Wall clock time and date at job start Tue Mar 31 2020 05:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81391 * 103.00248 * 2 1 4 4 C 1.52996 * 109.47497 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47734 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.47705 * 179.97438 * 5 4 3 7 7 N 1.40586 * 127.39183 * 268.33787 * 6 5 4 8 8 N 1.28896 * 106.84377 * 179.97438 * 7 6 5 9 9 N 1.28428 * 110.35232 * 359.75213 * 8 7 6 10 10 C 1.31562 * 110.49688 * 0.41720 * 9 8 7 11 11 N 1.38219 * 126.46249 * 179.85934 * 10 9 8 12 12 C 1.36923 * 120.00592 * 179.83485 * 11 10 9 13 13 H 1.08003 * 120.00187 * 305.68976 * 12 11 10 14 14 C 1.38802 * 120.00363 * 125.96693 * 12 11 10 15 15 N 1.31568 * 119.99565 * 348.94210 * 14 12 11 16 16 Si 1.86801 * 120.00327 * 168.94223 * 14 12 11 17 17 H 1.48494 * 109.46910 * 89.99783 * 16 14 12 18 18 H 1.48498 * 109.47172 * 210.00064 * 16 14 12 19 19 H 1.48502 * 109.46801 * 329.99672 * 16 14 12 20 20 C 1.46510 * 119.99680 * 359.82904 * 11 10 9 21 21 C 1.52996 * 117.49811 * 182.15902 * 20 11 10 22 22 C 1.53002 * 60.00240 * 252.51197 * 21 20 11 23 23 H 1.09002 * 109.46744 * 300.00446 * 1 2 3 24 24 H 1.09002 * 109.46793 * 60.00138 * 1 2 3 25 25 H 1.09001 * 109.47384 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47174 * 59.99977 * 3 2 1 27 27 H 1.08997 * 109.47266 * 300.00067 * 3 2 1 28 28 H 1.09004 * 109.47256 * 59.99848 * 4 3 2 29 29 H 1.09006 * 109.46944 * 300.00075 * 4 3 2 30 30 H 1.08999 * 109.47195 * 59.99977 * 5 4 3 31 31 H 1.09006 * 109.46827 * 299.99977 * 5 4 3 32 32 H 0.97003 * 119.99460 * 185.02692 * 15 14 12 33 33 H 1.08999 * 115.54493 * 327.87253 * 20 11 10 34 34 H 1.08998 * 117.50013 * 0.02562 * 21 20 11 35 35 H 1.08996 * 117.49477 * 145.02407 * 21 20 11 36 36 H 1.08990 * 117.49987 * 252.51386 * 22 21 20 37 37 H 1.09005 * 117.49439 * 107.48910 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.0867 3.4306 0.0013 6 7 5.5423 3.5957 0.0025 7 7 6.3860 3.7238 1.1197 8 7 7.5872 3.8464 0.6685 9 7 7.5887 3.8037 -0.6150 10 6 6.3639 3.6571 -1.0725 11 7 5.9872 3.5751 -2.3998 12 6 4.6672 3.4188 -2.7286 13 1 4.0983 2.6038 -2.3059 14 6 4.0618 4.3042 -3.6095 15 7 4.6811 5.4112 -3.9590 16 14 2.3677 3.9243 -4.2988 17 1 1.3296 4.4938 -3.4027 18 1 2.2376 4.5240 -5.6511 19 1 2.1893 2.4529 -4.3907 20 6 7.0003 3.6556 -3.4551 21 6 6.5150 3.6093 -4.9053 22 6 7.2391 2.4040 -4.3022 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8033 2.2370 0.8900 27 1 1.8033 2.2370 -0.8899 28 1 4.1617 1.4701 -0.8891 29 1 4.1609 1.4703 0.8909 30 1 3.6674 3.8999 0.8913 31 1 3.6681 3.9005 -0.8888 32 1 4.2295 6.0644 -4.5160 33 1 7.8622 4.2845 -3.2322 34 1 5.4420 3.5194 -5.0743 35 1 7.0576 4.2080 -5.6369 36 1 8.2579 2.2097 -4.6369 37 1 6.6423 1.5207 -4.0743 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332499094.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:51 Heat of formation + Delta-G solvation = 154.589697 kcal Electronic energy + Delta-G solvation = -20882.368563 eV Core-core repulsion = 17825.191482 eV Total energy + Delta-G solvation = -3057.177081 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.116 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.51932 -37.74448 -35.69819 -33.40155 -32.48000 -31.78455 -29.47728 -29.07255 -26.84509 -25.06645 -22.46293 -22.16676 -21.37372 -20.90954 -19.86533 -17.68447 -16.66687 -16.23829 -15.66541 -15.36095 -15.27085 -14.88652 -14.01889 -13.88597 -13.79970 -13.63210 -13.47573 -12.70809 -12.37703 -12.13740 -12.04898 -11.81495 -11.73117 -11.42261 -11.34297 -11.09937 -10.62520 -10.58263 -10.48255 -10.08726 -9.99356 -9.69003 -9.46386 -9.34670 -9.18467 -8.87126 -7.70255 -7.06043 -6.60452 -4.52936 1.60904 2.41053 2.56320 2.87140 2.88579 2.99543 3.03333 3.68332 3.79301 4.44274 4.54814 4.93333 4.98095 4.99754 5.01710 5.07650 5.31138 5.37876 5.55291 5.64504 5.78080 5.86825 5.90926 6.00206 6.03732 6.17411 6.35585 6.42184 6.56135 6.76735 6.80466 6.91518 7.09056 7.18644 7.34770 7.91160 8.30395 8.81827 9.22530 9.91442 10.35207 Molecular weight = 283.12amu Principal moments of inertia in cm(-1) A = 0.012562 B = 0.007737 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.405845 B = 3618.156538 C = 5006.192787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.264 6.264 3 C -0.077 4.077 4 C -0.119 4.119 5 C 0.141 3.859 6 N -0.422 5.422 7 N -0.150 5.150 8 N -0.038 5.038 9 N -0.416 5.416 10 C 0.498 3.502 11 N -0.379 5.379 12 C -0.357 4.357 13 H 0.092 0.908 14 C 0.060 3.940 15 N -0.836 5.836 16 Si 0.902 3.098 17 H -0.272 1.272 18 H -0.276 1.276 19 H -0.261 1.261 20 C 0.127 3.873 21 C -0.141 4.141 22 C -0.215 4.215 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.126 0.874 32 H 0.274 0.726 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.496 -5.237 0.736 10.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.039 6.039 3 C -0.226 4.226 4 C -0.159 4.159 5 C 0.016 3.984 6 N -0.226 5.226 7 N -0.139 5.139 8 N -0.035 5.035 9 N -0.285 5.285 10 C 0.138 3.862 11 N -0.085 5.085 12 C -0.485 4.485 13 H 0.109 0.891 14 C -0.151 4.151 15 N -0.468 5.468 16 Si 0.726 3.274 17 H -0.197 1.197 18 H -0.201 1.201 19 H -0.185 1.185 20 C 0.021 3.979 21 C -0.179 4.179 22 C -0.255 4.255 23 H 0.094 0.906 24 H 0.095 0.905 25 H 0.117 0.883 26 H 0.102 0.898 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.144 0.856 32 H 0.085 0.915 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.969 -5.812 1.388 9.180 hybrid contribution -2.693 0.886 -0.973 2.997 sum -9.661 -4.926 0.415 10.853 Atomic orbital electron populations 1.23363 0.94652 1.06260 1.04845 1.86970 1.06796 1.12012 1.98080 1.23278 1.00138 0.93879 1.05287 1.21787 0.92534 0.97259 1.04288 1.21882 0.75319 0.95793 1.05446 1.50525 1.08193 1.60560 1.03304 1.82155 0.95584 1.29190 1.07016 1.77508 1.13715 1.08447 1.03787 1.74680 1.16394 1.34964 1.02491 1.22222 0.85813 0.92029 0.86123 1.40634 1.05646 1.66742 0.95498 1.19340 0.85403 1.13022 1.30740 0.89098 1.25643 0.98634 0.94205 0.96591 1.70042 1.37066 1.06750 1.32905 0.86299 0.81982 0.79791 0.79282 1.19732 1.20063 1.18477 1.21151 0.92363 0.98528 0.85823 1.23056 1.01572 0.98478 0.94767 1.23428 1.00580 0.94166 1.07300 0.90619 0.90502 0.88284 0.89848 0.89422 0.89666 0.90878 0.90063 0.85583 0.91523 0.87342 0.87255 0.90300 0.89938 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 10.76 101.05 1.09 -0.07 16 2 S -0.26 -3.51 22.38 -107.50 -2.41 -5.92 16 3 C -0.08 -1.01 5.94 37.16 0.22 -0.78 16 4 C -0.12 -1.88 4.99 -26.74 -0.13 -2.02 16 5 C 0.14 2.49 5.64 -4.05 -0.02 2.46 16 6 N -0.42 -9.22 3.69 -61.85 -0.23 -9.45 16 7 N -0.15 -3.44 13.93 60.35 0.84 -2.60 16 8 N -0.04 -0.93 13.38 60.35 0.81 -0.12 16 9 N -0.42 -10.29 11.77 30.10 0.35 -9.93 16 10 C 0.50 11.88 8.40 -320.35 -2.69 9.18 16 11 N -0.38 -8.75 2.80 -109.48 -0.31 -9.06 16 12 C -0.36 -7.87 5.84 -15.07 -0.09 -7.95 16 13 H 0.09 1.93 4.72 -52.48 -0.25 1.68 16 14 C 0.06 1.32 3.25 -17.46 -0.06 1.26 16 15 N -0.84 -19.64 11.49 55.49 0.64 -19.00 16 16 Si 0.90 16.86 29.56 -169.99 -5.02 11.84 16 17 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 18 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 19 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 20 C 0.13 2.76 5.79 -67.93 -0.39 2.36 16 21 C -0.14 -2.80 8.35 -26.73 -0.22 -3.03 16 22 C -0.22 -4.05 10.37 -26.73 -0.28 -4.33 16 23 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 24 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 25 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 26 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 27 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.08 1.53 6.57 -51.93 -0.34 1.19 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.13 2.36 5.58 -51.93 -0.29 2.07 16 32 H 0.27 6.14 8.32 -40.82 -0.34 5.80 16 33 H 0.11 2.42 8.05 -51.93 -0.42 2.00 16 34 H 0.11 2.35 5.27 -51.93 -0.27 2.07 16 35 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 37 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 319.56 15.07 4.82 4.82 Total: -1.00 -26.43 319.56 -8.02 -34.45 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -4.93 Total: 7.87 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -2.58 Total: -2.90 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: 2.11 Total: -50.16 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -5.02 Total: 11.84 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -2.41 Total: -5.92 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -26.43 -8.02 -34.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332499094.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.035 kcal (2) G-P(sol) polarization free energy of solvation -26.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds