Wall clock time and date at job start Tue Mar 31 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42906 * 109.46752 * 2 1 4 4 C 1.35731 * 116.99723 * 180.02562 * 3 2 1 5 5 C 1.41852 * 126.78554 * 180.30337 * 4 3 2 6 6 C 1.36667 * 103.81258 * 180.11590 * 5 4 3 7 7 C 1.47542 * 126.88111 * 179.87498 * 6 5 4 8 8 O 1.21576 * 119.99923 * 359.71261 * 7 6 5 9 9 N 1.34778 * 119.99973 * 179.71227 * 7 6 5 10 10 C 1.46499 * 119.99771 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47391 * 34.99730 * 10 9 7 12 12 C 1.53002 * 109.46799 * 274.99826 * 10 9 7 13 13 C 1.53000 * 109.46840 * 155.00060 * 10 9 7 14 14 N 1.46504 * 109.47054 * 304.99499 * 13 10 9 15 15 C 1.36938 * 119.99997 * 180.02562 * 14 13 10 16 16 H 1.08000 * 119.99654 * 359.97438 * 15 14 13 17 17 C 1.38811 * 119.99791 * 180.02562 * 15 14 13 18 18 N 1.31617 * 120.00176 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99432 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47102 * 60.00436 * 19 17 15 21 21 H 1.48510 * 109.46582 * 180.02562 * 19 17 15 22 22 H 1.48491 * 109.47368 * 299.99795 * 19 17 15 23 23 O 1.34658 * 106.23718 * 359.61603 * 6 5 4 24 24 N 1.20876 * 111.63736 * 0.25894 * 23 6 5 25 25 H 1.09005 * 109.46773 * 59.99963 * 1 2 3 26 26 H 1.08996 * 109.46729 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46925 * 300.00253 * 1 2 3 28 28 H 1.08997 * 109.46925 * 240.00252 * 2 1 3 29 29 H 1.08996 * 109.47015 * 119.99978 * 2 1 3 30 30 H 1.07998 * 128.09508 * 359.97438 * 5 4 3 31 31 H 0.96998 * 119.99599 * 359.97438 * 9 7 6 32 32 H 1.09000 * 109.46986 * 180.02562 * 12 10 9 33 33 H 1.09002 * 109.47075 * 299.99543 * 12 10 9 34 34 H 1.08996 * 109.47407 * 60.00500 * 12 10 9 35 35 H 1.08991 * 109.47625 * 64.99762 * 13 10 9 36 36 H 1.09002 * 109.46642 * 184.99913 * 13 10 9 37 37 H 0.97000 * 119.99700 * 0.02562 * 14 13 10 38 38 H 0.97004 * 119.99907 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3520 1.5252 -0.0005 5 6 4.0452 2.7628 0.0054 6 6 5.3625 2.3989 -0.0008 7 6 6.5303 3.3007 -0.0009 8 8 6.3679 4.5055 -0.0005 9 7 7.7770 2.7887 -0.0016 10 6 8.9365 3.6841 -0.0012 11 1 8.7097 4.5721 0.5889 12 6 9.2630 4.0963 -1.4380 13 6 10.1393 2.9607 0.6076 14 7 9.7864 2.4615 1.9390 15 6 10.7114 1.7767 2.6810 16 1 11.7011 1.6043 2.2845 17 6 10.3768 1.3033 3.9422 18 7 9.1705 1.5131 4.4252 19 14 11.6386 0.3686 4.9540 20 1 12.8186 1.2364 5.1980 21 1 11.0370 -0.0265 6.2530 22 1 12.0628 -0.8476 4.2153 23 8 5.3812 1.0524 -0.0007 24 7 4.2639 0.5912 -0.0006 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3632 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.6293 3.7595 0.0108 31 1 7.9065 1.8274 -0.0015 32 1 10.1259 4.7622 -1.4378 33 1 9.4899 3.2084 -2.0281 34 1 8.4061 4.6118 -1.8718 35 1 10.4215 2.1238 -0.0311 36 1 10.9767 3.6536 0.6897 37 1 8.8974 2.6161 2.2949 38 1 8.9366 1.1819 5.3064 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497856572.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:48 Heat of formation + Delta-G solvation = 1.781535 kcal Electronic energy + Delta-G solvation = -21943.652545 eV Core-core repulsion = 18404.803583 eV Total energy + Delta-G solvation = -3538.848962 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.97808 -39.64226 -39.12774 -36.34827 -33.81381 -33.50618 -32.31904 -31.45190 -30.98077 -29.88246 -25.77017 -24.79749 -23.52936 -23.25842 -22.53545 -21.01086 -20.37985 -19.05864 -17.97420 -17.15253 -16.98245 -16.16269 -16.10795 -15.93187 -14.84583 -14.82976 -14.56950 -14.02877 -13.76807 -13.55671 -13.34250 -13.29036 -12.97937 -12.45313 -12.27183 -12.20695 -12.13898 -11.71600 -11.38939 -11.37900 -10.94107 -10.82332 -10.53803 -10.20264 -10.08495 -9.87406 -9.76050 -9.40527 -8.96130 -8.88495 -6.98542 -5.78826 -3.09321 0.78502 2.05278 2.46579 2.63527 3.10396 3.42772 3.45702 3.47796 3.48853 4.02739 4.55983 4.59229 4.62058 4.73902 4.90518 4.95837 5.12309 5.20830 5.33519 5.40415 5.45175 5.51855 5.59510 5.60718 5.69813 5.93437 6.02860 6.13024 6.32330 6.36697 6.61328 6.77646 6.81658 7.52037 7.66659 8.01875 8.16843 8.38541 9.50382 10.05120 10.40065 11.43267 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.015306 B = 0.004072 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.893838 B = 6874.991031 C = 8315.042488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.282 6.282 4 C 0.204 3.796 5 C -0.160 4.160 6 C -0.047 4.047 7 C 0.605 3.395 8 O -0.517 6.517 9 N -0.691 5.691 10 C 0.132 3.868 11 H 0.092 0.908 12 C -0.159 4.159 13 C 0.144 3.856 14 N -0.732 5.732 15 C -0.245 4.245 16 H 0.071 0.929 17 C -0.010 4.010 18 N -0.930 5.930 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 O 0.123 5.877 24 N -0.390 5.390 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.189 0.811 31 H 0.412 0.588 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.027 0.973 36 H 0.037 0.963 37 H 0.386 0.614 38 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.487 -0.149 -12.678 17.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.189 6.189 4 C 0.007 3.993 5 C -0.183 4.183 6 C -0.113 4.113 7 C 0.388 3.612 8 O -0.394 6.394 9 N -0.341 5.341 10 C 0.028 3.972 11 H 0.111 0.889 12 C -0.218 4.218 13 C 0.015 3.985 14 N -0.378 5.378 15 C -0.376 4.376 16 H 0.089 0.911 17 C -0.207 4.207 18 N -0.578 5.578 19 Si 0.739 3.261 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.212 1.212 23 O 0.056 5.944 24 N -0.113 5.113 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.206 0.794 31 H 0.248 0.752 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.055 0.945 37 H 0.220 0.780 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.724 -0.491 -12.608 17.920 hybrid contribution 0.189 -0.463 0.864 0.998 sum -12.535 -0.954 -11.745 17.204 Atomic orbital electron populations 1.21793 0.92200 1.03176 1.03639 1.22840 0.95845 0.80608 1.02578 1.86201 1.13056 1.30224 1.89433 1.21817 0.85792 0.90527 1.01189 1.22122 0.90090 0.99161 1.06961 1.24150 0.96654 0.84316 1.06198 1.16449 0.81228 0.85981 0.77586 1.90852 1.84955 1.12814 1.50754 1.45936 1.04590 1.11742 1.71840 1.21416 0.85084 0.93855 0.96835 0.88948 1.22119 1.01996 1.01682 0.95973 1.21006 0.93319 0.95931 0.88196 1.42353 1.14922 1.66727 1.13756 1.19154 0.93953 1.27451 0.97083 0.91115 1.24757 0.96749 1.01483 0.97694 1.69654 1.18761 1.50870 1.18512 0.86259 0.80495 0.79753 0.79582 1.21253 1.21712 1.21224 1.84987 1.22682 1.18611 1.68092 1.74007 0.90453 1.22188 1.24649 0.91412 0.89977 0.91295 0.91564 0.91392 0.79400 0.75156 0.91249 0.92284 0.92255 0.95505 0.94502 0.78014 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.66 16 2 C 0.06 0.56 6.38 37.16 0.24 0.79 16 3 O -0.28 -3.59 10.21 -18.90 -0.19 -3.78 16 4 C 0.20 2.90 8.00 -16.72 -0.13 2.77 16 5 C -0.16 -2.22 10.97 -38.77 -0.43 -2.65 16 6 C -0.05 -0.70 7.29 -36.36 -0.26 -0.97 16 7 C 0.61 9.78 7.78 -12.47 -0.10 9.68 16 8 O -0.52 -9.40 16.57 5.30 0.09 -9.31 16 9 N -0.69 -10.79 4.51 -54.85 -0.25 -11.04 16 10 C 0.13 2.08 2.73 -67.93 -0.19 1.89 16 11 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 12 C -0.16 -1.99 9.48 37.16 0.35 -1.64 16 13 C 0.14 2.66 5.82 -4.04 -0.02 2.64 16 14 N -0.73 -17.75 5.43 -59.91 -0.33 -18.08 16 15 C -0.25 -6.67 9.99 -15.06 -0.15 -6.82 16 16 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 17 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 18 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 19 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 O 0.12 1.89 11.03 15.51 0.17 2.06 16 24 N -0.39 -5.95 11.50 30.47 0.35 -5.60 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.19 2.22 8.06 -52.49 -0.42 1.80 16 31 H 0.41 6.27 8.43 -40.82 -0.34 5.93 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.39 10.01 7.33 -40.82 -0.30 9.71 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 336.37 15.07 5.07 5.07 Total: -1.00 -31.69 336.37 -5.02 -36.72 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -5.23 Total: 9.36 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -0.40 Total: 4.65 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: 0.50 Total: -61.88 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.07 Total: -11.04 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.69 -5.02 -36.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497856572.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.497 kcal (2) G-P(sol) polarization free energy of solvation -31.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds