.05030 -39.83505 -38.25229 -34.89196 -33.96819 -32.34113 -30.86174 -29.51202 -28.40407 -25.28445 -24.71527 -23.22884 -22.42335 -20.65985 -19.28943 -18.30702 -17.55647 -17.02187 -16.06112 -15.96964 -15.83811 -15.49905 -15.30080 -15.02215 -14.55517 -14.45806 -14.17903 -13.89151 -13.15236 -12.87623 -12.75679 -12.43082 -12.35609 -11.97164 -11.87870 -11.59749 -11.29334 -11.16429 -11.09285 -10.93996 -10.72991 -10.34754 -10.25912 -9.12437 -9.07078 -9.05290 -8.62358 -8.56093 -7.94933 -6.14586 -4.23979 0.88810 0.99097 3.22762 3.26753 3.30256 3.32417 3.32939 3.79853 4.05244 4.33270 4.35104 4.47858 4.55188 4.77511 5.05617 5.17638 5.18923 5.24220 5.38479 5.65231 5.74636 5.77825 5.83462 5.88933 5.99894 6.12663 6.28097 6.70377 6.79224 6.92203 7.11629 7.41843 7.52520 7.66609 7.88526 8.12261 8.62188 8.74955 9.07274 9.43692 10.91347 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.029745 B = 0.003796 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.116431 B = 7374.000401 C = 7631.309553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.705 5.705 13 C 0.507 3.493 14 O -0.548 6.548 15 C -0.080 4.080 16 H 0.105 0.895 17 C -0.138 4.138 18 C -0.099 4.099 19 C -0.025 4.025 20 C -0.163 4.163 21 C 0.123 3.877 22 F -0.136 7.136 23 C -0.196 4.196 24 C 0.133 3.867 25 F -0.130 7.130 26 H 0.014 0.986 27 H 0.090 0.910 28 H 0.026 0.974 29 H 0.264 0.736 30 H 0.389 0.611 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.153 -3.642 16.906 17.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.352 5.352 13 C 0.291 3.709 14 O -0.426 6.426 15 C -0.101 4.101 16 H 0.123 0.877 17 C -0.195 4.195 18 C -0.100 4.100 19 C -0.044 4.044 20 C -0.182 4.182 21 C 0.103 3.897 22 F -0.114 7.114 23 C -0.215 4.215 24 C 0.114 3.886 25 F -0.109 7.109 26 H 0.033 0.967 27 H 0.108 0.892 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.221 0.779 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.900 -2.654 16.773 17.087 hybrid contribution 0.732 -0.767 -0.836 1.350 sum 2.632 -3.421 15.937 16.511 Atomic orbital electron populations 1.22065 0.98406 0.99079 1.00876 1.18761 0.91038 0.94001 0.79961 0.93370 1.21218 1.32508 1.13243 0.90329 0.92070 1.24884 0.94805 0.94920 0.99067 1.69900 1.35881 1.22379 1.23906 0.86448 0.79184 0.79277 0.82199 1.20539 1.21060 1.19838 1.46498 1.64834 1.13545 1.10362 1.20108 0.78892 0.87437 0.84478 1.90674 1.51157 1.15821 1.84975 1.20311 1.02679 0.95316 0.91817 0.87664 1.21772 0.98919 0.96431 1.02398 1.19511 0.92208 1.00556 0.97732 1.20719 0.98361 0.92408 0.92874 1.21174 0.97238 1.01607 0.98219 1.17269 0.94026 0.91136 0.87241 1.91509 1.97218 1.67001 1.55703 1.20881 0.99435 1.00991 1.00213 1.17081 0.82031 0.94487 0.95036 1.91505 1.49177 1.80884 1.89313 0.96689 0.89179 0.95469 0.92561 0.77868 0.91650 0.91739 0.91114 0.83949 0.84087 0.83653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.26 37.16 0.34 -3.18 16 2 C 0.26 6.58 2.56 -69.08 -0.18 6.40 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -13.96 8.73 -34.44 -0.30 -14.26 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.65 11.32 55.43 0.63 -24.03 16 8 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 12 N -0.70 -14.11 4.96 -54.93 -0.27 -14.38 16 13 C 0.51 9.63 6.98 -10.99 -0.08 9.56 16 14 O -0.55 -12.47 14.75 5.56 0.08 -12.39 16 15 C -0.08 -1.12 2.88 -92.92 -0.27 -1.39 16 16 H 0.11 1.40 7.13 -51.93 -0.37 1.02 16 17 C -0.14 -1.51 8.90 37.16 0.33 -1.18 16 18 C -0.10 -1.38 4.41 -104.54 -0.46 -1.84 16 19 C -0.03 -0.34 7.92 -39.60 -0.31 -0.65 16 20 C -0.16 -1.93 10.03 -39.50 -0.40 -2.32 16 21 C 0.12 1.49 7.30 -39.43 -0.29 1.20 16 22 F -0.14 -1.63 17.27 2.25 0.04 -1.59 16 23 C -0.20 -2.35 10.01 -39.45 -0.39 -2.75 16 24 C 0.13 1.79 7.24 -39.43 -0.29 1.50 16 25 F -0.13 -1.78 16.19 2.25 0.04 -1.74 16 26 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.39 6.69 7.96 -40.82 -0.32 6.36 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.70 7.40 -51.93 -0.38 0.32 16 33 H 0.07 0.73 7.56 -51.93 -0.39 0.34 16 34 H 0.14 1.83 7.51 -52.49 -0.39 1.43 16 35 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 314.67 15.07 4.74 4.74 Total: -1.00 -29.90 314.67 -6.38 -36.28 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -4.23 Total: 4.92 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -2.38 Total: -7.23 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.35 Total: -38.41 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.08 Total: -12.39 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.08 Total: -3.33 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.90 -6.38 -36.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319099219.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.797 kcal (2) G-P(sol) polarization free energy of solvation -29.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds