Wall clock time and date at job start Tue Mar 31 2020 05:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.90744 * 2 1 4 4 C 1.55307 * 110.84900 * 236.41232 * 2 1 3 5 5 C 1.54950 * 100.98071 * 207.65742 * 4 2 1 6 6 H 1.08997 * 110.30472 * 277.54893 * 5 4 2 7 7 C 1.50696 * 110.30563 * 155.38013 * 5 4 2 8 8 O 1.21290 * 119.99943 * 249.26914 * 7 5 4 9 9 N 1.34777 * 119.99966 * 69.27276 * 7 5 4 10 10 C 1.37096 * 119.99970 * 184.65544 * 9 7 5 11 11 H 1.08008 * 119.99972 * 220.82726 * 10 9 7 12 12 C 1.38951 * 120.00168 * 40.82696 * 10 9 7 13 13 N 1.31413 * 119.99434 * 18.60945 * 12 10 9 14 14 Si 1.86798 * 119.99911 * 198.61418 * 12 10 9 15 15 H 1.48497 * 109.47111 * 90.00213 * 14 12 10 16 16 H 1.48508 * 109.46700 * 209.99817 * 14 12 10 17 17 H 1.48499 * 109.47460 * 329.99469 * 14 12 10 18 18 C 1.46499 * 120.00161 * 4.66142 * 9 7 5 19 19 C 1.53004 * 117.50235 * 194.20981 * 18 9 7 20 20 C 1.53004 * 117.50459 * 125.54730 * 18 9 7 21 21 O 1.43761 * 105.07932 * 36.44124 * 5 4 2 22 22 C 1.43233 * 109.98400 * 335.57950 * 21 5 4 23 23 H 1.09007 * 109.90408 * 121.27374 * 22 21 5 24 24 C 1.50705 * 109.83240 * 242.19689 * 22 21 5 25 25 O 1.20833 * 119.99434 * 3.13858 * 24 22 21 26 26 O 1.34223 * 120.00554 * 183.13810 * 24 22 21 27 27 H 1.08994 * 109.46889 * 183.58744 * 1 2 3 28 28 H 1.09005 * 109.47035 * 303.58695 * 1 2 3 29 29 H 1.09001 * 109.46730 * 63.58385 * 1 2 3 30 30 H 1.09002 * 111.12344 * 325.59925 * 4 2 1 31 31 H 1.09000 * 111.12141 * 89.71616 * 4 2 1 32 32 H 0.97003 * 119.99506 * 184.52195 * 13 12 10 33 33 H 1.09005 * 115.54757 * 339.87523 * 18 9 7 34 34 H 1.09001 * 117.49710 * 359.97438 * 19 18 9 35 35 H 1.08999 * 117.50131 * 145.01872 * 19 18 9 36 36 H 1.09000 * 117.49834 * 214.98441 * 20 18 9 37 37 H 1.09004 * 117.49409 * 359.97344 * 20 18 9 38 38 H 0.96698 * 117.00227 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0828 -0.8029 -1.2091 5 6 3.4469 -1.2784 -0.6487 6 1 4.1938 -0.4914 -0.7531 7 6 3.8983 -2.5273 -1.3612 8 8 3.9218 -3.5869 -0.7715 9 7 4.2758 -2.4667 -2.6536 10 6 4.5949 -3.6162 -3.3291 11 1 5.4378 -3.6295 -4.0043 12 6 3.8339 -4.7642 -3.1451 13 7 2.6259 -4.6769 -2.6352 14 14 4.5282 -6.4314 -3.6225 15 1 5.2445 -7.0199 -2.4625 16 1 3.4189 -7.3317 -4.0280 17 1 5.4727 -6.2680 -4.7567 18 6 4.3453 -1.1725 -3.3365 19 6 4.4505 -1.1838 -4.8629 20 6 5.6658 -0.8013 -4.0144 21 8 3.2044 -1.5554 0.7409 22 6 2.0794 -0.7981 1.2019 23 1 1.3102 -1.4703 1.5822 24 6 2.5127 0.1502 2.2901 25 8 3.6781 0.2203 2.6016 26 8 1.6042 0.9169 2.9134 27 1 -0.3633 -1.0256 0.0643 28 1 -0.3633 0.5685 0.8561 29 1 -0.3633 0.4572 -0.9204 30 1 1.4386 -1.6497 -1.4458 31 1 2.2179 -0.1600 -2.0788 32 1 2.1201 -5.4827 -2.4457 33 1 3.7714 -0.3674 -2.8776 34 1 4.4684 -2.1543 -5.3590 35 1 3.9462 -0.3860 -5.4081 36 1 5.9605 0.2480 -4.0017 37 1 6.4830 -1.5199 -3.9519 38 1 1.9299 1.5098 3.6043 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599871743.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:01 Heat of formation + Delta-G solvation = -124.647282 kcal Electronic energy + Delta-G solvation = -23588.062934 eV Core-core repulsion = 20011.438856 eV Total energy + Delta-G solvation = -3576.624078 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.67685 -39.25527 -37.90709 -36.06349 -35.93263 -33.51009 -32.73917 -31.27600 -29.94970 -27.19951 -25.41359 -23.60992 -21.79854 -21.58105 -20.96229 -20.79009 -19.21811 -18.26699 -17.18380 -16.70759 -16.06997 -15.78189 -15.61480 -14.83714 -14.68193 -14.24560 -13.93476 -13.58681 -13.43891 -13.09422 -12.96573 -12.71251 -12.24078 -11.80812 -11.76386 -11.52994 -11.28618 -11.24281 -10.92098 -10.91481 -10.82401 -10.77219 -10.53733 -10.36687 -10.17050 -10.04428 -9.75321 -9.45558 -8.70186 -7.95328 -7.06785 -6.12005 -3.87391 2.21338 2.81074 3.32960 3.39581 3.43493 3.83781 4.05025 4.31767 4.42271 4.69835 4.82380 4.86758 5.02208 5.23803 5.30404 5.31477 5.38191 5.48044 5.51704 5.66528 5.74276 5.78768 5.80913 5.92973 5.97010 6.09615 6.17291 6.22198 6.40022 6.44959 6.49331 6.70942 6.92543 7.09569 7.60726 7.92950 8.23286 9.01497 9.15499 9.62202 10.24894 10.95393 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.020158 B = 0.005698 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.665681 B = 4912.632485 C = 5385.051646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 H 0.086 0.914 4 C -0.136 4.136 5 C 0.065 3.935 6 H 0.080 0.920 7 C 0.488 3.512 8 O -0.511 6.511 9 N -0.424 5.424 10 C -0.342 4.342 11 H 0.080 0.920 12 C 0.070 3.930 13 N -0.832 5.832 14 Si 0.909 3.091 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.066 3.934 19 C -0.176 4.176 20 C -0.206 4.206 21 O -0.319 6.319 22 C 0.094 3.906 23 H 0.120 0.880 24 C 0.464 3.536 25 O -0.498 6.498 26 O -0.516 6.516 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.265 0.735 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.203 12.862 2.743 14.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 H 0.105 0.895 4 C -0.174 4.174 5 C 0.004 3.996 6 H 0.097 0.903 7 C 0.274 3.726 8 O -0.386 6.386 9 N -0.147 5.147 10 C -0.468 4.468 11 H 0.098 0.902 12 C -0.140 4.140 13 N -0.465 5.465 14 Si 0.736 3.264 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.040 4.040 19 C -0.214 4.214 20 C -0.245 4.245 21 O -0.236 6.236 22 C 0.034 3.966 23 H 0.137 0.863 24 C 0.305 3.695 25 O -0.384 6.384 26 O -0.329 6.329 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -5.076 11.773 2.988 13.164 hybrid contribution 0.468 -0.134 0.213 0.531 sum -4.608 11.639 3.201 12.921 Atomic orbital electron populations 1.21734 0.92557 1.02987 1.02488 1.22655 0.97925 0.99370 0.93056 0.89527 1.23412 0.96069 1.00780 0.97117 1.23082 0.97146 0.98103 0.81293 0.90273 1.19310 0.83068 0.88352 0.81898 1.90550 1.53065 1.30270 1.64751 1.42660 1.61771 1.03442 1.06792 1.18878 1.12178 0.87915 1.27841 0.90231 1.25143 0.93407 0.99659 0.95775 1.69848 1.08268 1.29474 1.38957 0.86249 0.78527 0.83061 0.78530 1.20337 1.21322 1.19863 1.21871 0.98931 0.90106 0.93073 1.23110 1.01245 1.03050 0.94035 1.23298 0.93484 1.00696 1.07021 1.88681 1.47372 1.62893 1.24611 1.22328 0.90446 0.91889 0.91929 0.86286 1.24178 0.83947 0.79313 0.82108 1.90732 1.19784 1.64923 1.62969 1.84529 1.43678 1.52853 1.51799 0.91635 0.91724 0.91635 0.88203 0.89127 0.92527 0.87579 0.87418 0.89868 0.89780 0.88858 0.73511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.17 37.16 0.34 -1.13 16 2 C -0.11 -1.45 3.11 -88.67 -0.28 -1.73 16 3 H 0.09 1.00 7.84 -51.93 -0.41 0.60 16 4 C -0.14 -2.21 5.43 -24.48 -0.13 -2.34 16 5 C 0.06 1.32 2.91 -26.86 -0.08 1.25 16 6 H 0.08 1.49 7.66 -51.93 -0.40 1.09 16 7 C 0.49 12.60 6.22 -10.99 -0.07 12.54 16 8 O -0.51 -15.68 14.27 -13.71 -0.20 -15.87 16 9 N -0.42 -10.47 2.89 -107.72 -0.31 -10.78 16 10 C -0.34 -9.21 7.73 -14.93 -0.12 -9.33 16 11 H 0.08 2.08 7.36 -52.48 -0.39 1.70 16 12 C 0.07 1.96 4.38 -17.47 -0.08 1.89 16 13 N -0.83 -24.14 11.59 55.50 0.64 -23.50 16 14 Si 0.91 21.90 29.59 -169.99 -5.03 16.87 16 15 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 18 C 0.07 1.28 5.81 -67.93 -0.39 0.89 16 19 C -0.18 -3.07 9.83 -26.69 -0.26 -3.33 16 20 C -0.21 -3.50 10.10 -26.69 -0.27 -3.77 16 21 O -0.32 -6.82 9.83 -64.42 -0.63 -7.45 16 22 C 0.09 1.49 3.67 -27.16 -0.10 1.39 16 23 H 0.12 1.72 7.75 -51.92 -0.40 1.32 16 24 C 0.46 6.89 7.52 36.01 0.27 7.16 16 25 O -0.50 -9.29 17.28 -25.41 -0.44 -9.73 16 26 O -0.52 -5.33 13.42 -39.24 -0.53 -5.86 16 27 H 0.06 0.73 8.06 -51.93 -0.42 0.31 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.10 1.87 7.95 -51.93 -0.41 1.46 16 31 H 0.09 1.27 6.35 -51.93 -0.33 0.94 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.11 1.76 4.76 -51.93 -0.25 1.51 16 34 H 0.11 2.11 7.02 -51.93 -0.36 1.75 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.09 1.73 7.98 -51.93 -0.41 1.31 16 38 H 0.41 2.41 9.10 45.56 0.41 2.82 16 LS Contribution 318.79 15.07 4.80 4.80 Total: -1.00 -36.01 318.79 -7.04 -43.05 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -4.19 Total: 4.99 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -1.16 Total: 3.47 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.33 Total: -34.28 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -1.79 Total: -38.92 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -36.01 -7.04 -43.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599871743.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.595 kcal (2) G-P(sol) polarization free energy of solvation -36.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds