Wall clock time and date at job start Tue Mar 31 2020 05:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47090 * 2 1 4 4 N 1.29946 * 126.28262 * 90.02882 * 3 2 1 5 5 O 1.21300 * 110.24653 * 179.97438 * 4 3 2 6 6 C 1.33639 * 109.81661 * 359.97438 * 5 4 3 7 7 C 1.50697 * 126.55487 * 179.97438 * 6 5 4 8 8 O 1.42896 * 109.47490 * 269.98168 * 7 6 5 9 9 C 1.42895 * 114.00495 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47635 * 179.97438 * 9 8 7 11 11 O 1.21281 * 119.99511 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00245 * 179.97438 * 10 9 8 13 13 C 1.46495 * 119.99863 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47560 * 324.99982 * 13 12 10 15 15 C 1.53003 * 109.47227 * 85.00334 * 13 12 10 16 16 C 1.50707 * 109.47144 * 205.00123 * 13 12 10 17 17 H 1.07998 * 119.99732 * 0.02562 * 16 13 12 18 18 C 1.37871 * 120.00198 * 180.02562 * 16 13 12 19 19 N 1.31517 * 119.99920 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99939 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.47071 * 60.00285 * 20 18 16 22 22 H 1.48508 * 109.46841 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47160 * 299.99890 * 20 18 16 24 24 N 1.31140 * 106.89456 * 359.77589 * 6 5 4 25 25 H 1.09005 * 109.47366 * 59.99142 * 1 2 3 26 26 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 27 27 H 1.09011 * 109.46854 * 299.99717 * 1 2 3 28 28 H 1.08994 * 109.46812 * 240.00616 * 2 1 3 29 29 H 1.08997 * 109.47178 * 120.00239 * 2 1 3 30 30 H 1.08996 * 109.46950 * 29.98168 * 7 6 5 31 31 H 1.09001 * 109.47200 * 149.97819 * 7 6 5 32 32 H 1.09007 * 109.47069 * 300.00138 * 9 8 7 33 33 H 1.09010 * 109.47032 * 59.99564 * 9 8 7 34 34 H 0.96996 * 119.99778 * 0.02562 * 12 10 9 35 35 H 1.08997 * 109.47288 * 179.97438 * 15 13 12 36 36 H 1.08999 * 109.47058 * 300.00389 * 15 13 12 37 37 H 1.08998 * 109.46717 * 59.99720 * 15 13 12 38 38 H 0.97004 * 120.00072 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2892 2.1457 1.0475 5 8 2.6781 3.2447 0.7124 6 6 2.7077 3.3277 -0.6211 7 6 3.1300 4.5223 -1.4368 8 8 1.9931 5.3486 -1.6954 9 6 2.2860 6.5157 -2.4661 10 6 1.0218 7.3083 -2.6778 11 8 -0.0266 6.9128 -2.2138 12 7 1.0566 8.4571 -3.3817 13 6 -0.1723 9.2277 -3.5870 14 1 -1.0155 8.5455 -3.6941 15 6 -0.4069 10.1435 -2.3839 16 6 -0.0394 10.0620 -4.8350 17 1 0.8693 10.0218 -5.4172 18 6 -1.0780 10.8766 -5.2335 19 7 -2.1848 10.9252 -4.5247 20 14 -0.9135 11.9102 -6.7808 21 1 -0.6869 11.0209 -7.9483 22 1 -2.1592 12.6915 -6.9888 23 1 0.2357 12.8392 -6.6357 24 7 2.3032 2.1694 -1.0841 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8932 -0.5137 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8763 5.0936 -0.8849 31 1 3.5563 4.1849 -2.3816 32 1 3.0147 7.1283 -1.9351 33 1 2.6951 6.2199 -3.4322 34 1 1.8952 8.7735 -3.7524 35 1 -1.3209 10.7173 -2.5369 36 1 -0.5029 9.5402 -1.4813 37 1 0.4364 10.8258 -2.2769 38 1 -2.9156 11.4981 -4.8053 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001443782540.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:50 Heat of formation + Delta-G solvation = -44.131772 kcal Electronic energy + Delta-G solvation = -21397.056017 eV Core-core repulsion = 17856.216104 eV Total energy + Delta-G solvation = -3540.839912 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -46.73721 -40.68083 -38.85471 -37.46315 -36.65460 -34.92511 -34.33071 -32.73857 -31.42944 -29.50323 -27.56549 -27.27337 -26.15806 -24.27834 -23.09328 -22.21547 -21.24447 -19.38112 -19.16227 -18.59037 -17.88675 -17.51261 -17.25477 -16.83041 -16.53887 -15.91091 -15.67129 -15.44305 -15.09306 -14.58766 -14.36223 -14.08155 -13.94006 -13.63929 -13.17941 -13.12825 -12.95732 -12.80673 -12.71426 -12.68087 -12.51410 -12.35755 -12.24903 -12.14167 -12.03187 -11.17079 -11.10927 -10.85958 -10.70035 -10.54819 -9.76139 -8.15928 -6.34009 -0.11958 0.99766 1.47139 1.49532 1.56938 1.58852 1.79613 2.16583 2.43742 2.57126 2.92697 3.14467 3.29497 3.76794 3.93971 4.10564 4.15161 4.19199 4.28382 4.29969 4.40184 4.42836 4.70581 4.76303 4.82555 4.88058 4.93084 4.97434 5.10461 5.19529 5.43651 5.61510 5.67844 5.82106 5.97622 6.10770 6.74320 6.97959 7.00253 7.34219 7.58491 8.90362 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.033828 B = 0.002668 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.507613 B =10490.428773 C =10713.554329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.032 4.032 3 C 0.164 3.836 4 N -0.402 5.402 5 O 0.077 5.923 6 C 0.187 3.813 7 C 0.152 3.848 8 O -0.399 6.399 9 C 0.059 3.941 10 C 0.490 3.510 11 O -0.598 6.598 12 N -0.699 5.699 13 C 0.271 3.729 14 H -0.007 1.007 15 C -0.135 4.135 16 C -0.545 4.545 17 H 0.080 0.920 18 C 0.011 3.989 19 N -0.921 5.921 20 Si 0.975 3.025 21 H -0.270 1.270 22 H -0.290 1.290 23 H -0.261 1.261 24 N -0.486 5.486 25 H 0.045 0.955 26 H 0.100 0.900 27 H 0.045 0.955 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.411 0.589 35 H 0.065 0.935 36 H 0.009 0.991 37 H 0.045 0.955 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.152 -15.584 5.227 23.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.071 4.071 3 C -0.109 4.109 4 N -0.111 5.111 5 O 0.019 5.981 6 C -0.034 4.034 7 C 0.075 3.925 8 O -0.317 6.317 9 C -0.019 4.019 10 C 0.277 3.723 11 O -0.480 6.480 12 N -0.350 5.350 13 C 0.167 3.833 14 H 0.011 0.989 15 C -0.194 4.194 16 C -0.583 4.583 17 H 0.098 0.902 18 C -0.189 4.189 19 N -0.559 5.559 20 Si 0.799 3.201 21 H -0.195 1.195 22 H -0.216 1.216 23 H -0.186 1.186 24 N -0.221 5.221 25 H 0.064 0.936 26 H 0.118 0.882 27 H 0.065 0.935 28 H 0.131 0.869 29 H 0.127 0.873 30 H 0.152 0.848 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.141 0.859 34 H 0.247 0.753 35 H 0.083 0.917 36 H 0.028 0.972 37 H 0.065 0.935 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.857 -16.376 6.126 22.944 hybrid contribution -0.173 1.011 -0.748 1.269 sum 14.683 -15.365 5.378 21.923 Atomic orbital electron populations 1.21743 0.93065 1.04168 1.01470 1.20181 0.96903 0.83676 1.06302 1.26640 0.99539 1.01756 0.82938 1.74618 1.18382 0.93388 1.24750 1.85263 1.60504 1.27099 1.25212 1.28928 0.95614 0.96873 0.81980 1.21077 0.88031 0.84613 0.98817 1.88004 1.33180 1.36168 1.74376 1.22403 0.93852 0.86514 0.99138 1.21222 0.91194 0.81698 0.78165 1.90683 1.35036 1.70670 1.51569 1.46110 1.13124 1.22632 1.53176 1.18329 0.82304 0.88708 0.93962 0.98877 1.21910 1.02149 0.99317 0.96000 1.21537 1.02618 1.25260 1.08918 0.90237 1.25857 0.94566 0.97987 1.00473 1.70067 1.05846 1.39672 1.40310 0.85357 0.77583 0.78392 0.78749 1.19503 1.21558 1.18551 1.71915 1.17076 1.03046 1.30082 0.93552 0.88175 0.93543 0.86894 0.87257 0.84761 0.85170 0.85284 0.85899 0.75277 0.91671 0.97191 0.93547 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.89 71.98 0.71 -1.68 16 2 C -0.03 -0.52 6.56 29.85 0.20 -0.32 16 3 C 0.16 4.04 7.47 138.47 1.03 5.07 16 4 N -0.40 -10.91 12.16 -60.33 -0.73 -11.65 16 5 O 0.08 1.99 11.31 74.87 0.85 2.83 16 6 C 0.19 4.42 8.14 88.38 0.72 5.14 16 7 C 0.15 2.42 6.56 71.23 0.47 2.88 16 8 O -0.40 -10.77 9.86 -129.94 -1.28 -12.05 16 9 C 0.06 1.31 6.42 71.24 0.46 1.77 16 10 C 0.49 18.79 7.87 87.66 0.69 19.48 16 11 O -0.60 -30.83 16.16 16.01 0.26 -30.58 16 12 N -0.70 -27.13 5.07 -446.09 -2.26 -29.40 16 13 C 0.27 13.87 2.56 44.25 0.11 13.98 16 14 H -0.01 -0.41 7.58 -2.39 -0.02 -0.43 16 15 C -0.13 -6.82 9.26 71.98 0.67 -6.15 16 16 C -0.55 -28.10 8.73 25.60 0.22 -27.88 16 17 H 0.08 3.71 7.74 -2.91 -0.02 3.69 16 18 C 0.01 0.58 5.30 84.65 0.45 1.03 16 19 N -0.92 -52.94 11.32 21.45 0.24 -52.70 16 20 Si 0.97 41.18 29.54 68.60 2.03 43.21 16 21 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 22 H -0.29 -12.33 7.11 99.48 0.71 -11.63 16 23 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 24 N -0.49 -12.76 11.55 -303.21 -3.50 -16.26 16 25 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.13 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.12 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.41 12.24 8.54 -92.71 -0.79 11.44 16 35 H 0.06 3.63 6.07 -2.39 -0.01 3.62 16 36 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -80.75 334.85 1.61 -79.14 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.29 Total: 14.12 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 5.73 Total: 13.32 kcal Atomic # 7 Polarization: -103.75 SS G_CDS: -6.25 Total: -110.00 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -0.18 Total: -39.79 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -80.75 1.61 -79.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443782540.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.008 kcal (2) G-P(sol) polarization free energy of solvation -80.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds