Wall clock time and date at job start Tue Mar 31 2020 05:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.90744 * 2 1 4 4 C 1.55307 * 110.84900 * 236.41232 * 2 1 3 5 5 C 1.54950 * 100.98071 * 207.65742 * 4 2 1 6 6 H 1.08997 * 110.30472 * 277.54893 * 5 4 2 7 7 C 1.50696 * 110.30563 * 155.38013 * 5 4 2 8 8 O 1.21290 * 119.99943 * 249.26914 * 7 5 4 9 9 N 1.34777 * 119.99966 * 69.27276 * 7 5 4 10 10 C 1.37096 * 119.99970 * 184.65544 * 9 7 5 11 11 H 1.08008 * 119.99972 * 220.82726 * 10 9 7 12 12 C 1.38951 * 120.00168 * 40.82696 * 10 9 7 13 13 N 1.31413 * 119.99434 * 18.60945 * 12 10 9 14 14 Si 1.86798 * 119.99911 * 198.61418 * 12 10 9 15 15 H 1.48497 * 109.47111 * 90.00213 * 14 12 10 16 16 H 1.48508 * 109.46700 * 209.99817 * 14 12 10 17 17 H 1.48499 * 109.47460 * 329.99469 * 14 12 10 18 18 C 1.46499 * 120.00161 * 4.66142 * 9 7 5 19 19 C 1.53004 * 117.50235 * 194.20981 * 18 9 7 20 20 C 1.53004 * 117.50459 * 125.54730 * 18 9 7 21 21 O 1.43761 * 105.07932 * 36.44124 * 5 4 2 22 22 C 1.43233 * 109.98400 * 335.57950 * 21 5 4 23 23 H 1.09007 * 109.90408 * 121.27374 * 22 21 5 24 24 C 1.50705 * 109.83240 * 242.19689 * 22 21 5 25 25 O 1.20833 * 119.99434 * 3.13858 * 24 22 21 26 26 O 1.34223 * 120.00554 * 183.13810 * 24 22 21 27 27 H 1.08994 * 109.46889 * 183.58744 * 1 2 3 28 28 H 1.09005 * 109.47035 * 303.58695 * 1 2 3 29 29 H 1.09001 * 109.46730 * 63.58385 * 1 2 3 30 30 H 1.09002 * 111.12344 * 325.59925 * 4 2 1 31 31 H 1.09000 * 111.12141 * 89.71616 * 4 2 1 32 32 H 0.97003 * 119.99506 * 184.52195 * 13 12 10 33 33 H 1.09005 * 115.54757 * 339.87523 * 18 9 7 34 34 H 1.09001 * 117.49710 * 359.97438 * 19 18 9 35 35 H 1.08999 * 117.50131 * 145.01872 * 19 18 9 36 36 H 1.09000 * 117.49834 * 214.98441 * 20 18 9 37 37 H 1.09004 * 117.49409 * 359.97344 * 20 18 9 38 38 H 0.96698 * 117.00227 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0828 -0.8029 -1.2091 5 6 3.4469 -1.2784 -0.6487 6 1 4.1938 -0.4914 -0.7531 7 6 3.8983 -2.5273 -1.3612 8 8 3.9218 -3.5869 -0.7715 9 7 4.2758 -2.4667 -2.6536 10 6 4.5949 -3.6162 -3.3291 11 1 5.4378 -3.6295 -4.0043 12 6 3.8339 -4.7642 -3.1451 13 7 2.6259 -4.6769 -2.6352 14 14 4.5282 -6.4314 -3.6225 15 1 5.2445 -7.0199 -2.4625 16 1 3.4189 -7.3317 -4.0280 17 1 5.4727 -6.2680 -4.7567 18 6 4.3453 -1.1725 -3.3365 19 6 4.4505 -1.1838 -4.8629 20 6 5.6658 -0.8013 -4.0144 21 8 3.2044 -1.5554 0.7409 22 6 2.0794 -0.7981 1.2019 23 1 1.3102 -1.4703 1.5822 24 6 2.5127 0.1502 2.2901 25 8 3.6781 0.2203 2.6016 26 8 1.6042 0.9169 2.9134 27 1 -0.3633 -1.0256 0.0643 28 1 -0.3633 0.5685 0.8561 29 1 -0.3633 0.4572 -0.9204 30 1 1.4386 -1.6497 -1.4458 31 1 2.2179 -0.1600 -2.0788 32 1 2.1201 -5.4827 -2.4457 33 1 3.7714 -0.3674 -2.8776 34 1 4.4684 -2.1543 -5.3590 35 1 3.9462 -0.3860 -5.4081 36 1 5.9605 0.2480 -4.0017 37 1 6.4830 -1.5199 -3.9519 38 1 1.9299 1.5098 3.6043 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599871743.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:01 Heat of formation + Delta-G solvation = -150.213049 kcal Electronic energy + Delta-G solvation = -23589.171549 eV Core-core repulsion = 20011.438856 eV Total energy + Delta-G solvation = -3577.732693 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.94787 -40.72716 -39.44197 -37.67518 -37.12765 -34.84413 -34.59739 -33.08308 -31.51706 -28.31031 -27.21539 -25.16651 -23.15580 -22.94335 -22.38506 -22.08824 -20.90057 -19.41578 -18.55959 -18.22033 -17.81038 -17.28945 -16.89545 -16.52449 -16.21837 -15.76179 -15.55948 -14.98291 -14.96385 -14.43137 -14.36072 -13.96363 -13.64897 -13.33738 -13.17588 -12.93730 -12.82254 -12.68967 -12.61652 -12.45558 -12.22824 -12.10704 -11.99674 -11.84727 -11.76479 -11.65588 -11.16568 -10.88577 -10.67504 -9.88629 -9.02043 -8.19977 -5.97839 1.06603 1.35734 1.44693 1.48364 1.70283 2.18147 2.31749 2.62340 3.08260 3.13103 3.30542 3.45032 3.70588 3.79724 3.96231 4.04317 4.09945 4.23115 4.28619 4.29325 4.42452 4.44426 4.61163 4.72663 4.92294 4.99283 5.00746 5.05654 5.18391 5.28387 5.39596 5.47119 5.50947 5.51921 5.74693 6.17964 6.95690 6.99327 7.19856 7.64751 8.30792 8.85595 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.020158 B = 0.005698 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.665681 B = 4912.632485 C = 5385.051646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 H 0.113 0.887 4 C -0.126 4.126 5 C 0.070 3.930 6 H 0.098 0.902 7 C 0.470 3.530 8 O -0.579 6.579 9 N -0.436 5.436 10 C -0.350 4.350 11 H 0.080 0.920 12 C 0.020 3.980 13 N -0.862 5.862 14 Si 0.963 3.037 15 H -0.296 1.296 16 H -0.280 1.280 17 H -0.253 1.253 18 C 0.036 3.964 19 C -0.167 4.167 20 C -0.188 4.188 21 O -0.362 6.362 22 C 0.079 3.921 23 H 0.126 0.874 24 C 0.480 3.520 25 O -0.543 6.543 26 O -0.494 6.494 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.258 0.742 33 H 0.138 0.862 34 H 0.079 0.921 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.071 0.929 38 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.971 16.040 1.997 17.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 H 0.131 0.869 4 C -0.164 4.164 5 C 0.009 3.991 6 H 0.115 0.885 7 C 0.258 3.742 8 O -0.460 6.460 9 N -0.157 5.157 10 C -0.478 4.478 11 H 0.098 0.902 12 C -0.186 4.186 13 N -0.497 5.497 14 Si 0.788 3.212 15 H -0.223 1.223 16 H -0.205 1.205 17 H -0.176 1.176 18 C -0.069 4.069 19 C -0.205 4.205 20 C -0.226 4.226 21 O -0.280 6.280 22 C 0.020 3.980 23 H 0.143 0.857 24 C 0.322 3.678 25 O -0.432 6.432 26 O -0.308 6.308 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.137 0.863 32 H 0.067 0.933 33 H 0.156 0.844 34 H 0.097 0.903 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.089 0.911 38 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -5.859 15.017 2.202 16.269 hybrid contribution 0.725 -1.041 0.484 1.358 sum -5.134 13.976 2.686 15.130 Atomic orbital electron populations 1.21747 0.90345 1.02859 1.04387 1.22666 0.99524 0.99375 0.89553 0.86897 1.23333 0.93165 1.00496 0.99417 1.22961 0.99662 0.95359 0.81093 0.88473 1.20328 0.82143 0.89496 0.82217 1.90488 1.55926 1.33149 1.66416 1.42864 1.60908 1.04926 1.06969 1.19102 1.11909 0.89437 1.27307 0.90190 1.25930 0.93771 1.02796 0.96143 1.69942 1.09379 1.29550 1.40875 0.85419 0.78273 0.79446 0.78052 1.22313 1.20549 1.17623 1.22271 1.01830 0.88412 0.94357 1.23157 1.01618 1.03043 0.92632 1.23341 0.91882 1.02453 1.04941 1.88620 1.49450 1.64901 1.25061 1.22631 0.89185 0.92604 0.93621 0.85708 1.23788 0.83440 0.78985 0.81569 1.90727 1.21671 1.66468 1.64377 1.84454 1.41952 1.52381 1.52054 0.92894 0.89643 0.89835 0.91376 0.86266 0.93275 0.84446 0.90255 0.85874 0.85616 0.91067 0.70721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.17 71.98 0.66 -1.75 16 2 C -0.09 -2.15 3.11 -9.53 -0.03 -2.18 16 3 H 0.11 2.09 7.84 -2.39 -0.02 2.07 16 4 C -0.13 -3.92 5.43 32.05 0.17 -3.74 16 5 C 0.07 2.85 2.91 30.51 0.09 2.94 16 6 H 0.10 3.54 7.66 -2.39 -0.02 3.52 16 7 C 0.47 25.08 6.22 87.66 0.55 25.62 16 8 O -0.58 -37.55 14.27 15.35 0.22 -37.33 16 9 N -0.44 -21.81 2.89 -613.11 -1.77 -23.58 16 10 C -0.35 -19.39 7.73 84.04 0.65 -18.74 16 11 H 0.08 4.28 7.36 -2.91 -0.02 4.26 16 12 C 0.02 1.15 4.38 84.93 0.37 1.53 16 13 N -0.86 -52.23 11.59 21.66 0.25 -51.98 16 14 Si 0.96 46.39 29.59 68.60 2.03 48.42 16 15 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 16 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 17 H -0.25 -11.14 7.11 99.48 0.71 -10.43 16 18 C 0.04 1.32 5.81 44.99 0.26 1.58 16 19 C -0.17 -5.39 9.83 30.62 0.30 -5.09 16 20 C -0.19 -5.86 10.10 30.62 0.31 -5.55 16 21 O -0.36 -15.83 9.83 -121.07 -1.19 -17.02 16 22 C 0.08 2.42 3.67 30.32 0.11 2.53 16 23 H 0.13 3.58 7.75 -2.38 -0.02 3.56 16 24 C 0.48 13.36 7.52 71.24 0.54 13.89 16 25 O -0.54 -19.83 17.28 28.31 0.49 -19.34 16 26 O -0.49 -8.48 13.42 -51.35 -0.69 -9.17 16 27 H 0.05 1.08 8.06 -2.39 -0.02 1.06 16 28 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 2.57 7.95 -2.39 -0.02 2.55 16 31 H 0.12 2.93 6.35 -2.39 -0.02 2.91 16 32 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 33 H 0.14 4.09 4.76 -2.38 -0.01 4.08 16 34 H 0.08 3.05 7.02 -2.39 -0.02 3.03 16 35 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 36 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 37 H 0.07 2.55 7.98 -2.39 -0.02 2.54 16 38 H 0.43 3.46 9.10 -74.06 -0.67 2.79 16 Total: -1.00 -84.66 318.79 3.74 -80.92 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.42 Total: 18.04 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 3.98 Total: 11.03 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -1.52 Total: -75.56 kcal Atomic # 8 Polarization: -81.69 SS G_CDS: -1.17 Total: -82.86 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -84.66 3.74 -80.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599871743.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.291 kcal (2) G-P(sol) polarization free energy of solvation -84.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds