Wall clock time and date at job start Tue Mar 31 2020 05:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47090 * 2 1 4 4 N 1.29946 * 126.28262 * 90.02882 * 3 2 1 5 5 O 1.21300 * 110.24653 * 179.97438 * 4 3 2 6 6 C 1.33639 * 109.81661 * 359.97438 * 5 4 3 7 7 C 1.50697 * 126.55487 * 179.97438 * 6 5 4 8 8 O 1.42896 * 109.47490 * 269.98168 * 7 6 5 9 9 C 1.42895 * 114.00495 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47635 * 179.97438 * 9 8 7 11 11 O 1.21281 * 119.99511 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00245 * 179.97438 * 10 9 8 13 13 C 1.46495 * 119.99863 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.47599 * 35.00191 * 13 12 10 15 15 C 1.53003 * 109.47139 * 274.99938 * 13 12 10 16 16 C 1.50705 * 109.46781 * 155.00294 * 13 12 10 17 17 H 1.07996 * 120.00138 * 359.97438 * 16 13 12 18 18 C 1.37878 * 119.99931 * 179.97438 * 16 13 12 19 19 N 1.31513 * 119.99994 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 120.00019 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47022 * 90.00374 * 20 18 16 22 22 H 1.48507 * 109.46989 * 209.99993 * 20 18 16 23 23 H 1.48499 * 109.47293 * 330.00163 * 20 18 16 24 24 N 1.31140 * 106.89456 * 359.77589 * 6 5 4 25 25 H 1.09011 * 109.46854 * 299.99717 * 1 2 3 26 26 H 1.09005 * 109.47366 * 59.99142 * 1 2 3 27 27 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46812 * 240.00616 * 2 1 3 29 29 H 1.08997 * 109.47178 * 120.00239 * 2 1 3 30 30 H 1.08996 * 109.46950 * 29.98168 * 7 6 5 31 31 H 1.09001 * 109.47200 * 149.97819 * 7 6 5 32 32 H 1.09007 * 109.47069 * 300.00138 * 9 8 7 33 33 H 1.09010 * 109.47032 * 59.99564 * 9 8 7 34 34 H 0.96996 * 119.99778 * 0.02562 * 12 10 9 35 35 H 1.08992 * 109.47371 * 300.00202 * 15 13 12 36 36 H 1.08994 * 109.46569 * 60.00436 * 15 13 12 37 37 H 1.09005 * 109.46568 * 180.02562 * 15 13 12 38 38 H 0.96999 * 120.00505 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2892 2.1457 1.0475 5 8 2.6781 3.2447 0.7124 6 6 2.7077 3.3277 -0.6211 7 6 3.1300 4.5223 -1.4368 8 8 1.9931 5.3486 -1.6954 9 6 2.2860 6.5157 -2.4661 10 6 1.0218 7.3083 -2.6778 11 8 -0.0266 6.9128 -2.2138 12 7 1.0566 8.4571 -3.3817 13 6 -0.1723 9.2277 -3.5870 14 1 -0.8040 9.1468 -2.7025 15 6 -0.9225 8.6775 -4.8017 16 6 0.1761 10.6746 -3.8247 17 1 1.2094 10.9886 -3.8227 18 6 -0.8244 11.5974 -4.0449 19 7 -2.0828 11.2150 -4.0469 20 14 -0.3927 13.3908 -4.3389 21 1 -0.2009 13.6218 -5.7932 22 1 -1.4949 14.2532 -3.8420 23 1 0.8607 13.7234 -3.6153 24 7 2.3032 2.1694 -1.0841 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8932 -0.5137 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8763 5.0936 -0.8849 31 1 3.5563 4.1849 -2.3816 32 1 3.0147 7.1283 -1.9351 33 1 2.6951 6.2199 -3.4322 34 1 1.8952 8.7735 -3.7524 35 1 -0.2908 8.7585 -5.6862 36 1 -1.1744 7.6311 -4.6296 37 1 -1.8366 9.2513 -4.9546 38 1 -2.7867 11.8642 -4.2014 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001443782539.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:48 Heat of formation + Delta-G solvation = -17.151148 kcal Electronic energy + Delta-G solvation = -21396.326007 eV Core-core repulsion = 17856.656063 eV Total energy + Delta-G solvation = -3539.669945 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.79518 -39.23632 -37.69992 -36.56949 -34.79559 -34.05491 -32.44263 -31.89977 -29.78024 -28.34158 -26.41100 -25.33862 -25.26210 -23.40809 -21.41358 -21.28390 -19.54168 -18.39629 -17.90404 -17.29693 -16.78127 -16.34906 -15.95641 -15.30902 -15.11249 -14.92104 -14.40136 -14.25029 -13.90059 -13.29478 -13.18409 -12.77832 -12.45842 -12.28776 -12.14549 -12.00211 -11.67464 -11.62649 -11.53378 -11.20088 -11.13158 -10.95911 -10.75586 -10.34913 -10.25762 -10.22337 -10.00629 -9.08209 -9.04670 -8.58163 -7.97251 -6.14427 -4.24293 0.81521 1.92496 2.44143 3.20652 3.22784 3.28210 3.30302 3.32114 3.49648 3.77758 4.27150 4.42799 4.60320 4.69639 4.82808 4.86518 4.92680 5.06635 5.10321 5.17677 5.28506 5.41544 5.44840 5.52525 5.61754 5.76148 5.88169 6.67407 6.81517 6.94551 7.12425 7.40715 7.53046 7.66385 7.88696 7.93531 8.12399 8.59345 8.74951 9.06083 9.43188 10.91572 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.036678 B = 0.002668 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.215804 B =10492.281827 C =10857.427981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.031 4.031 3 C 0.169 3.831 4 N -0.380 5.380 5 O 0.088 5.912 6 C 0.190 3.810 7 C 0.154 3.846 8 O -0.354 6.354 9 C 0.044 3.956 10 C 0.501 3.499 11 O -0.533 6.533 12 N -0.707 5.707 13 C 0.266 3.734 14 H 0.049 0.951 15 C -0.148 4.148 16 C -0.535 4.535 17 H 0.062 0.938 18 C 0.066 3.934 19 N -0.883 5.883 20 Si 0.903 3.097 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.274 1.274 24 N -0.461 5.461 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.389 0.611 35 H 0.027 0.973 36 H 0.015 0.985 37 H 0.091 0.909 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.790 -16.673 4.275 21.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.070 4.070 3 C -0.104 4.104 4 N -0.086 5.086 5 O 0.028 5.972 6 C -0.032 4.032 7 C 0.075 3.925 8 O -0.271 6.271 9 C -0.035 4.035 10 C 0.284 3.716 11 O -0.410 6.410 12 N -0.357 5.357 13 C 0.165 3.835 14 H 0.067 0.933 15 C -0.207 4.207 16 C -0.573 4.573 17 H 0.080 0.920 18 C -0.138 4.138 19 N -0.520 5.520 20 Si 0.730 3.270 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.198 1.198 24 N -0.197 5.197 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.222 0.778 35 H 0.046 0.954 36 H 0.034 0.966 37 H 0.109 0.891 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.415 -17.490 5.165 21.515 hybrid contribution 0.876 1.396 -0.522 1.729 sum 12.291 -16.093 4.643 20.776 Atomic orbital electron populations 1.21759 0.93085 1.02840 1.03111 1.19945 0.97032 0.85410 1.04605 1.25938 1.00461 1.00572 0.83392 1.74638 1.17125 0.92925 1.23929 1.85304 1.60176 1.27095 1.24623 1.28212 0.96664 0.96179 0.82104 1.20588 0.89075 0.85625 0.97191 1.88092 1.30076 1.35150 1.73761 1.22448 0.97845 0.86910 0.96347 1.19948 0.89416 0.82257 0.79982 1.90711 1.31875 1.68875 1.49508 1.46433 1.13895 1.22281 1.53044 1.18775 0.80669 0.88613 0.95488 0.93274 1.22091 1.02757 0.97760 0.98078 1.21200 0.93509 0.91778 1.50823 0.91985 1.24900 0.94826 0.99254 0.94783 1.69902 0.99116 1.34629 1.48361 0.86428 0.78125 0.84003 0.78405 1.20536 1.21062 1.19847 1.71892 1.16179 1.02186 1.29413 0.92213 0.91686 0.90979 0.88523 0.89085 0.88973 0.88147 0.89911 0.90017 0.77823 0.95384 0.96576 0.89068 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.89 37.16 0.37 -0.89 16 2 C -0.03 -0.27 6.56 -27.88 -0.18 -0.45 16 3 C 0.17 2.11 7.47 -156.37 -1.17 0.94 16 4 N -0.38 -5.17 12.16 30.90 0.38 -4.80 16 5 O 0.09 1.17 11.31 18.11 0.20 1.37 16 6 C 0.19 2.35 8.14 -13.05 -0.11 2.25 16 7 C 0.15 1.48 6.56 36.00 0.24 1.71 16 8 O -0.35 -5.17 9.86 -55.14 -0.54 -5.71 16 9 C 0.04 0.57 6.42 36.01 0.23 0.80 16 10 C 0.50 9.78 7.87 -10.99 -0.09 9.69 16 11 O -0.53 -13.27 16.16 -14.35 -0.23 -13.50 16 12 N -0.71 -14.06 5.07 -54.93 -0.28 -14.34 16 13 C 0.27 6.68 2.56 -69.08 -0.18 6.50 16 14 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 15 C -0.15 -3.67 9.26 37.16 0.34 -3.32 16 16 C -0.53 -13.88 8.73 -34.44 -0.30 -14.18 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 19 N -0.88 -24.74 11.32 55.43 0.63 -24.12 16 20 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 N -0.46 -6.20 11.55 -9.87 -0.11 -6.32 16 25 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.79 8.14 -51.92 -0.42 0.36 16 34 H 0.39 6.33 8.54 -40.82 -0.35 5.98 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 38 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 334.85 15.07 5.05 5.05 Total: -1.00 -34.58 334.85 -6.12 -40.70 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.25 Total: 1.65 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -0.94 Total: 4.71 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: 0.61 Total: -49.57 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.57 Total: -17.84 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.58 -6.12 -40.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443782539.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.552 kcal (2) G-P(sol) polarization free energy of solvation -34.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds