Wall clock time and date at job start Tue Mar 31 2020 05:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99989 * 2 1 4 4 H 1.48501 * 109.46996 * 269.99355 * 3 2 1 5 5 H 1.48498 * 109.47426 * 29.99664 * 3 2 1 6 6 H 1.48497 * 109.47121 * 149.99910 * 3 2 1 7 7 C 1.37879 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00252 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99846 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.34767 * 120.00067 * 179.97438 * 10 9 7 12 12 O 1.21585 * 120.00132 * 5.08546 * 11 10 9 13 13 N 1.34776 * 119.99990 * 185.08345 * 11 10 9 14 14 C 1.46815 * 120.33429 * 174.98313 * 13 11 10 15 15 C 1.53442 * 109.40879 * 231.91036 * 14 13 11 16 16 C 1.52725 * 108.60678 * 306.41137 * 15 14 13 17 17 H 1.09002 * 109.46271 * 302.85661 * 16 15 14 18 18 C 1.52976 * 111.26458 * 181.75343 * 16 15 14 19 19 O 1.45611 * 107.75496 * 178.62455 * 18 16 15 20 20 C 1.34117 * 117.97197 * 43.50330 * 19 18 16 21 21 O 1.21513 * 118.22017 * 165.39350 * 20 19 18 22 22 N 1.34116 * 123.55948 * 345.41165 * 20 19 18 23 23 C 1.45598 * 121.78240 * 3.90961 * 22 20 19 24 24 H 1.09000 * 109.00776 * 95.46264 * 23 22 20 25 25 C 1.47221 * 120.33304 * 355.00048 * 13 11 10 26 26 H 0.97004 * 119.99716 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.47150 * 59.99794 * 9 7 2 28 28 H 1.09000 * 109.47187 * 299.99707 * 9 7 2 29 29 H 0.96998 * 119.99468 * 0.02562 * 10 9 7 30 30 H 1.09001 * 109.48318 * 111.92889 * 14 13 11 31 31 H 1.08997 * 109.49416 * 351.89059 * 14 13 11 32 32 H 1.09000 * 109.61277 * 186.67935 * 15 14 13 33 33 H 1.08999 * 109.61391 * 66.14933 * 15 14 13 34 34 H 1.08997 * 109.79613 * 59.06646 * 18 16 15 35 35 H 1.08994 * 109.85466 * 298.22257 * 18 16 15 36 36 H 0.96998 * 119.10407 * 183.63002 * 22 20 19 37 37 H 1.08998 * 109.76929 * 246.65138 * 25 13 11 38 38 H 1.08998 * 109.76924 * 7.38782 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6128 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5622 -5.1069 -0.0918 13 7 2.6252 -5.9062 0.1045 14 6 2.1383 -7.2867 0.2164 15 6 2.7924 -7.9614 1.4294 16 6 4.3080 -7.8161 1.3093 17 1 4.6409 -8.2502 0.3665 18 6 5.0253 -8.5077 2.4701 19 8 6.4581 -8.3512 2.2630 20 6 6.9100 -7.1499 1.8740 21 8 8.1020 -6.9294 1.9585 22 7 6.1176 -6.1786 1.3970 23 6 4.6704 -6.3278 1.3411 24 1 4.2322 -5.8751 2.2306 25 6 4.0750 -5.6504 0.1067 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 3.1566 -3.4355 0.0009 30 1 2.3955 -7.8374 -0.6884 31 1 1.0557 -7.2814 0.3434 32 1 2.5265 -9.0183 1.4478 33 1 2.4500 -7.4792 2.3450 34 1 4.7678 -9.5667 2.4847 35 1 4.7356 -8.0442 3.4131 36 1 6.5194 -5.3529 1.0845 37 1 4.5242 -6.0665 -0.7950 38 1 4.2599 -4.5771 0.1492 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329255166.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:35 Heat of formation + Delta-G solvation = -101.173589 kcal Electronic energy + Delta-G solvation = -22775.594726 eV Core-core repulsion = 19232.281295 eV Total energy + Delta-G solvation = -3543.313431 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.56212 -39.85620 -37.94365 -36.97940 -34.94219 -34.30496 -33.33410 -32.22210 -30.06800 -28.24940 -26.94233 -24.47226 -23.66857 -22.98389 -21.74146 -20.34746 -19.42687 -18.81781 -18.13445 -17.45733 -16.48079 -16.05406 -15.98583 -15.59448 -15.18012 -14.95852 -14.69057 -14.52692 -14.26142 -13.71300 -13.50655 -13.35068 -12.95286 -12.67414 -12.08481 -12.03605 -11.94889 -11.73775 -11.31137 -11.22879 -11.01195 -10.92887 -10.89595 -10.57314 -10.34011 -9.64394 -9.52942 -9.43129 -8.81967 -8.64896 -7.88255 -6.21283 -4.28490 2.29233 2.50045 2.85414 3.21219 3.24014 3.28428 3.30625 3.64819 3.85745 4.01161 4.25181 4.32420 4.47885 4.48762 4.66787 4.81135 4.93914 5.00349 5.09026 5.15204 5.21700 5.37216 5.40321 5.48265 5.64579 5.77425 5.89329 6.47939 6.52568 6.93043 7.34753 7.37269 7.42155 7.48370 7.72582 7.85597 7.93746 8.63941 8.77802 9.16311 9.39267 10.88825 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.020275 B = 0.004157 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.646257 B = 6733.395822 C = 7909.634233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.266 3.734 10 N -0.728 5.728 11 C 0.698 3.302 12 O -0.592 6.592 13 N -0.636 5.636 14 C 0.130 3.870 15 C -0.122 4.122 16 C -0.138 4.138 17 H 0.096 0.904 18 C 0.067 3.933 19 O -0.343 6.343 20 C 0.661 3.339 21 O -0.536 6.536 22 N -0.722 5.722 23 C 0.118 3.882 24 H 0.086 0.914 25 C 0.111 3.889 26 H 0.266 0.734 27 H 0.026 0.974 28 H 0.025 0.975 29 H 0.385 0.615 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.422 0.578 37 H 0.076 0.924 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.350 -16.636 3.004 18.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.145 3.855 10 N -0.382 5.382 11 C 0.399 3.601 12 O -0.470 6.470 13 N -0.376 5.376 14 C 0.006 3.994 15 C -0.161 4.161 16 C -0.158 4.158 17 H 0.114 0.886 18 C -0.007 4.007 19 O -0.254 6.254 20 C 0.413 3.587 21 O -0.422 6.422 22 N -0.390 5.390 23 C 0.012 3.988 24 H 0.104 0.896 25 C -0.015 4.015 26 H 0.076 0.924 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.220 0.780 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.135 0.865 35 H 0.099 0.901 36 H 0.261 0.739 37 H 0.094 0.906 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.874 -16.946 3.138 18.948 hybrid contribution 0.828 1.482 -0.176 1.707 sum 8.702 -15.465 2.962 17.991 Atomic orbital electron populations 1.69974 1.06102 1.27363 1.48721 1.24931 0.94906 0.99406 0.94643 0.86417 0.79608 0.82633 0.78262 1.20433 1.20974 1.19759 1.21188 0.93190 0.90394 1.53455 0.92024 1.19024 0.87765 0.81030 0.97715 1.45933 1.10875 1.04450 1.76915 1.16049 0.84746 0.81007 0.78308 1.90882 1.14178 1.83673 1.58266 1.47254 1.04199 1.06392 1.79777 1.21373 1.01056 0.80495 0.96479 1.21890 0.91683 1.02127 1.00431 1.22086 0.98125 0.95059 1.00492 0.88586 1.23528 0.75695 1.03361 0.98120 1.86648 1.26998 1.30330 1.81449 1.17889 0.85207 0.78871 0.76708 1.91046 1.13677 1.77859 1.59578 1.45308 1.06802 1.19559 1.67378 1.21459 0.80181 0.96381 1.00793 0.89575 1.21687 0.81846 1.01404 0.96539 0.92394 0.95556 0.95715 0.78014 0.91893 0.88087 0.89370 0.90383 0.86466 0.90097 0.73920 0.90616 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.47 13.29 55.43 0.74 -24.73 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 7 C -0.54 -14.26 9.28 -34.44 -0.32 -14.58 16 8 H 0.06 1.50 7.60 -52.49 -0.40 1.11 16 9 C 0.27 6.80 5.43 -5.19 -0.03 6.77 16 10 N -0.73 -14.52 5.46 -66.41 -0.36 -14.88 16 11 C 0.70 13.20 8.29 -86.93 -0.72 12.48 16 12 O -0.59 -13.71 15.76 5.29 0.08 -13.63 16 13 N -0.64 -8.26 2.98 -178.40 -0.53 -8.79 16 14 C 0.13 1.32 6.39 -3.64 -0.02 1.30 16 15 C -0.12 -0.82 5.50 -26.64 -0.15 -0.97 16 16 C -0.14 -0.95 2.08 -90.66 -0.19 -1.14 16 17 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 18 C 0.07 0.44 6.64 37.15 0.25 0.69 16 19 O -0.34 -3.73 10.46 -39.05 -0.41 -4.14 16 20 C 0.66 8.08 8.54 53.76 0.46 8.54 16 21 O -0.54 -8.71 17.96 -19.43 -0.35 -9.06 16 22 N -0.72 -6.66 5.32 -59.57 -0.32 -6.98 16 23 C 0.12 0.99 2.94 -68.37 -0.20 0.79 16 24 H 0.09 0.78 8.13 -51.93 -0.42 0.36 16 25 C 0.11 1.07 6.11 -3.71 -0.02 1.05 16 26 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.38 6.51 5.76 -40.82 -0.24 6.27 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.10 1.24 7.02 -51.93 -0.36 0.88 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.12 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.42 3.47 8.78 -40.82 -0.36 3.11 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.92 5.56 -51.93 -0.29 0.63 16 LS Contribution 313.15 15.07 4.72 4.72 Total: -1.00 -34.77 313.15 -7.50 -42.27 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.01 Total: 3.30 kcal Atomic # 6 Polarization: 17.63 SS G_CDS: -1.04 Total: 16.59 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -0.48 Total: -55.38 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.67 Total: -26.83 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.77 -7.50 -42.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329255166.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.908 kcal (2) G-P(sol) polarization free energy of solvation -34.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds