Wall clock time and date at job start Tue Mar 31 2020 05:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47178 * 2 1 4 4 O 1.42910 * 109.47259 * 119.99732 * 2 1 3 5 5 C 1.42900 * 114.00023 * 149.99979 * 4 2 1 6 6 C 1.50697 * 109.46932 * 180.02562 * 5 4 2 7 7 N 1.31128 * 126.55280 * 89.71261 * 6 5 4 8 8 C 1.34495 * 105.61310 * 179.91584 * 7 6 5 9 9 C 1.50699 * 126.28988 * 180.12854 * 8 7 6 10 10 H 1.09007 * 109.47140 * 345.23621 * 9 8 7 11 11 C 1.52991 * 109.47488 * 105.23607 * 9 8 7 12 12 N 1.46498 * 109.47194 * 225.23983 * 9 8 7 13 13 C 1.34782 * 120.00191 * 154.99472 * 12 9 8 14 14 O 1.21688 * 119.99870 * 0.02562 * 13 12 9 15 15 C 1.46370 * 120.00067 * 179.97438 * 13 12 9 16 16 H 1.08003 * 120.00444 * 353.94571 * 15 13 12 17 17 C 1.40047 * 119.99808 * 173.94208 * 15 13 12 18 18 N 1.30669 * 120.00353 * 6.15207 * 17 15 13 19 19 Si 1.86801 * 120.00079 * 186.15249 * 17 15 13 20 20 H 1.48498 * 109.47346 * 94.98174 * 19 17 15 21 21 H 1.48501 * 109.47584 * 214.98350 * 19 17 15 22 22 H 1.48505 * 109.46976 * 334.98316 * 19 17 15 23 23 N 1.29947 * 107.42688 * 0.35019 * 8 7 6 24 24 O 1.21305 * 110.24767 * 359.77806 * 23 8 7 25 25 H 1.09006 * 109.46864 * 300.00105 * 1 2 3 26 26 H 1.08997 * 109.46610 * 60.00106 * 1 2 3 27 27 H 1.08995 * 109.47056 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47221 * 239.99968 * 2 1 3 29 29 H 1.08996 * 109.47537 * 59.99697 * 3 2 1 30 30 H 1.09001 * 109.47106 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47263 * 299.99493 * 3 2 1 32 32 H 1.08997 * 109.46884 * 299.99963 * 5 4 2 33 33 H 1.08997 * 109.46984 * 60.00278 * 5 4 2 34 34 H 1.08999 * 109.47375 * 300.00263 * 11 9 8 35 35 H 1.08994 * 109.47142 * 60.00161 * 11 9 8 36 36 H 1.09006 * 109.47573 * 180.02562 * 11 9 8 37 37 H 0.96997 * 120.00066 * 334.99510 * 12 9 8 38 38 H 0.97006 * 120.00528 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1669 5 6 3.2660 -1.3245 0.9887 6 6 3.6693 -1.9987 2.2747 7 7 3.3773 -3.2241 2.6389 8 6 3.9437 -3.3871 3.8479 9 6 3.8978 -4.6335 4.6936 10 1 3.1258 -5.3025 4.3132 11 6 5.2550 -5.3374 4.6387 12 7 3.5909 -4.2720 6.0798 13 6 3.0119 -5.1725 6.8987 14 8 2.7445 -6.2859 6.4867 15 6 2.7058 -4.8115 8.2837 16 1 3.0310 -3.8602 8.6784 17 6 1.9911 -5.6997 9.0972 18 7 1.7020 -6.8970 8.6609 19 14 1.4511 -5.1728 10.8061 20 1 0.0584 -4.6606 10.7492 21 1 1.5131 -6.3370 11.7259 22 1 2.3526 -4.1018 11.3018 23 7 4.5338 -2.2707 4.1549 24 8 4.3880 -1.4601 3.2643 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 3.1809 -2.0707 0.1988 33 1 4.0200 -0.5874 0.7126 34 1 5.4834 -5.6064 3.6074 35 1 6.0269 -4.6685 5.0191 36 1 5.2217 -6.2393 5.2501 37 1 3.8044 -3.3847 6.4082 38 1 1.2067 -7.5121 9.2242 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347537823.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:00 Heat of formation + Delta-G solvation = -20.989342 kcal Electronic energy + Delta-G solvation = -21811.987419 eV Core-core repulsion = 18272.151037 eV Total energy + Delta-G solvation = -3539.836381 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.51890 -38.88991 -37.80021 -35.93163 -34.39135 -33.29670 -32.42286 -31.73578 -29.62010 -27.90700 -27.36910 -26.15435 -24.69037 -23.09527 -21.75674 -21.10495 -19.30756 -18.21599 -17.97902 -17.13853 -16.88750 -16.07224 -15.65203 -15.36680 -14.88253 -14.40678 -14.14138 -13.49815 -13.39774 -13.33213 -13.07265 -12.58876 -12.52986 -12.39850 -12.17079 -11.97576 -11.79556 -11.69056 -11.38731 -11.14030 -11.10659 -11.07697 -10.97975 -10.67935 -10.47236 -10.22325 -10.09249 -9.90017 -8.86180 -7.68776 -7.65069 -6.21409 -4.65464 1.08020 2.24276 2.64451 3.14957 3.21993 3.25851 3.42275 3.73208 4.11141 4.16716 4.46841 4.55928 4.58954 4.67431 4.74827 4.78644 4.97285 5.15767 5.23430 5.34724 5.42012 5.49468 5.57176 5.67125 5.81297 5.85237 5.87743 5.93145 6.01893 6.18675 6.45307 6.70259 6.70989 7.43205 7.83744 7.98458 8.27764 8.30703 9.01113 9.45377 10.55999 10.73800 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.021241 B = 0.003370 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.881427 B = 8306.963457 C = 8934.334089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.083 3.917 3 C -0.178 4.178 4 O -0.374 6.374 5 C 0.163 3.837 6 C 0.164 3.836 7 N -0.451 5.451 8 C 0.180 3.820 9 C 0.240 3.760 10 H 0.107 0.893 11 C -0.152 4.152 12 N -0.758 5.758 13 C 0.558 3.442 14 O -0.577 6.577 15 C -0.543 4.543 16 H 0.069 0.931 17 C 0.088 3.912 18 N -0.766 5.766 19 Si 0.909 3.091 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.264 1.264 23 N -0.369 5.369 24 O 0.086 5.914 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.385 0.615 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.437 14.662 -18.086 23.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.026 3.974 3 C -0.236 4.236 4 O -0.293 6.293 5 C 0.085 3.915 6 C -0.058 4.058 7 N -0.187 5.187 8 C -0.094 4.094 9 C 0.132 3.868 10 H 0.125 0.875 11 C -0.211 4.211 12 N -0.415 5.415 13 C 0.363 3.637 14 O -0.459 6.459 15 C -0.580 4.580 16 H 0.087 0.913 17 C -0.132 4.132 18 N -0.394 5.394 19 Si 0.734 3.266 20 H -0.198 1.198 21 H -0.204 1.204 22 H -0.188 1.188 23 N -0.074 5.074 24 O 0.025 5.975 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.217 0.783 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.281 13.356 -17.463 22.103 hybrid contribution -0.063 0.914 0.642 1.119 sum 2.218 14.271 -16.821 22.170 Atomic orbital electron populations 1.21883 0.93041 1.03252 1.02758 1.22180 0.95480 0.92355 0.87368 1.22340 1.01686 0.96528 1.03012 1.88046 1.34793 1.69914 1.36502 1.20502 0.87721 0.96141 0.87151 1.28170 0.93966 0.89130 0.94503 1.71880 1.20239 1.14997 1.11538 1.26384 0.94309 0.96948 0.91730 1.18784 0.98840 0.86460 0.82698 0.87485 1.22161 0.95766 1.01733 1.01476 1.46290 1.68871 1.17764 1.08544 1.18250 0.76374 0.83275 0.85842 1.90604 1.56874 1.21489 1.76956 1.20851 1.38075 1.04241 0.94806 0.91295 1.25702 0.94190 0.93968 0.99347 1.70021 1.28731 1.04736 1.35950 0.86330 0.79487 0.78914 0.81876 1.19773 1.20393 1.18843 1.74613 1.21829 1.01531 1.09460 1.85295 1.53872 1.37214 1.21102 0.91540 0.90950 0.91589 0.91528 0.91438 0.92220 0.91342 0.88473 0.89493 0.92758 0.92740 0.90142 0.78325 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.56 37.16 0.36 -0.71 16 2 C 0.08 0.59 3.34 -26.73 -0.09 0.50 16 3 C -0.18 -1.04 9.53 37.16 0.35 -0.68 16 4 O -0.37 -3.99 9.97 -35.23 -0.35 -4.34 16 5 C 0.16 1.47 6.37 36.00 0.23 1.70 16 6 C 0.16 2.28 8.14 -13.06 -0.11 2.17 16 7 N -0.45 -7.79 11.55 -9.87 -0.11 -7.91 16 8 C 0.18 3.40 7.01 -156.37 -1.10 2.30 16 9 C 0.24 5.08 3.12 -69.09 -0.22 4.87 16 10 H 0.11 2.48 7.58 -51.93 -0.39 2.09 16 11 C -0.15 -2.83 9.47 37.15 0.35 -2.48 16 12 N -0.76 -18.19 5.06 -56.35 -0.29 -18.48 16 13 C 0.56 16.21 7.71 -12.99 -0.10 16.11 16 14 O -0.58 -18.66 14.71 5.20 0.08 -18.59 16 15 C -0.54 -15.70 9.53 -35.63 -0.34 -16.04 16 16 H 0.07 1.85 7.85 -52.48 -0.41 1.44 16 17 C 0.09 2.49 5.49 -17.37 -0.10 2.39 16 18 N -0.77 -23.12 11.85 55.55 0.66 -22.47 16 19 Si 0.91 20.51 29.56 -169.99 -5.03 15.48 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 23 N -0.37 -6.60 11.86 30.90 0.37 -6.23 16 24 O 0.09 1.31 11.31 18.10 0.20 1.52 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.34 7.79 -51.93 -0.40 -0.06 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.31 7.87 -51.93 -0.41 -0.10 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.10 0.69 8.08 -51.93 -0.42 0.27 16 33 H 0.09 0.50 7.87 -51.93 -0.41 0.09 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 37 H 0.38 8.67 8.34 -40.82 -0.34 8.33 16 38 H 0.27 7.34 8.29 -40.82 -0.34 7.01 16 LS Contribution 335.28 15.07 5.05 5.05 Total: -1.00 -35.76 335.28 -5.47 -41.23 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.30 Total: 4.60 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: -0.75 Total: 10.13 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: 0.63 Total: -55.08 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.07 Total: -21.41 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.76 -5.47 -41.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347537823.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.240 kcal (2) G-P(sol) polarization free energy of solvation -35.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds