Wall clock time and date at job start Tue Mar 31 2020 05:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38257 * 119.99950 * 2 1 4 4 C 1.38212 * 119.99903 * 179.97438 * 3 2 1 5 5 C 1.38250 * 120.00222 * 359.81637 * 4 3 2 6 6 C 1.38219 * 119.99995 * 0.41843 * 5 4 3 7 7 C 1.50697 * 120.00282 * 179.81341 * 6 5 4 8 8 N 1.46508 * 109.46792 * 269.72399 * 7 6 5 9 9 C 1.39782 * 119.99596 * 179.97438 * 8 7 6 10 10 C 1.38952 * 120.00069 * 179.97438 * 9 8 7 11 11 C 1.38007 * 119.99068 * 180.02562 * 10 9 8 12 12 C 1.38902 * 120.00707 * 0.02562 * 11 10 9 13 13 O 1.35799 * 119.99285 * 179.97438 * 12 11 10 14 14 C 1.34809 * 117.00240 * 5.54212 * 13 12 11 15 15 H 1.08002 * 120.00081 * 354.94518 * 14 13 12 16 16 C 1.38619 * 120.00270 * 174.94443 * 14 13 12 17 17 N 1.31585 * 120.00083 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00318 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47327 * 89.99597 * 18 16 14 20 20 H 1.48505 * 109.47244 * 210.00161 * 18 16 14 21 21 H 1.48508 * 109.46905 * 329.99933 * 18 16 14 22 22 C 1.38898 * 120.01226 * 0.25730 * 12 11 10 23 23 C 1.38012 * 120.00332 * 359.44679 * 22 12 11 24 24 C 1.38210 * 120.00109 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.47145 * 270.01741 * 1 2 3 26 26 H 1.09002 * 109.47649 * 30.01656 * 1 2 3 27 27 H 1.09002 * 109.47306 * 150.01814 * 1 2 3 28 28 H 1.08002 * 119.99794 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.99376 * 180.02562 * 4 3 2 30 30 H 1.07997 * 120.00640 * 180.22888 * 5 4 3 31 31 H 1.08997 * 109.47217 * 149.72879 * 7 6 5 32 32 H 1.08998 * 109.47304 * 29.72075 * 7 6 5 33 33 H 0.96992 * 119.99615 * 359.97438 * 8 7 6 34 34 H 1.08001 * 120.00614 * 359.97438 * 10 9 8 35 35 H 1.08006 * 119.99831 * 180.02562 * 11 10 9 36 36 H 0.96997 * 120.00089 * 180.02562 * 17 16 14 37 37 H 1.07997 * 119.99637 * 179.70063 * 22 12 11 38 38 H 1.07995 * 120.00083 * 180.27172 * 23 22 12 39 39 H 1.08002 * 119.99969 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0001 0.0049 6 6 3.5807 -1.1970 0.0000 7 6 4.3342 -2.5020 0.0005 8 7 4.5779 -2.9257 -1.3806 9 6 5.2654 -4.1157 -1.6356 10 6 5.4962 -4.5178 -2.9454 11 6 6.1746 -5.6931 -3.1969 12 6 6.6261 -6.4741 -2.1408 13 8 7.2932 -7.6308 -2.3885 14 6 7.5845 -7.9057 -3.6758 15 1 7.2184 -7.2617 -4.4617 16 6 8.3539 -9.0148 -3.9907 17 7 8.8005 -9.7992 -3.0332 18 14 8.7582 -9.3954 -5.7743 19 1 10.0256 -8.7188 -6.1498 20 1 8.9108 -10.8626 -5.9451 21 1 7.6593 -8.9072 -6.6459 22 6 6.3904 -6.0753 -0.8313 23 6 5.7175 -4.8971 -0.5793 24 6 2.1981 -1.1969 0.0005 25 1 -0.3633 0.0003 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3634 -0.8902 -0.5136 28 1 1.6582 2.1326 0.0004 29 1 4.1203 2.1327 0.0010 30 1 5.3517 0.0000 0.0091 31 1 3.7452 -3.2614 0.5148 32 1 5.2867 -2.3714 0.5139 33 1 4.2622 -2.3803 -2.1180 34 1 5.1440 -3.9112 -3.7667 35 1 6.3544 -6.0056 -4.2150 36 1 9.3392 -10.5751 -3.2535 37 1 6.7374 -6.6852 -0.0104 38 1 5.5381 -4.5848 0.4389 39 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020126393.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:11 Heat of formation + Delta-G solvation = 2.835632 kcal Electronic energy + Delta-G solvation = -20196.341379 eV Core-core repulsion = 17068.387389 eV Total energy + Delta-G solvation = -3127.953990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.80247 -40.33239 -38.66660 -36.06095 -34.19026 -33.54367 -32.33240 -31.75374 -29.08358 -27.81633 -27.40227 -26.09328 -23.74334 -22.93582 -22.35322 -21.44038 -19.65486 -18.85870 -17.95796 -17.30177 -16.66619 -16.49210 -16.18354 -15.78691 -15.40661 -15.28838 -15.11754 -14.57097 -14.54475 -14.36574 -14.06566 -13.97333 -13.67258 -13.43547 -13.14126 -13.07253 -12.89324 -12.72538 -12.56300 -12.25925 -12.09110 -11.91170 -11.82253 -11.09658 -10.91645 -10.19066 -9.78743 -9.77258 -9.54524 -8.38757 -7.94294 -6.02430 0.33433 0.47113 0.58897 0.93367 1.37044 1.47024 1.54396 2.23193 2.56467 2.91862 3.05225 3.25875 3.66762 3.73669 3.90804 4.05330 4.13411 4.18779 4.25707 4.42873 4.48029 4.57261 4.61866 4.66264 4.71377 4.83677 4.84333 4.96435 4.99461 5.13479 5.15840 5.28061 5.30778 5.46910 5.54377 5.55835 5.66494 5.69753 5.78786 5.98258 6.10468 6.12038 6.59138 6.99631 7.07156 7.93941 8.85794 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.041071 B = 0.002582 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.576663 B =10840.045781 C =10966.697919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.098 4.098 3 C -0.122 4.122 4 C -0.123 4.123 5 C -0.118 4.118 6 C -0.105 4.105 7 C 0.172 3.828 8 N -0.742 5.742 9 C 0.152 3.848 10 C -0.145 4.145 11 C -0.193 4.193 12 C 0.062 3.938 13 O -0.242 6.242 14 C -0.406 4.406 15 H 0.098 0.902 16 C -0.029 4.029 17 N -0.927 5.927 18 Si 1.017 2.983 19 H -0.265 1.265 20 H -0.273 1.273 21 H -0.254 1.254 22 C -0.155 4.155 23 C -0.145 4.145 24 C -0.114 4.114 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.127 0.873 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.400 0.600 34 H 0.137 0.863 35 H 0.119 0.881 36 H 0.270 0.730 37 H 0.114 0.886 38 H 0.143 0.857 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.715 23.221 5.074 27.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.098 4.098 3 C -0.140 4.140 4 C -0.141 4.141 5 C -0.137 4.137 6 C -0.105 4.105 7 C 0.048 3.952 8 N -0.376 5.376 9 C 0.052 3.948 10 C -0.168 4.168 11 C -0.212 4.212 12 C 0.013 3.987 13 O -0.150 6.150 14 C -0.482 4.482 15 H 0.115 0.885 16 C -0.225 4.225 17 N -0.567 5.567 18 Si 0.837 3.163 19 H -0.190 1.190 20 H -0.197 1.197 21 H -0.177 1.177 22 C -0.175 4.175 23 C -0.167 4.167 24 C -0.133 4.133 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.159 0.841 29 H 0.159 0.841 30 H 0.145 0.855 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.235 0.765 34 H 0.155 0.845 35 H 0.137 0.863 36 H 0.078 0.922 37 H 0.132 0.868 38 H 0.161 0.839 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.541 22.882 5.461 27.656 hybrid contribution 0.437 -0.497 -0.886 1.106 sum -14.104 22.385 4.575 26.850 Atomic orbital electron populations 1.20836 0.89707 1.03485 1.03045 1.20231 0.97356 0.92962 0.99260 1.21385 0.94462 0.98259 0.99897 1.21418 0.94668 0.98471 0.99569 1.21261 1.00470 0.92134 0.99806 1.19856 0.93962 0.94490 1.02218 1.20114 0.98616 0.92531 0.83906 1.44318 1.63947 1.22530 1.06810 1.17524 0.96173 0.88505 0.92645 1.20481 1.03442 0.97228 0.95602 1.21046 1.04252 0.97275 0.98667 1.19739 0.96058 0.88009 0.94917 1.83934 1.67669 1.34170 1.29249 1.21752 1.33182 1.11790 0.81521 0.88462 1.26534 0.95820 0.95088 1.05081 1.70206 1.35711 1.15907 1.34851 0.84608 0.79327 0.77964 0.74430 1.18977 1.19736 1.17731 1.20235 1.04945 0.98797 0.93476 1.20435 1.02947 0.94602 0.98720 1.21133 0.93474 0.98398 1.00253 0.90377 0.90401 0.91384 0.84104 0.84089 0.85494 0.91827 0.91731 0.76462 0.84513 0.86321 0.92152 0.86803 0.83933 0.85755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.01 71.24 0.71 -0.48 16 2 C -0.10 -1.48 5.88 -19.87 -0.12 -1.59 16 3 C -0.12 -1.68 9.70 22.27 0.22 -1.46 16 4 C -0.12 -1.78 10.05 22.27 0.22 -1.55 16 5 C -0.12 -2.01 9.70 22.27 0.22 -1.79 16 6 C -0.10 -1.94 5.25 -19.87 -0.10 -2.04 16 7 C 0.17 3.56 5.04 85.63 0.43 3.99 16 8 N -0.74 -18.22 5.73 -342.96 -1.96 -20.19 16 9 C 0.15 4.97 6.66 38.21 0.25 5.22 16 10 C -0.15 -5.21 9.89 22.39 0.22 -4.99 16 11 C -0.19 -8.68 9.16 22.37 0.20 -8.48 16 12 C 0.06 3.22 6.65 22.59 0.15 3.37 16 13 O -0.24 -15.09 9.76 -23.07 -0.23 -15.31 16 14 C -0.41 -24.41 9.48 67.91 0.64 -23.77 16 15 H 0.10 5.37 5.20 -2.91 -0.02 5.36 16 16 C -0.03 -1.71 5.49 84.82 0.47 -1.24 16 17 N -0.93 -58.68 13.67 21.61 0.30 -58.39 16 18 Si 1.02 44.28 29.55 68.60 2.03 46.30 16 19 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.25 -10.23 7.11 99.48 0.71 -9.53 16 22 C -0.15 -6.83 9.98 22.37 0.22 -6.60 16 23 C -0.14 -5.08 9.30 22.39 0.21 -4.87 16 24 C -0.11 -1.99 9.36 22.27 0.21 -1.79 16 25 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.08 0.63 8.09 -2.39 -0.02 0.61 16 27 H 0.07 0.71 8.09 -2.39 -0.02 0.69 16 28 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 29 H 0.14 1.42 8.06 -2.91 -0.02 1.39 16 30 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 31 H 0.06 1.31 7.89 -2.39 -0.02 1.29 16 32 H 0.06 1.32 7.89 -2.39 -0.02 1.30 16 33 H 0.40 8.86 8.48 -92.71 -0.79 8.07 16 34 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 35 H 0.12 5.43 5.63 -2.91 -0.02 5.41 16 36 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 37 H 0.11 4.95 8.06 -2.91 -0.02 4.92 16 38 H 0.14 4.05 6.73 -2.91 -0.02 4.03 16 39 H 0.12 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -72.84 334.41 4.57 -68.27 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: 0.28 Total: 27.39 kcal Atomic # 6 Polarization: -52.24 SS G_CDS: 4.16 Total: -48.08 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: -1.67 Total: -78.57 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.23 Total: -15.31 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -72.84 4.57 -68.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020126393.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.110 kcal (2) G-P(sol) polarization free energy of solvation -72.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds