Wall clock time and date at job start Tue Mar 31 2020 05:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47090 * 2 1 4 4 N 1.29946 * 126.28262 * 90.02882 * 3 2 1 5 5 O 1.21300 * 110.24653 * 179.97438 * 4 3 2 6 6 C 1.33639 * 109.81661 * 359.97438 * 5 4 3 7 7 C 1.50697 * 126.55487 * 179.97438 * 6 5 4 8 8 O 1.42896 * 109.47490 * 269.98168 * 7 6 5 9 9 C 1.42895 * 114.00495 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47635 * 179.97438 * 9 8 7 11 11 O 1.21281 * 119.99511 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00245 * 179.97438 * 10 9 8 13 13 C 1.46495 * 119.99863 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47560 * 324.99982 * 13 12 10 15 15 C 1.53003 * 109.47227 * 85.00334 * 13 12 10 16 16 C 1.50707 * 109.47144 * 205.00123 * 13 12 10 17 17 H 1.07998 * 119.99732 * 0.02562 * 16 13 12 18 18 C 1.37871 * 120.00198 * 180.02562 * 16 13 12 19 19 N 1.31517 * 119.99920 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99939 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.47071 * 60.00285 * 20 18 16 22 22 H 1.48508 * 109.46841 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47160 * 299.99890 * 20 18 16 24 24 N 1.31140 * 106.89456 * 359.77589 * 6 5 4 25 25 H 1.09005 * 109.47366 * 59.99142 * 1 2 3 26 26 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 27 27 H 1.09011 * 109.46854 * 299.99717 * 1 2 3 28 28 H 1.08994 * 109.46812 * 240.00616 * 2 1 3 29 29 H 1.08997 * 109.47178 * 120.00239 * 2 1 3 30 30 H 1.08996 * 109.46950 * 29.98168 * 7 6 5 31 31 H 1.09001 * 109.47200 * 149.97819 * 7 6 5 32 32 H 1.09007 * 109.47069 * 300.00138 * 9 8 7 33 33 H 1.09010 * 109.47032 * 59.99564 * 9 8 7 34 34 H 0.96996 * 119.99778 * 0.02562 * 12 10 9 35 35 H 1.08997 * 109.47288 * 179.97438 * 15 13 12 36 36 H 1.08999 * 109.47058 * 300.00389 * 15 13 12 37 37 H 1.08998 * 109.46717 * 59.99720 * 15 13 12 38 38 H 0.97004 * 120.00072 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2892 2.1457 1.0475 5 8 2.6781 3.2447 0.7124 6 6 2.7077 3.3277 -0.6211 7 6 3.1300 4.5223 -1.4368 8 8 1.9931 5.3486 -1.6954 9 6 2.2860 6.5157 -2.4661 10 6 1.0218 7.3083 -2.6778 11 8 -0.0266 6.9128 -2.2138 12 7 1.0566 8.4571 -3.3817 13 6 -0.1723 9.2277 -3.5870 14 1 -1.0155 8.5455 -3.6941 15 6 -0.4069 10.1435 -2.3839 16 6 -0.0394 10.0620 -4.8350 17 1 0.8693 10.0218 -5.4172 18 6 -1.0780 10.8766 -5.2335 19 7 -2.1848 10.9252 -4.5247 20 14 -0.9135 11.9102 -6.7808 21 1 -0.6869 11.0209 -7.9483 22 1 -2.1592 12.6915 -6.9888 23 1 0.2357 12.8392 -6.6357 24 7 2.3032 2.1694 -1.0841 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8932 -0.5137 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8763 5.0936 -0.8849 31 1 3.5563 4.1849 -2.3816 32 1 3.0147 7.1283 -1.9351 33 1 2.6951 6.2199 -3.4322 34 1 1.8952 8.7735 -3.7524 35 1 -1.3209 10.7173 -2.5369 36 1 -0.5029 9.5402 -1.4813 37 1 0.4364 10.8258 -2.2769 38 1 -2.9156 11.4981 -4.8053 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001443782540.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:50 Heat of formation + Delta-G solvation = -17.101167 kcal Electronic energy + Delta-G solvation = -21395.883882 eV Core-core repulsion = 17856.216104 eV Total energy + Delta-G solvation = -3539.667777 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.79539 -39.23622 -37.69978 -36.56887 -34.79468 -34.05373 -32.44137 -31.89886 -29.77961 -28.34127 -26.41100 -25.33699 -25.26031 -23.40758 -21.41149 -21.28401 -19.54112 -18.39719 -17.90471 -17.28946 -16.79070 -16.36170 -15.93228 -15.30722 -15.11656 -14.92441 -14.41448 -14.15016 -14.01805 -13.31107 -13.04629 -12.87394 -12.47259 -12.24502 -12.15725 -11.99815 -11.68027 -11.61487 -11.53227 -11.20042 -11.12047 -10.97055 -10.75875 -10.35241 -10.25272 -10.22299 -10.00627 -9.09154 -9.04758 -8.57426 -7.97282 -6.14134 -4.24128 0.81482 1.92615 2.44092 3.20721 3.24124 3.28137 3.30034 3.31244 3.49691 3.77806 4.27250 4.42896 4.60469 4.69319 4.83117 4.86827 4.93027 5.06584 5.10433 5.17829 5.28542 5.41589 5.45188 5.52718 5.61975 5.76385 5.88545 6.67410 6.81494 6.94424 7.12392 7.40741 7.52964 7.66410 7.88752 7.93540 8.12548 8.59364 8.74905 9.06084 9.43313 10.91812 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.033828 B = 0.002668 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.507613 B =10490.428773 C =10713.554329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.031 4.031 3 C 0.169 3.831 4 N -0.380 5.380 5 O 0.088 5.912 6 C 0.190 3.810 7 C 0.154 3.846 8 O -0.354 6.354 9 C 0.044 3.956 10 C 0.501 3.499 11 O -0.533 6.533 12 N -0.707 5.707 13 C 0.266 3.734 14 H 0.049 0.951 15 C -0.148 4.148 16 C -0.535 4.535 17 H 0.061 0.939 18 C 0.066 3.934 19 N -0.883 5.883 20 Si 0.903 3.097 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 N -0.461 5.461 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.389 0.611 35 H 0.091 0.909 36 H 0.015 0.985 37 H 0.027 0.973 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.215 -15.423 6.322 21.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.070 4.070 3 C -0.103 4.103 4 N -0.086 5.086 5 O 0.028 5.972 6 C -0.032 4.032 7 C 0.075 3.925 8 O -0.271 6.271 9 C -0.035 4.035 10 C 0.284 3.716 11 O -0.410 6.410 12 N -0.357 5.357 13 C 0.165 3.835 14 H 0.067 0.933 15 C -0.207 4.207 16 C -0.574 4.574 17 H 0.080 0.920 18 C -0.137 4.137 19 N -0.520 5.520 20 Si 0.730 3.270 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.201 1.201 24 N -0.196 5.196 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.222 0.778 35 H 0.109 0.891 36 H 0.034 0.966 37 H 0.046 0.954 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.841 -16.225 7.233 21.349 hybrid contribution 0.758 1.029 -1.122 1.700 sum 12.599 -15.196 6.111 20.664 Atomic orbital electron populations 1.21760 0.93080 1.02845 1.03113 1.19947 0.97037 0.85408 1.04608 1.25940 1.00444 1.00573 0.83386 1.74636 1.17148 0.92929 1.23928 1.85302 1.60194 1.27103 1.24628 1.28214 0.96672 0.96186 0.82096 1.20588 0.89062 0.85623 0.97202 1.88092 1.30082 1.35156 1.73750 1.22448 0.97807 0.86910 0.96385 1.19948 0.89430 0.82092 0.80132 1.90711 1.31797 1.69253 1.49207 1.46434 1.13925 1.22452 1.52845 1.18769 0.81625 0.89440 0.93682 0.93288 1.22090 1.02708 0.99515 0.96357 1.21164 1.01982 1.25620 1.08625 0.92040 1.24897 0.94973 0.96619 0.97243 1.69896 1.04952 1.38759 1.38412 0.86486 0.77491 0.80073 0.82902 1.20165 1.21122 1.20142 1.71896 1.16149 1.02185 1.29406 0.91674 0.90977 0.92220 0.88514 0.89087 0.88998 0.88123 0.89983 0.89945 0.77824 0.89071 0.96570 0.95384 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.89 37.16 0.37 -0.90 16 2 C -0.03 -0.27 6.56 -27.88 -0.18 -0.45 16 3 C 0.17 2.12 7.47 -156.37 -1.17 0.95 16 4 N -0.38 -5.17 12.16 30.90 0.38 -4.79 16 5 O 0.09 1.16 11.31 18.11 0.20 1.36 16 6 C 0.19 2.35 8.14 -13.05 -0.11 2.25 16 7 C 0.15 1.48 6.56 36.00 0.24 1.71 16 8 O -0.35 -5.17 9.86 -55.14 -0.54 -5.71 16 9 C 0.04 0.57 6.42 36.01 0.23 0.80 16 10 C 0.50 9.78 7.87 -10.99 -0.09 9.69 16 11 O -0.53 -13.27 16.16 -14.35 -0.23 -13.50 16 12 N -0.71 -14.06 5.07 -54.93 -0.28 -14.34 16 13 C 0.27 6.69 2.56 -69.08 -0.18 6.51 16 14 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 15 C -0.15 -3.66 9.26 37.16 0.34 -3.31 16 16 C -0.54 -13.92 8.73 -34.44 -0.30 -14.22 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 18 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 19 N -0.88 -24.75 11.32 55.43 0.63 -24.13 16 20 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 24 N -0.46 -6.22 11.55 -9.87 -0.11 -6.34 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 34 H 0.39 6.33 8.54 -40.82 -0.35 5.98 16 35 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 334.85 15.07 5.05 5.05 Total: -1.00 -34.57 334.85 -6.12 -40.69 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.25 Total: 1.70 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -0.94 Total: 4.71 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.61 Total: -49.60 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.57 Total: -17.85 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.57 -6.12 -40.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443782540.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.593 kcal (2) G-P(sol) polarization free energy of solvation -34.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds