Wall clock time and date at job start Tue Mar 31 2020 05:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47715 * 2 1 4 4 C 1.50695 * 109.47077 * 120.01113 * 2 1 3 5 5 H 1.07994 * 120.01002 * 119.99671 * 4 2 1 6 6 C 1.37880 * 119.99519 * 299.99195 * 4 2 1 7 7 N 1.31513 * 120.00182 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00168 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46739 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47271 * 120.00016 * 8 6 4 11 11 H 1.48497 * 109.47016 * 240.00330 * 8 6 4 12 12 C 1.50704 * 109.46900 * 240.00175 * 2 1 3 13 13 O 1.21280 * 120.00311 * 240.00493 * 12 2 1 14 14 N 1.34781 * 119.99674 * 59.99990 * 12 2 1 15 15 C 1.48367 * 127.98843 * 0.08712 * 14 12 2 16 16 C 1.54273 * 104.79392 * 140.05281 * 15 14 12 17 17 H 1.09002 * 112.68282 * 147.07554 * 16 15 14 18 18 C 1.54387 * 108.77876 * 273.50194 * 16 15 14 19 19 O 1.44376 * 104.92771 * 87.05256 * 18 16 15 20 20 C 1.46077 * 105.41287 * 40.84571 * 19 18 16 21 21 C 1.54391 * 104.08928 * 319.24201 * 20 19 18 22 22 C 1.50700 * 112.71083 * 147.02826 * 21 20 19 23 23 O 1.20825 * 119.99892 * 242.56239 * 22 21 20 24 24 O 1.34227 * 119.99960 * 62.55900 * 22 21 20 25 25 C 1.48095 * 127.84680 * 179.97438 * 14 12 2 26 26 H 1.08998 * 109.47615 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46940 * 300.00086 * 1 2 3 28 28 H 1.09000 * 109.46742 * 59.98987 * 1 2 3 29 29 H 0.96997 * 120.00151 * 179.97438 * 7 6 4 30 30 H 1.08998 * 110.36201 * 21.22721 * 15 14 12 31 31 H 1.09001 * 110.46201 * 258.93743 * 15 14 12 32 32 H 1.09000 * 110.34805 * 205.91440 * 18 16 15 33 33 H 1.09000 * 110.34947 * 328.08916 * 18 16 15 34 34 H 1.09004 * 110.97792 * 200.54004 * 20 19 18 35 35 H 1.08998 * 110.52439 * 77.71882 * 20 19 18 36 36 H 0.96704 * 116.99857 * 180.02562 * 24 22 21 37 37 H 1.09002 * 110.37720 * 101.05389 * 25 14 12 38 38 H 1.09002 * 110.37908 * 338.81424 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7106 1.2303 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2396 2.4826 7 7 0.9429 0.8294 2.6034 8 14 2.3225 -1.1200 4.0078 9 1 3.1482 -2.2861 3.6035 10 1 3.1473 -0.1864 4.8160 11 1 1.1677 -1.5870 4.8163 12 6 2.0323 -0.7104 -1.2305 13 8 2.7295 -1.6965 -1.1194 14 7 1.7066 -0.2498 -2.4546 15 6 0.8743 0.9304 -2.7946 16 6 1.5865 1.5810 -3.9986 17 1 0.8914 2.0515 -4.6941 18 6 2.6695 2.5474 -3.4725 19 8 3.8428 1.7264 -3.2886 20 6 3.8764 0.8328 -4.4436 21 6 2.4010 0.4260 -4.6471 22 6 2.0527 0.2060 -6.0967 23 8 1.2245 0.9043 -6.6317 24 8 2.6627 -0.7657 -6.7935 25 6 2.1007 -0.8062 -3.7693 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 0.7084 1.1606 3.4844 30 1 0.8387 1.6240 -1.9546 31 1 -0.1328 0.6192 -3.0720 32 1 2.8661 3.3309 -4.2043 33 1 2.3587 2.9849 -2.5239 34 1 4.4873 -0.0465 -4.2391 35 1 4.2494 1.3584 -5.3227 36 1 2.4065 -0.8683 -7.7203 37 1 1.2826 -1.3862 -4.1966 38 1 2.9916 -1.4259 -3.6676 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573575997.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:55 Heat of formation + Delta-G solvation = -155.419120 kcal Electronic energy + Delta-G solvation = -23680.292174 eV Core-core repulsion = 20102.333729 eV Total energy + Delta-G solvation = -3577.958445 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.46831 -39.65882 -38.18309 -36.44190 -35.56967 -33.79466 -31.92971 -30.89342 -30.19883 -26.14576 -25.60114 -25.11275 -24.23687 -22.36874 -21.51015 -19.79701 -18.85642 -18.30617 -17.43378 -16.41285 -16.19005 -16.01756 -15.45990 -15.26067 -14.87046 -14.68304 -14.35703 -14.03092 -13.54565 -13.28616 -12.97800 -12.69980 -12.42907 -12.22327 -11.88275 -11.60466 -11.49682 -11.45394 -11.14855 -10.99600 -10.97197 -10.72586 -10.64088 -10.52715 -10.24714 -9.94613 -9.88305 -8.94692 -8.64592 -8.32133 -8.21726 -6.01906 -4.04488 1.82271 2.57703 3.34014 3.41284 3.47656 3.57396 3.64461 3.84045 3.84878 4.36225 4.49184 4.56352 4.84648 4.90335 4.95681 5.29885 5.31909 5.39650 5.49087 5.55467 5.58727 5.70329 5.74021 5.80438 5.88968 6.08100 6.14303 6.57348 6.63232 6.71034 6.85846 6.96354 7.49115 7.55567 7.76191 8.01336 8.13576 8.39702 9.04249 9.18956 9.60802 11.05870 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.030732 B = 0.004736 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.878383 B = 5910.536556 C = 6020.925689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.037 3.963 3 H 0.053 0.947 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.549 3.451 13 O -0.541 6.541 14 N -0.625 5.625 15 C 0.112 3.888 16 C -0.124 4.124 17 H 0.122 0.878 18 C 0.052 3.948 19 O -0.354 6.354 20 C 0.070 3.930 21 C -0.108 4.108 22 C 0.509 3.491 23 O -0.507 6.507 24 O -0.508 6.508 25 C 0.126 3.874 26 H 0.030 0.970 27 H 0.093 0.907 28 H 0.017 0.983 29 H 0.260 0.740 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.412 0.588 37 H 0.066 0.934 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.439 2.993 -17.887 18.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.016 3.984 3 H 0.071 0.929 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.211 1.211 12 C 0.342 3.658 13 O -0.416 6.416 14 N -0.362 5.362 15 C -0.011 4.011 16 C -0.143 4.143 17 H 0.140 0.860 18 C -0.025 4.025 19 O -0.272 6.272 20 C -0.007 4.007 21 C -0.111 4.111 22 C 0.350 3.650 23 O -0.395 6.395 24 O -0.320 6.320 25 C 0.002 3.998 26 H 0.049 0.951 27 H 0.112 0.888 28 H 0.036 0.964 29 H 0.070 0.930 30 H 0.116 0.884 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.082 0.918 36 H 0.271 0.729 37 H 0.084 0.916 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.829 2.740 -17.060 17.298 hybrid contribution -0.165 -0.419 -0.202 0.494 sum 0.664 2.321 -17.262 17.430 Atomic orbital electron populations 1.21868 0.96554 0.99921 1.01209 1.18826 0.94106 0.96806 0.88641 0.92892 1.21183 1.30864 1.12781 0.88932 0.90760 1.24934 0.95109 0.95069 0.99074 1.69873 1.37190 1.23146 1.23413 0.86401 0.78607 0.79807 0.82473 1.19559 1.21038 1.21080 1.21815 0.77797 0.83814 0.82400 1.90545 1.38295 1.27186 1.85545 1.49238 1.52832 1.29791 1.04382 1.22467 0.93752 0.88696 0.96235 1.23680 0.98425 0.94496 0.97725 0.85994 1.23507 0.84270 0.92684 1.02073 1.89520 1.44764 1.50392 1.42478 1.23602 0.92107 0.95099 0.89860 1.22723 0.99730 1.00297 0.88325 1.22547 0.77519 0.76488 0.88480 1.90713 1.31919 1.45996 1.70828 1.84559 1.64743 1.52792 1.29861 1.21953 1.01685 0.92422 0.83728 0.95117 0.88822 0.96379 0.93037 0.88402 0.91063 0.92059 0.87731 0.87447 0.91793 0.72911 0.91563 0.88787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.72 37.16 0.32 -2.82 16 2 C 0.04 0.93 1.97 -92.92 -0.18 0.74 16 3 H 0.05 1.38 7.96 -51.93 -0.41 0.96 16 4 C -0.50 -14.24 8.37 -34.44 -0.29 -14.53 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.05 11.32 55.43 0.63 -24.42 16 8 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 9 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.55 12.76 7.26 -10.98 -0.08 12.68 16 13 O -0.54 -14.36 15.72 5.56 0.09 -14.27 16 14 N -0.63 -11.22 3.16 -169.32 -0.53 -11.76 16 15 C 0.11 1.61 4.68 -2.35 -0.01 1.60 16 16 C -0.12 -1.49 3.76 -87.90 -0.33 -1.82 16 17 H 0.12 1.33 6.97 -51.93 -0.36 0.97 16 18 C 0.05 0.63 7.05 37.88 0.27 0.90 16 19 O -0.35 -5.38 11.54 -35.23 -0.41 -5.79 16 20 C 0.07 0.86 6.74 37.89 0.26 1.12 16 21 C -0.11 -1.31 1.02 -152.95 -0.16 -1.47 16 22 C 0.51 5.51 7.10 36.01 0.26 5.76 16 23 O -0.51 -6.50 16.39 -18.75 -0.31 -6.81 16 24 O -0.51 -4.11 13.42 -39.25 -0.53 -4.63 16 25 C 0.13 1.86 6.03 -2.51 -0.02 1.84 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 28 H 0.02 0.33 5.36 -51.93 -0.28 0.05 16 29 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.10 1.46 5.94 -51.93 -0.31 1.15 16 31 H 0.07 0.93 8.03 -51.93 -0.42 0.51 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.10 1.28 7.51 -51.93 -0.39 0.89 16 34 H 0.11 1.30 7.50 -51.93 -0.39 0.91 16 35 H 0.06 0.64 7.99 -51.93 -0.41 0.23 16 36 H 0.41 1.42 9.10 45.56 0.41 1.84 16 37 H 0.07 0.90 7.98 -51.93 -0.41 0.48 16 38 H 0.09 1.46 7.22 -51.93 -0.38 1.08 16 LS Contribution 309.40 15.07 4.66 4.66 Total: -1.00 -34.17 309.40 -5.47 -39.64 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -4.00 Total: 0.96 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -0.06 Total: 5.54 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.09 Total: -36.18 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -1.15 Total: -31.50 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.17 -5.47 -39.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573575997.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.778 kcal (2) G-P(sol) polarization free energy of solvation -34.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds