Wall clock time and date at job start Tue Mar 31 2020 05:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38235 * 120.00126 * 2 1 4 4 C 1.38229 * 120.00479 * 180.02562 * 3 2 1 5 5 C 1.38239 * 119.99823 * 0.24890 * 4 3 2 6 6 C 1.50693 * 120.00248 * 179.72845 * 5 4 3 7 7 N 1.46503 * 109.47317 * 90.00026 * 6 5 4 8 8 C 1.39782 * 120.00041 * 180.02562 * 7 6 5 9 9 C 1.38952 * 120.00663 * 359.72170 * 8 7 6 10 10 C 1.38014 * 119.99055 * 179.71878 * 9 8 7 11 11 C 1.38894 * 120.00584 * 0.56334 * 10 9 8 12 12 O 1.35801 * 119.99279 * 179.69831 * 11 10 9 13 13 C 1.34817 * 117.00068 * 174.47814 * 12 11 10 14 14 H 1.07999 * 119.99583 * 5.05728 * 13 12 11 15 15 C 1.38620 * 119.99948 * 185.05576 * 13 12 11 16 16 N 1.31578 * 119.99775 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99661 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47390 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.46991 * 120.00252 * 17 15 13 20 20 H 1.48497 * 109.47208 * 239.99946 * 17 15 13 21 21 C 1.38897 * 120.01515 * 359.71418 * 11 10 9 22 22 C 1.38011 * 120.00348 * 0.02562 * 21 11 10 23 23 C 1.38234 * 119.99637 * 359.49268 * 5 4 3 24 24 C 1.38231 * 120.00110 * 179.97438 * 2 1 3 25 25 H 1.09006 * 109.47169 * 90.00324 * 1 2 3 26 26 H 1.09004 * 109.47324 * 209.99925 * 1 2 3 27 27 H 1.09000 * 109.47357 * 330.00210 * 1 2 3 28 28 H 1.08003 * 119.99553 * 359.97294 * 3 2 1 29 29 H 1.08001 * 120.00310 * 179.97438 * 4 3 2 30 30 H 1.09003 * 109.47742 * 210.00655 * 6 5 4 31 31 H 1.09003 * 109.47038 * 330.00382 * 6 5 4 32 32 H 0.97002 * 119.99701 * 359.97438 * 7 6 5 33 33 H 1.07991 * 120.00301 * 0.02562 * 9 8 7 34 34 H 1.07997 * 119.99347 * 180.25717 * 10 9 8 35 35 H 0.97001 * 119.99373 * 179.97438 * 16 15 13 36 36 H 1.08003 * 119.99847 * 179.97438 * 21 11 10 37 37 H 1.07999 * 120.00331 * 179.97438 * 22 21 11 38 38 H 1.08008 * 120.00110 * 180.25210 * 23 5 4 39 39 H 1.08002 * 120.00466 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.2717 0.0001 -0.0063 6 6 5.7786 0.0001 -0.0130 7 7 6.2732 -0.0030 1.3660 8 6 7.6486 -0.0030 1.6152 9 6 8.5469 -0.0060 0.5551 10 6 9.9048 -0.0001 0.8015 11 6 10.3735 -0.0031 2.1090 12 8 11.7098 -0.0035 2.3511 13 6 12.0988 0.1091 3.6370 14 1 11.3613 0.1122 4.4259 15 6 13.4454 0.2210 3.9464 16 7 14.3439 0.2168 2.9851 17 14 13.9843 0.3779 5.7281 18 1 12.7899 0.3574 6.6102 19 1 14.8774 -0.7563 6.0767 20 1 14.7142 1.6577 5.9137 21 6 9.4758 -0.0059 3.1689 22 6 8.1178 -0.0064 2.9230 23 6 3.5805 -1.1971 -0.0009 24 6 2.1981 -1.1971 0.0005 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6581 2.1324 -0.0004 29 1 4.1204 2.1325 -0.0010 30 1 6.1397 -0.8887 -0.5305 31 1 6.1396 0.8912 -0.5265 32 1 5.6461 -0.0042 2.1061 33 1 8.1825 -0.0079 -0.4615 34 1 10.6030 0.0018 -0.0224 35 1 15.2861 0.2955 3.2017 36 1 9.8406 -0.0087 4.1854 37 1 7.4198 -0.0090 3.7472 38 1 4.1205 -2.1325 -0.0012 39 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020126392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:08 Heat of formation + Delta-G solvation = 2.673898 kcal Electronic energy + Delta-G solvation = -20127.520371 eV Core-core repulsion = 16999.559368 eV Total energy + Delta-G solvation = -3127.961003 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.79765 -40.32654 -38.67138 -36.13826 -34.22978 -33.44871 -31.82954 -31.81859 -29.93739 -28.10982 -27.00437 -25.25907 -23.61847 -23.52827 -22.34111 -21.59192 -19.67749 -18.86031 -18.05143 -16.97395 -16.51014 -16.46922 -16.16291 -15.92117 -15.40537 -15.30761 -15.15803 -14.56613 -14.54315 -14.35694 -14.26774 -14.06434 -13.52009 -13.43627 -13.15263 -13.06649 -12.87412 -12.69426 -12.55951 -12.24229 -12.07374 -11.89585 -11.83908 -11.09175 -10.92468 -10.18954 -9.83514 -9.77173 -9.51017 -8.38994 -7.93970 -6.02502 0.31152 0.49541 0.58973 0.93382 1.37013 1.45940 1.55264 2.22906 2.56141 2.91791 3.05710 3.25926 3.67336 3.76934 3.91712 4.08483 4.14029 4.14772 4.19070 4.32002 4.56008 4.57718 4.66329 4.70026 4.70998 4.84660 4.87976 4.96437 4.97401 5.13582 5.19440 5.28136 5.28660 5.47065 5.48645 5.55210 5.69199 5.70573 5.78888 5.98487 6.10417 6.12133 6.59666 7.00160 7.07102 7.93936 8.85762 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.048099 B = 0.002506 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.996858 B =11170.261154 C =11439.163271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.089 4.089 3 C -0.132 4.132 4 C -0.106 4.106 5 C -0.116 4.116 6 C 0.173 3.827 7 N -0.742 5.742 8 C 0.152 3.848 9 C -0.145 4.145 10 C -0.155 4.155 11 C 0.062 3.938 12 O -0.242 6.242 13 C -0.404 4.404 14 H 0.098 0.902 15 C -0.030 4.030 16 N -0.927 5.927 17 Si 1.018 2.982 18 H -0.252 1.252 19 H -0.270 1.270 20 H -0.270 1.270 21 C -0.193 4.193 22 C -0.145 4.145 23 C -0.106 4.106 24 C -0.132 4.132 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.138 0.862 29 H 0.128 0.872 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.400 0.600 33 H 0.143 0.857 34 H 0.114 0.886 35 H 0.269 0.731 36 H 0.119 0.881 37 H 0.137 0.863 38 H 0.128 0.872 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.055 -0.216 -4.984 28.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.089 4.089 3 C -0.150 4.150 4 C -0.125 4.125 5 C -0.116 4.116 6 C 0.049 3.951 7 N -0.376 5.376 8 C 0.052 3.948 9 C -0.167 4.167 10 C -0.175 4.175 11 C 0.012 3.988 12 O -0.150 6.150 13 C -0.481 4.481 14 H 0.115 0.885 15 C -0.226 4.226 16 N -0.567 5.567 17 Si 0.837 3.163 18 H -0.176 1.176 19 H -0.195 1.195 20 H -0.195 1.195 21 C -0.212 4.212 22 C -0.168 4.168 23 C -0.125 4.125 24 C -0.150 4.150 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.156 0.844 29 H 0.146 0.854 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.235 0.765 33 H 0.161 0.839 34 H 0.132 0.868 35 H 0.078 0.922 36 H 0.137 0.863 37 H 0.155 0.845 38 H 0.146 0.854 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -27.686 -0.224 -5.372 28.204 hybrid contribution 0.696 0.056 0.884 1.127 sum -26.990 -0.168 -4.488 27.361 Atomic orbital electron populations 1.20855 0.89506 1.03636 1.03123 1.20319 0.97501 0.93051 0.98050 1.21294 0.93962 0.98560 1.01144 1.21258 0.94725 0.97779 0.98716 1.19847 0.94551 0.93943 1.03285 1.20107 0.89478 1.01626 0.83903 1.44340 1.01661 1.84740 1.06881 1.17528 0.84684 0.99973 0.92648 1.20436 0.90594 1.06954 0.98700 1.20241 0.96042 1.07665 0.93519 1.19739 0.84412 0.99674 0.94936 1.83937 1.18476 1.83295 1.29339 1.21788 0.93168 1.51623 0.81539 0.88456 1.26541 0.94460 0.96554 1.05069 1.70213 1.01785 1.49988 1.34669 0.84540 0.78881 0.78382 0.74451 1.17561 1.19484 1.19517 1.21046 0.93584 1.07987 0.98630 1.20480 0.94066 1.06567 0.95653 1.21260 0.94721 0.97775 0.98702 1.21296 0.93963 0.98556 1.01136 0.90276 0.90730 0.90740 0.84433 0.85442 0.91776 0.91824 0.76466 0.83918 0.86798 0.92165 0.86348 0.84525 0.85416 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.01 71.23 0.71 -0.29 16 2 C -0.09 -1.25 5.88 -19.87 -0.12 -1.37 16 3 C -0.13 -1.96 9.70 22.27 0.22 -1.75 16 4 C -0.11 -1.82 9.70 22.27 0.22 -1.60 16 5 C -0.12 -2.12 5.25 -19.87 -0.10 -2.23 16 6 C 0.17 3.54 5.03 85.63 0.43 3.98 16 7 N -0.74 -18.17 5.73 -342.97 -1.96 -20.13 16 8 C 0.15 4.97 6.66 38.21 0.25 5.23 16 9 C -0.14 -5.07 9.31 22.39 0.21 -4.86 16 10 C -0.15 -6.83 9.98 22.37 0.22 -6.61 16 11 C 0.06 3.20 6.65 22.59 0.15 3.35 16 12 O -0.24 -15.11 9.76 -23.17 -0.23 -15.33 16 13 C -0.40 -24.34 9.48 67.91 0.64 -23.70 16 14 H 0.10 5.39 5.20 -2.91 -0.02 5.38 16 15 C -0.03 -1.78 5.49 84.82 0.47 -1.31 16 16 N -0.93 -58.68 13.67 21.61 0.30 -58.38 16 17 Si 1.02 44.36 29.55 68.60 2.03 46.39 16 18 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 19 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 20 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 21 C -0.19 -8.70 9.16 22.37 0.20 -8.49 16 22 C -0.15 -5.22 9.89 22.39 0.22 -5.00 16 23 C -0.11 -1.81 9.70 22.27 0.22 -1.59 16 24 C -0.13 -1.95 9.70 22.27 0.22 -1.74 16 25 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 26 H 0.07 0.54 8.09 -2.39 -0.02 0.52 16 27 H 0.07 0.54 8.09 -2.39 -0.02 0.52 16 28 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 29 H 0.13 2.01 8.06 -2.91 -0.02 1.98 16 30 H 0.06 1.30 7.88 -2.39 -0.02 1.29 16 31 H 0.06 1.30 7.90 -2.39 -0.02 1.28 16 32 H 0.40 8.82 8.48 -92.71 -0.79 8.03 16 33 H 0.14 4.05 6.73 -2.92 -0.02 4.03 16 34 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 35 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 36 H 0.12 5.43 5.63 -2.91 -0.02 5.41 16 37 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 38 H 0.13 2.00 8.06 -2.91 -0.02 1.97 16 39 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -72.91 334.42 4.57 -68.34 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: 0.28 Total: 27.11 kcal Atomic # 6 Polarization: -52.14 SS G_CDS: 4.16 Total: -47.98 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -1.67 Total: -78.51 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.23 Total: -15.33 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -72.91 4.57 -68.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020126392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.011 kcal (2) G-P(sol) polarization free energy of solvation -72.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds