Wall clock time and date at job start Tue Mar 31 2020 05:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31126 * 126.54868 * 2 1 4 4 C 1.34498 * 105.61405 * 180.26181 * 3 2 1 5 5 C 1.50701 * 126.28938 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.50301 * 344.97824 * 5 4 3 7 7 C 1.53095 * 109.50676 * 105.06104 * 5 4 3 8 8 O 1.43026 * 109.25776 * 176.73724 * 7 5 4 9 9 C 1.43013 * 113.77479 * 301.40393 * 8 7 5 10 10 C 1.53098 * 109.25916 * 58.63992 * 9 8 7 11 11 N 1.47008 * 109.50785 * 224.88764 * 5 4 3 12 12 C 1.46902 * 110.99838 * 57.67412 * 11 5 4 13 13 C 1.52994 * 109.47372 * 76.34160 * 12 11 5 14 14 H 1.09004 * 109.47277 * 54.72462 * 13 12 11 15 15 O 1.42901 * 109.47003 * 294.72247 * 13 12 11 16 16 C 1.50700 * 109.47187 * 174.72338 * 13 12 11 17 17 H 1.07997 * 120.00227 * 359.97438 * 16 13 12 18 18 C 1.37881 * 120.00108 * 179.97438 * 16 13 12 19 19 N 1.31513 * 119.99900 * 180.02562 * 18 16 13 20 20 Si 1.86804 * 119.99668 * 0.02562 * 18 16 13 21 21 H 1.48500 * 109.46982 * 90.00006 * 20 18 16 22 22 H 1.48502 * 109.46730 * 209.99650 * 20 18 16 23 23 H 1.48492 * 109.47434 * 329.99791 * 20 18 16 24 24 N 1.29950 * 107.42589 * 359.97438 * 4 3 2 25 25 O 1.21306 * 110.24634 * 0.02562 * 24 4 3 26 26 H 1.09010 * 109.46968 * 179.70547 * 1 2 3 27 27 H 1.08997 * 109.47646 * 299.70701 * 1 2 3 28 28 H 1.08996 * 109.46995 * 59.71444 * 1 2 3 29 29 H 1.09008 * 109.51003 * 296.71997 * 7 5 4 30 30 H 1.09003 * 109.50769 * 56.85083 * 7 5 4 31 31 H 1.09001 * 109.50637 * 298.70392 * 9 8 7 32 32 H 1.09003 * 109.50593 * 178.57895 * 9 8 7 33 33 H 1.09007 * 109.50303 * 183.21572 * 10 9 8 34 34 H 1.08998 * 109.50772 * 63.09195 * 10 9 8 35 35 H 1.09000 * 109.47202 * 196.34543 * 12 11 5 36 36 H 1.09006 * 109.47185 * 316.33940 * 12 11 5 37 37 H 0.96699 * 114.00255 * 299.99636 * 15 13 12 38 38 H 0.97001 * 119.99681 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2878 1.0534 0.0000 4 6 3.5440 0.5728 -0.0059 5 6 4.8111 1.3887 -0.0078 6 1 4.5789 2.4208 -0.2700 7 6 5.4488 1.3458 1.3833 8 8 6.6889 2.0578 1.3560 9 6 7.6292 1.5420 0.4098 10 6 7.0129 1.5878 -0.9909 11 7 5.7519 0.8321 -0.9908 12 6 5.1553 0.8034 -2.3329 13 6 5.1613 2.2145 -2.9240 14 1 6.1758 2.6127 -2.9036 15 8 4.3031 3.0576 -2.1528 16 6 4.6696 2.1649 -4.3476 17 1 4.3821 1.2213 -4.7871 18 6 4.5869 3.3244 -5.0892 19 7 4.1574 3.2811 -6.3315 20 14 5.0850 4.9566 -4.3294 21 1 6.5297 5.1967 -4.5752 22 1 4.2901 6.0510 -4.9423 23 1 4.8313 4.9197 -2.8668 24 7 3.4645 -0.7242 -0.0086 25 8 2.3028 -1.0736 -0.0055 26 1 -0.3633 -1.0278 -0.0053 27 1 -0.3634 0.5092 0.8925 28 1 -0.3633 0.5182 -0.8874 29 1 4.7776 1.8100 2.1060 30 1 5.6311 0.3096 1.6684 31 1 7.8750 0.5114 0.6658 32 1 8.5348 2.1483 0.4291 33 1 7.7038 1.1430 -1.7072 34 1 6.8166 2.6234 -1.2685 35 1 5.7343 0.1385 -2.9738 36 1 4.1291 0.4416 -2.2667 37 1 3.3824 2.7632 -2.1266 38 1 4.0996 4.0968 -6.8533 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340974777.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:21 Heat of formation + Delta-G solvation = -3.700023 kcal Electronic energy + Delta-G solvation = -23913.662578 eV Core-core repulsion = 20374.575918 eV Total energy + Delta-G solvation = -3539.086660 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.44809 -39.76978 -36.97522 -35.82058 -34.52126 -33.44092 -32.32802 -30.99857 -29.45223 -28.76259 -26.91926 -25.05519 -23.82707 -23.24903 -22.02084 -20.99526 -19.34068 -18.05859 -17.58252 -17.31154 -16.14290 -16.02228 -15.26188 -15.04576 -14.91863 -14.84247 -14.50461 -14.18944 -13.55757 -13.51717 -13.38567 -13.19076 -12.64408 -12.44160 -12.04649 -11.84241 -11.75749 -11.52627 -11.15787 -11.01658 -10.92618 -10.83196 -10.66576 -10.30160 -10.24966 -9.86520 -9.43210 -9.26560 -8.86630 -8.60666 -7.52605 -6.18717 -4.30458 1.30393 2.35414 2.94489 3.33332 3.43539 3.55265 3.69198 3.85259 4.21993 4.33771 4.47582 4.94776 5.04166 5.12635 5.15168 5.17673 5.20151 5.26081 5.39874 5.46186 5.57050 5.66752 5.69774 5.84255 5.85957 5.94710 6.04071 6.05552 6.20225 6.35298 6.62227 6.97798 7.14958 7.17052 7.34679 7.57028 8.21007 8.36877 8.72885 8.89116 9.45264 10.91772 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.014064 B = 0.007606 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.483666 B = 3680.497082 C = 4964.156937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.167 3.833 3 N -0.474 5.474 4 C 0.190 3.810 5 C 0.122 3.878 6 H 0.117 0.883 7 C 0.078 3.922 8 O -0.379 6.379 9 C 0.062 3.938 10 C 0.013 3.987 11 N -0.525 5.525 12 C 0.039 3.961 13 C 0.160 3.840 14 H 0.063 0.937 15 O -0.577 6.577 16 C -0.564 4.564 17 H 0.071 0.929 18 C 0.085 3.915 19 N -0.891 5.891 20 Si 0.870 3.130 21 H -0.287 1.287 22 H -0.295 1.295 23 H -0.217 1.217 24 N -0.362 5.362 25 O 0.073 5.927 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.357 0.643 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.078 -5.994 15.321 16.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.053 4.053 3 N -0.208 5.208 4 C -0.084 4.084 5 C 0.012 3.988 6 H 0.134 0.866 7 C 0.000 4.000 8 O -0.297 6.297 9 C -0.015 4.015 10 C -0.115 4.115 11 N -0.251 5.251 12 C -0.088 4.088 13 C 0.102 3.898 14 H 0.080 0.920 15 O -0.384 6.384 16 C -0.602 4.602 17 H 0.089 0.911 18 C -0.120 4.120 19 N -0.528 5.528 20 Si 0.697 3.303 21 H -0.214 1.214 22 H -0.221 1.221 23 H -0.140 1.140 24 N -0.068 5.068 25 O 0.013 5.987 26 H 0.112 0.888 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.204 0.796 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.599 -5.999 15.523 16.719 hybrid contribution -0.695 0.949 -0.739 1.389 sum -2.293 -5.050 14.784 15.790 Atomic orbital electron populations 1.20342 0.80487 1.05284 1.05604 1.28804 0.98887 0.80992 0.96661 1.71882 1.00170 1.28796 1.19979 1.25376 0.94491 0.87922 1.00585 1.20870 0.85257 0.97903 0.94784 0.86562 1.22575 0.85768 0.97129 0.94540 1.87981 1.24900 1.57080 1.59746 1.22745 0.91720 0.99366 0.87620 1.22868 0.91943 0.98770 0.97910 1.62593 1.03728 1.51543 1.07191 1.22836 0.99050 0.99727 0.87204 1.20457 0.91760 0.86604 0.90973 0.91989 1.86625 1.22316 1.55273 1.74190 1.21421 1.46935 0.96055 0.95751 0.91082 1.25001 0.92930 0.99872 0.94174 1.69958 1.45061 1.28964 1.08768 0.87033 0.77797 0.82074 0.83437 1.21401 1.22133 1.13965 1.74705 0.96407 1.15819 1.19887 1.85324 1.11780 1.35945 1.65673 0.88770 0.88126 0.87821 0.88613 0.92484 0.92490 0.88389 0.89240 0.92017 0.90064 0.92135 0.79604 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.41 10.51 36.00 0.38 -0.03 16 2 C 0.17 2.12 8.51 -13.06 -0.11 2.01 16 3 N -0.47 -7.48 11.55 -9.87 -0.11 -7.60 16 4 C 0.19 3.21 5.23 -156.37 -0.82 2.40 16 5 C 0.12 2.10 2.16 -68.76 -0.15 1.95 16 6 H 0.12 2.25 5.57 -51.93 -0.29 1.96 16 7 C 0.08 1.18 6.28 37.21 0.23 1.42 16 8 O -0.38 -5.93 10.82 -35.23 -0.38 -6.31 16 9 C 0.06 0.86 7.01 37.21 0.26 1.12 16 10 C 0.01 0.21 4.78 -3.71 -0.02 0.20 16 11 N -0.53 -9.41 4.74 -227.74 -1.08 -10.49 16 12 C 0.04 0.81 5.09 -3.83 -0.02 0.79 16 13 C 0.16 3.71 1.73 -27.89 -0.05 3.66 16 14 H 0.06 1.46 5.46 -51.93 -0.28 1.18 16 15 O -0.58 -13.10 7.29 -35.23 -0.26 -13.36 16 16 C -0.56 -15.68 9.34 -34.44 -0.32 -16.00 16 17 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 18 C 0.08 2.45 5.47 -17.82 -0.10 2.35 16 19 N -0.89 -27.21 13.96 55.43 0.77 -26.44 16 20 Si 0.87 21.89 26.99 -169.99 -4.59 17.30 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 23 H -0.22 -5.35 5.31 56.52 0.30 -5.05 16 24 N -0.36 -6.10 12.09 30.90 0.37 -5.73 16 25 O 0.07 1.05 11.31 18.11 0.20 1.25 16 26 H 0.09 0.43 8.14 -51.92 -0.42 0.00 16 27 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.10 1.30 8.14 -51.92 -0.42 0.88 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.06 1.13 6.25 -51.93 -0.32 0.81 16 35 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 36 H 0.06 1.31 6.47 -51.93 -0.34 0.97 16 37 H 0.36 7.86 9.04 45.56 0.41 8.27 16 38 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 306.76 15.07 4.62 4.62 Total: -1.00 -33.27 306.76 -5.44 -38.71 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -4.28 Total: 8.18 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -0.71 Total: -0.14 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.05 Total: -50.25 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.43 Total: -18.42 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.59 Total: 17.30 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.27 -5.44 -38.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340974777.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.009 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds