Wall clock time and date at job start Tue Mar 31 2020 05:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47201 * 2 1 4 4 H 1.09000 * 109.46601 * 305.00253 * 3 2 1 5 5 C 1.53001 * 109.46971 * 185.00334 * 3 2 1 6 6 N 1.46504 * 109.46758 * 184.99766 * 5 3 2 7 7 C 1.34773 * 119.99640 * 179.97438 * 6 5 3 8 8 O 1.21616 * 120.00570 * 0.02562 * 7 6 5 9 9 C 1.47370 * 119.99900 * 180.02562 * 7 6 5 10 10 C 1.35915 * 126.41676 * 180.02562 * 9 7 6 11 11 O 1.34488 * 107.08924 * 179.73871 * 10 9 7 12 12 C 1.34206 * 108.24700 * 359.97438 * 11 10 9 13 13 O 1.35352 * 125.44255 * 179.97438 * 12 11 10 14 14 C 1.42902 * 117.00224 * 0.02962 * 13 12 11 15 15 N 1.30550 * 109.10769 * 0.02562 * 12 11 10 16 16 N 1.46496 * 109.47177 * 64.99751 * 3 2 1 17 17 C 1.36934 * 120.00355 * 275.00413 * 16 3 2 18 18 H 1.07997 * 119.99965 * 359.97438 * 17 16 3 19 19 C 1.38812 * 119.99824 * 179.97438 * 17 16 3 20 20 N 1.31614 * 120.00525 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99792 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47464 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47074 * 120.00176 * 21 19 17 24 24 H 1.48506 * 109.47108 * 239.99871 * 21 19 17 25 25 H 1.08999 * 109.46809 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46701 * 300.00019 * 1 2 3 27 27 H 1.09000 * 109.47371 * 59.99723 * 1 2 3 28 28 H 1.09001 * 109.46672 * 240.00402 * 2 1 3 29 29 H 1.08996 * 109.47300 * 119.99778 * 2 1 3 30 30 H 1.08994 * 109.47331 * 65.00284 * 5 3 2 31 31 H 1.08997 * 109.46746 * 304.99724 * 5 3 2 32 32 H 0.97001 * 120.00026 * 0.02562 * 6 5 3 33 33 H 1.08005 * 126.45115 * 359.73536 * 10 9 7 34 34 H 1.09002 * 109.46802 * 299.99760 * 14 13 12 35 35 H 1.08998 * 109.47052 * 59.99956 * 14 13 12 36 36 H 1.08998 * 109.47135 * 180.02562 * 14 13 12 37 37 H 0.97001 * 119.99701 * 95.00282 * 16 3 2 38 38 H 0.97000 * 120.00870 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1258 6 7 4.0631 2.8168 -0.0061 7 6 5.3858 3.0629 -0.0860 8 8 6.1657 2.1458 -0.2580 9 6 5.8870 4.4434 0.0350 10 6 7.1861 4.8384 -0.0260 11 8 7.2003 6.1748 0.1241 12 6 5.9343 6.5943 0.2741 13 8 5.5492 7.8797 0.4513 14 6 6.5808 8.8681 0.4796 15 7 5.1339 5.5642 0.2228 16 7 1.6525 2.0975 1.2517 17 6 0.4157 2.6735 1.3688 18 1 -0.2739 2.6452 0.5381 19 6 0.0483 3.2936 2.5551 20 7 0.8885 3.3276 3.5676 21 14 -1.6386 4.0799 2.7145 22 1 -2.3875 3.9069 1.4440 23 1 -2.3848 3.4304 3.8220 24 1 -1.4843 5.5283 3.0042 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8499 1.0377 -1.0961 31 1 3.9954 0.8311 0.6658 32 1 3.4411 3.5483 0.1315 33 1 8.0451 4.1994 -0.1682 34 1 7.2679 8.6528 1.2980 35 1 7.1246 8.8529 -0.4649 36 1 6.1369 9.8525 0.6279 37 1 2.2720 2.1232 1.9977 38 1 0.6317 3.7607 4.3967 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753481533.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:42 Heat of formation + Delta-G solvation = -35.171431 kcal Electronic energy + Delta-G solvation = -22197.681314 eV Core-core repulsion = 18657.229951 eV Total energy + Delta-G solvation = -3540.451363 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.46444 -39.32454 -38.82444 -36.65290 -34.93292 -33.62196 -32.29059 -30.22952 -29.67267 -27.95622 -27.61961 -24.61083 -23.33106 -22.59150 -21.98194 -20.37409 -19.95642 -18.85738 -17.57872 -17.37188 -16.91944 -16.44103 -15.58698 -15.40840 -15.38005 -15.15905 -14.46949 -13.93908 -13.81854 -13.44829 -13.13129 -12.93689 -12.61630 -12.52284 -12.15734 -12.08841 -11.41742 -11.04054 -10.90839 -10.83206 -10.71958 -10.70303 -10.39451 -10.14013 -9.99672 -9.87606 -9.47609 -8.89413 -8.81267 -8.54228 -6.96000 -5.73711 -3.02719 1.11395 1.84009 2.10292 2.67865 3.43857 3.46300 3.51545 3.53338 3.53538 4.55938 4.61453 4.65253 4.71890 4.86043 5.02662 5.21906 5.44523 5.46729 5.50769 5.61902 5.77204 5.97468 6.00310 6.01001 6.18336 6.47226 6.53850 6.58434 6.62499 6.64139 6.89338 7.06645 7.29144 7.48536 7.74177 7.97908 8.43027 8.49720 9.55337 10.10127 10.45716 11.48377 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.013750 B = 0.004994 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.832077 B = 5605.134969 C = 7299.229596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.163 3.837 4 H 0.055 0.945 5 C 0.113 3.887 6 N -0.689 5.689 7 C 0.597 3.403 8 O -0.551 6.551 9 C -0.038 4.038 10 C -0.007 4.007 11 O -0.229 6.229 12 C 0.377 3.623 13 O -0.242 6.242 14 C 0.025 3.975 15 N -0.443 5.443 16 N -0.721 5.721 17 C -0.236 4.236 18 H 0.074 0.926 19 C -0.010 4.010 20 N -0.928 5.928 21 Si 0.902 3.098 22 H -0.280 1.280 23 H -0.293 1.293 24 H -0.292 1.292 25 H 0.032 0.968 26 H 0.085 0.915 27 H 0.040 0.960 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.421 0.579 33 H 0.235 0.765 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.118 0.882 37 H 0.385 0.615 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.779 6.072 -8.315 16.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.072 0.928 5 C -0.012 4.012 6 N -0.339 5.339 7 C 0.382 3.618 8 O -0.430 6.430 9 C -0.157 4.157 10 C -0.080 4.080 11 O -0.120 6.120 12 C 0.131 3.869 13 O -0.150 6.150 14 C -0.070 4.070 15 N -0.188 5.188 16 N -0.363 5.363 17 C -0.367 4.367 18 H 0.092 0.908 19 C -0.207 4.207 20 N -0.576 5.576 21 Si 0.733 3.267 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.219 1.219 25 H 0.051 0.949 26 H 0.104 0.896 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.260 0.740 33 H 0.251 0.749 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.136 0.864 37 H 0.219 0.781 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.288 5.725 -8.363 15.928 hybrid contribution -0.120 0.973 0.537 1.117 sum 12.168 6.698 -7.826 15.943 Atomic orbital electron populations 1.21772 0.95725 0.99581 1.03306 1.22068 0.96988 0.98332 1.00007 1.20569 0.89739 0.92893 0.91588 0.92754 1.21775 0.95930 0.82119 1.01328 1.45852 1.06684 1.11421 1.69967 1.16653 0.83098 0.84728 0.77334 1.90789 1.56492 1.43958 1.51775 1.21794 0.90708 0.94086 1.09115 1.24889 1.00159 0.78747 1.04159 1.84361 1.32274 1.24340 1.71044 1.23415 0.77429 0.88009 0.98071 1.86426 1.32378 1.08315 1.87860 1.23274 0.90823 0.90132 1.02813 1.71245 1.30009 0.95396 1.22162 1.42448 1.16830 1.65808 1.11214 1.19233 0.91810 1.27709 0.97921 0.90848 1.24721 0.98010 1.01506 0.96437 1.69668 1.35078 1.48958 1.03920 0.86196 0.84141 0.78959 0.77363 1.20560 1.22032 1.21941 0.94907 0.89633 0.94111 0.93835 0.92495 0.91509 0.91471 0.74040 0.74889 0.91486 0.91564 0.86404 0.78073 0.93618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.18 37.16 0.34 -2.31 16 2 C -0.13 -2.33 5.61 -26.73 -0.15 -2.48 16 3 C 0.16 3.10 2.59 -67.93 -0.18 2.93 16 4 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 5 C 0.11 1.98 5.23 -4.04 -0.02 1.96 16 6 N -0.69 -12.68 5.38 -61.40 -0.33 -13.01 16 7 C 0.60 10.71 7.81 -12.55 -0.10 10.62 16 8 O -0.55 -10.52 16.89 5.26 0.09 -10.43 16 9 C -0.04 -0.61 6.99 -82.98 -0.58 -1.19 16 10 C -0.01 -0.09 11.93 29.90 0.36 0.27 16 11 O -0.23 -2.78 10.20 -17.76 -0.18 -2.97 16 12 C 0.38 5.45 8.98 52.22 0.47 5.92 16 13 O -0.24 -3.03 10.55 -40.98 -0.43 -3.47 16 14 C 0.02 0.17 10.73 101.05 1.08 1.25 16 15 N -0.44 -7.71 11.10 -11.71 -0.13 -7.84 16 16 N -0.72 -17.07 4.51 -53.43 -0.24 -17.31 16 17 C -0.24 -6.18 7.75 -15.06 -0.12 -6.30 16 18 H 0.07 1.88 7.32 -52.49 -0.38 1.50 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 21 Si 0.90 22.17 29.55 -169.99 -5.02 17.14 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 1.83 5.99 -51.92 -0.31 1.52 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.42 8.39 7.86 -40.82 -0.32 8.07 16 33 H 0.24 2.04 8.06 -52.48 -0.42 1.62 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.39 10.01 7.80 -40.82 -0.32 9.69 16 38 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 331.57 15.07 5.00 5.00 Total: -1.00 -32.19 331.57 -4.63 -36.82 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -5.12 Total: 12.68 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: 1.01 Total: 10.27 kcal Atomic # 7 Polarization: -65.08 SS G_CDS: 0.02 Total: -65.06 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.52 Total: -16.86 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.19 -4.63 -36.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753481533.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.652 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds