Wall clock time and date at job start Tue Mar 31 2020 05:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38257 * 119.99950 * 2 1 4 4 C 1.38212 * 119.99903 * 179.97438 * 3 2 1 5 5 C 1.38250 * 120.00222 * 359.81637 * 4 3 2 6 6 C 1.38219 * 119.99995 * 0.41843 * 5 4 3 7 7 C 1.50697 * 120.00282 * 179.81341 * 6 5 4 8 8 N 1.46508 * 109.46792 * 269.72399 * 7 6 5 9 9 C 1.39782 * 119.99596 * 179.97438 * 8 7 6 10 10 C 1.38952 * 120.00069 * 179.97438 * 9 8 7 11 11 C 1.38007 * 119.99068 * 180.02562 * 10 9 8 12 12 C 1.38902 * 120.00707 * 0.02562 * 11 10 9 13 13 O 1.35799 * 119.99285 * 179.97438 * 12 11 10 14 14 C 1.34809 * 117.00240 * 5.54212 * 13 12 11 15 15 H 1.08002 * 120.00081 * 354.94518 * 14 13 12 16 16 C 1.38619 * 120.00270 * 174.94443 * 14 13 12 17 17 N 1.31585 * 120.00083 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00318 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47327 * 89.99597 * 18 16 14 20 20 H 1.48505 * 109.47244 * 210.00161 * 18 16 14 21 21 H 1.48508 * 109.46905 * 329.99933 * 18 16 14 22 22 C 1.38898 * 120.01226 * 0.25730 * 12 11 10 23 23 C 1.38012 * 120.00332 * 359.44679 * 22 12 11 24 24 C 1.38210 * 120.00109 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.47145 * 270.01741 * 1 2 3 26 26 H 1.09002 * 109.47649 * 30.01656 * 1 2 3 27 27 H 1.09002 * 109.47306 * 150.01814 * 1 2 3 28 28 H 1.08002 * 119.99794 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.99376 * 180.02562 * 4 3 2 30 30 H 1.07997 * 120.00640 * 180.22888 * 5 4 3 31 31 H 1.08997 * 109.47217 * 149.72879 * 7 6 5 32 32 H 1.08998 * 109.47304 * 29.72075 * 7 6 5 33 33 H 0.96992 * 119.99615 * 359.97438 * 8 7 6 34 34 H 1.08001 * 120.00614 * 359.97438 * 10 9 8 35 35 H 1.08006 * 119.99831 * 180.02562 * 11 10 9 36 36 H 0.96997 * 120.00089 * 180.02562 * 17 16 14 37 37 H 1.07997 * 119.99637 * 179.70063 * 22 12 11 38 38 H 1.07995 * 120.00083 * 180.27172 * 23 22 12 39 39 H 1.08002 * 119.99969 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0001 0.0049 6 6 3.5807 -1.1970 0.0000 7 6 4.3342 -2.5020 0.0005 8 7 4.5779 -2.9257 -1.3806 9 6 5.2654 -4.1157 -1.6356 10 6 5.4962 -4.5178 -2.9454 11 6 6.1746 -5.6931 -3.1969 12 6 6.6261 -6.4741 -2.1408 13 8 7.2932 -7.6308 -2.3885 14 6 7.5845 -7.9057 -3.6758 15 1 7.2184 -7.2617 -4.4617 16 6 8.3539 -9.0148 -3.9907 17 7 8.8005 -9.7992 -3.0332 18 14 8.7582 -9.3954 -5.7743 19 1 10.0256 -8.7188 -6.1498 20 1 8.9108 -10.8626 -5.9451 21 1 7.6593 -8.9072 -6.6459 22 6 6.3904 -6.0753 -0.8313 23 6 5.7175 -4.8971 -0.5793 24 6 2.1981 -1.1969 0.0005 25 1 -0.3633 0.0003 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3634 -0.8902 -0.5136 28 1 1.6582 2.1326 0.0004 29 1 4.1203 2.1327 0.0010 30 1 5.3517 0.0000 0.0091 31 1 3.7452 -3.2614 0.5148 32 1 5.2867 -2.3714 0.5139 33 1 4.2622 -2.3803 -2.1180 34 1 5.1440 -3.9112 -3.7667 35 1 6.3544 -6.0056 -4.2150 36 1 9.3392 -10.5751 -3.2535 37 1 6.7374 -6.6852 -0.0104 38 1 5.5381 -4.5848 0.4389 39 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020126393.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:12 Heat of formation + Delta-G solvation = 20.874741 kcal Electronic energy + Delta-G solvation = -20195.559144 eV Core-core repulsion = 17068.387389 eV Total energy + Delta-G solvation = -3127.171755 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.78015 -38.91293 -37.03379 -34.77820 -32.88404 -32.11176 -31.31141 -30.15465 -27.73548 -27.11369 -25.75429 -24.60983 -22.45678 -21.97044 -20.86261 -20.44064 -17.79806 -17.08771 -16.83056 -16.24180 -15.75367 -15.23802 -14.80321 -14.40633 -14.04283 -13.87361 -13.70731 -13.52813 -13.38575 -13.18622 -12.95437 -12.57744 -12.47428 -12.38794 -12.19880 -11.53764 -11.47991 -11.36792 -11.19958 -11.05437 -10.90948 -10.55159 -10.34129 -9.21383 -9.16665 -9.06902 -8.86816 -8.42142 -8.14379 -6.37653 -6.30278 -3.87458 1.05401 1.15401 2.22987 2.59946 3.19930 3.20887 3.25089 3.41789 4.07047 4.11603 4.50464 4.56043 4.66809 4.71605 4.90233 5.05860 5.18981 5.22525 5.29998 5.31230 5.44649 5.48400 5.55870 5.61566 5.69075 5.79293 5.85768 5.90802 6.21536 6.23813 6.26984 6.32651 6.43172 6.57027 6.77036 6.88980 6.93136 7.16267 7.34414 7.47594 7.66663 7.99880 8.14215 8.26915 9.15677 9.90485 10.88503 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.041071 B = 0.002582 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.576663 B =10840.045781 C =10966.697919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.091 4.091 3 C -0.119 4.119 4 C -0.120 4.120 5 C -0.108 4.108 6 C -0.094 4.094 7 C 0.174 3.826 8 N -0.755 5.755 9 C 0.124 3.876 10 C -0.141 4.141 11 C -0.190 4.190 12 C 0.113 3.887 13 O -0.189 6.189 14 C -0.386 4.386 15 H 0.088 0.912 16 C 0.036 3.964 17 N -0.869 5.869 18 Si 0.938 3.062 19 H -0.275 1.275 20 H -0.279 1.279 21 H -0.269 1.269 22 C -0.150 4.150 23 C -0.146 4.146 24 C -0.102 4.102 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.391 0.609 34 H 0.105 0.895 35 H 0.127 0.873 36 H 0.267 0.733 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.959 20.043 5.559 24.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.138 4.138 4 C -0.138 4.138 5 C -0.126 4.126 6 C -0.094 4.094 7 C 0.049 3.951 8 N -0.392 5.392 9 C 0.026 3.974 10 C -0.164 4.164 11 C -0.209 4.209 12 C 0.061 3.939 13 O -0.094 6.094 14 C -0.463 4.463 15 H 0.105 0.895 16 C -0.167 4.167 17 N -0.506 5.506 18 Si 0.763 3.237 19 H -0.201 1.201 20 H -0.204 1.204 21 H -0.194 1.194 22 C -0.170 4.170 23 C -0.168 4.168 24 C -0.121 4.121 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.225 0.775 34 H 0.123 0.877 35 H 0.145 0.855 36 H 0.077 0.923 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.729 19.616 5.923 24.123 hybrid contribution 0.116 0.125 -1.229 1.241 sum -12.614 19.741 4.694 23.892 Atomic orbital electron populations 1.20795 0.91177 1.02829 1.02328 1.19932 0.96121 0.93133 0.99915 1.21053 0.94315 0.97456 1.00942 1.21135 0.94282 0.98018 1.00335 1.21121 1.00100 0.91877 0.99507 1.19985 0.93775 0.95032 1.00649 1.19996 0.98046 0.91531 0.85485 1.44202 1.65705 1.24142 1.05111 1.17399 0.98533 0.88157 0.93306 1.20230 1.04098 0.98129 0.93897 1.20991 1.03981 0.96345 0.99629 1.19242 0.94044 0.87683 0.92954 1.83986 1.65051 1.31444 1.28890 1.21231 1.32893 1.11214 0.80969 0.89472 1.25213 0.96226 0.95586 0.99702 1.70050 1.33793 1.14780 1.31983 0.85766 0.79042 0.77979 0.80922 1.20073 1.20425 1.19378 1.20021 1.04783 0.97662 0.94547 1.20171 1.03963 0.95920 0.96771 1.21013 0.93540 0.97738 0.99787 0.91183 0.91611 0.91431 0.86237 0.86031 0.85866 0.92239 0.92199 0.77537 0.87664 0.85508 0.92325 0.86514 0.87147 0.85878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.09 -0.81 5.88 -104.62 -0.62 -1.42 16 3 C -0.12 -1.01 9.70 -39.58 -0.38 -1.39 16 4 C -0.12 -1.04 10.05 -39.59 -0.40 -1.44 16 5 C -0.11 -1.05 9.70 -39.58 -0.38 -1.44 16 6 C -0.09 -0.99 5.25 -104.62 -0.55 -1.54 16 7 C 0.17 2.05 5.04 -5.19 -0.03 2.03 16 8 N -0.76 -10.51 5.73 -59.75 -0.34 -10.85 16 9 C 0.12 2.18 6.66 -83.71 -0.56 1.62 16 10 C -0.14 -2.67 9.89 -39.40 -0.39 -3.06 16 11 C -0.19 -4.22 9.16 -39.42 -0.36 -4.58 16 12 C 0.11 2.81 6.65 -39.09 -0.26 2.55 16 13 O -0.19 -5.53 9.76 -0.04 0.00 -5.53 16 14 C -0.39 -11.09 9.48 30.87 0.29 -10.80 16 15 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 16 C 0.04 1.00 5.49 -17.52 -0.10 0.91 16 17 N -0.87 -26.21 13.67 55.48 0.76 -25.45 16 18 Si 0.94 21.11 29.55 -169.99 -5.02 16.08 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 22 C -0.15 -3.25 9.98 -39.42 -0.39 -3.65 16 23 C -0.15 -2.68 9.30 -39.40 -0.37 -3.05 16 24 C -0.10 -1.02 9.36 -39.58 -0.37 -1.39 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 27 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 28 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 29 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.06 0.70 7.89 -51.93 -0.41 0.29 16 32 H 0.06 0.71 7.89 -51.93 -0.41 0.30 16 33 H 0.39 5.03 8.48 -40.82 -0.35 4.69 16 34 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.13 2.83 5.63 -52.48 -0.30 2.53 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 38 H 0.11 1.73 6.73 -52.49 -0.35 1.37 16 39 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 334.41 15.07 5.04 5.04 Total: -1.00 -31.80 334.41 -9.09 -40.88 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -5.02 Total: 6.88 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: -4.50 Total: -27.05 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.42 Total: -36.30 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: 0.00 Total: -5.53 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.80 -9.09 -40.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020126393.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.759 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds