Wall clock time and date at job start Tue Mar 31 2020 05:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99832 * 2 1 4 4 H 1.48501 * 109.47000 * 239.99587 * 3 2 1 5 5 H 1.48498 * 109.47039 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46840 * 120.00076 * 3 2 1 7 7 C 1.37878 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99871 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00302 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47514 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00257 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47388 * 180.02562 * 11 10 9 13 13 C 1.38296 * 119.97153 * 89.99367 * 12 11 10 14 14 C 1.38252 * 120.11483 * 180.02562 * 13 12 11 15 15 C 1.38155 * 120.05714 * 359.97438 * 14 13 12 16 16 C 1.38737 * 119.94422 * 0.02562 * 15 14 13 17 17 O 1.35887 * 120.05991 * 179.97438 * 16 15 14 18 18 C 1.35887 * 117.99769 * 90.10019 * 17 16 15 19 19 C 1.38761 * 120.05908 * 0.18394 * 18 17 16 20 20 C 1.38130 * 119.94022 * 179.76919 * 19 18 17 21 21 C 1.38275 * 120.06083 * 0.50734 * 20 19 18 22 22 C 1.38272 * 120.11644 * 359.74613 * 21 20 19 23 23 C 1.38140 * 120.05411 * 359.97438 * 22 21 20 24 24 C 1.38121 * 119.96959 * 270.25476 * 12 11 10 25 25 H 0.96992 * 120.00341 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47054 * 59.99942 * 9 7 2 27 27 H 1.09004 * 109.47261 * 300.00363 * 9 7 2 28 28 H 1.00903 * 110.99870 * 303.95061 * 10 9 7 29 29 H 1.08997 * 109.47656 * 59.99569 * 11 10 9 30 30 H 1.09003 * 109.47091 * 299.99462 * 11 10 9 31 31 H 1.07996 * 119.94237 * 0.02668 * 13 12 11 32 32 H 1.08000 * 119.97157 * 179.97438 * 14 13 12 33 33 H 1.07998 * 120.03083 * 180.02562 * 15 14 13 34 34 H 1.07996 * 120.02417 * 0.02562 * 19 18 17 35 35 H 1.08004 * 119.97226 * 180.25947 * 20 19 18 36 36 H 1.07997 * 119.94260 * 179.72800 * 21 20 19 37 37 H 1.07990 * 119.97691 * 180.02562 * 22 21 20 38 38 H 1.08002 * 120.02627 * 179.97438 * 23 22 21 39 39 H 1.08001 * 120.03049 * 0.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 1.5054 -4.9070 0.0012 12 6 2.5149 -6.0260 0.0031 13 6 2.9760 -6.5384 1.2020 14 6 3.9025 -7.5646 1.2073 15 6 4.3697 -8.0811 0.0141 16 6 3.9088 -7.5688 -1.1900 17 8 4.3671 -8.0747 -2.3649 18 6 3.6906 -9.1150 -2.9187 19 6 2.5655 -9.6269 -2.2881 20 6 1.8769 -10.6812 -2.8556 21 6 2.3136 -11.2334 -4.0457 22 6 3.4374 -10.7286 -4.6736 23 6 4.1265 -9.6705 -4.1132 24 6 2.9828 -6.5351 -1.1925 25 1 -0.4850 0.8399 0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8411 -3.5490 -0.7792 29 1 0.8815 -4.9817 -0.8894 30 1 0.8796 -4.9814 0.8906 31 1 2.6117 -6.1363 2.1358 32 1 4.2613 -7.9627 2.1449 33 1 5.0931 -8.8829 0.0187 34 1 2.2264 -9.1987 -1.3565 35 1 0.9987 -11.0774 -2.3673 36 1 1.7763 -12.0605 -4.4855 37 1 3.7763 -11.1612 -5.6032 38 1 5.0044 -9.2768 -4.6038 39 1 2.6259 -6.1315 -2.1285 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199356.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:29 Heat of formation + Delta-G solvation = 18.949137 kcal Electronic energy + Delta-G solvation = -20442.381783 eV Core-core repulsion = 17315.126527 eV Total energy + Delta-G solvation = -3127.255256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.97312 -38.97451 -37.52311 -35.25822 -32.71240 -31.34351 -30.96338 -30.71385 -29.43131 -27.06522 -24.42827 -23.73879 -22.79342 -22.05894 -21.44698 -20.83544 -18.54341 -17.05802 -16.33506 -16.21171 -16.18056 -16.03710 -14.82463 -14.65893 -14.45721 -14.35053 -13.80067 -13.72086 -13.59238 -13.48041 -13.12519 -12.32435 -12.21502 -12.07548 -11.85942 -11.73058 -11.34877 -11.31387 -11.05002 -10.92528 -10.71462 -10.60744 -9.97868 -9.25799 -9.23192 -8.89120 -8.65521 -8.49509 -8.44701 -7.37171 -6.05291 -4.07542 1.09706 1.11372 1.20439 1.32530 3.07409 3.33235 3.36779 3.40239 3.56460 3.74824 4.42285 4.63471 4.70554 4.83909 4.86125 4.92487 5.11792 5.14125 5.16873 5.30588 5.32049 5.35457 5.42795 5.54636 5.70417 5.77957 5.86750 5.99969 6.09852 6.16778 6.18992 6.29975 6.32390 6.38011 6.56287 6.70717 6.83608 7.17744 7.36450 7.51568 7.74474 8.08219 8.31979 8.54465 9.01135 9.57455 11.05795 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.024042 B = 0.002947 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.341847 B = 9498.914232 C = 9855.762098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.683 5.683 11 C 0.092 3.908 12 C -0.052 4.052 13 C -0.094 4.094 14 C -0.109 4.109 15 C -0.133 4.133 16 C 0.076 3.924 17 O -0.259 6.259 18 C 0.127 3.873 19 C -0.193 4.193 20 C -0.082 4.082 21 C -0.159 4.159 22 C -0.085 4.085 23 C -0.150 4.150 24 C -0.120 4.120 25 H 0.262 0.738 26 H -0.012 1.012 27 H 0.029 0.971 28 H 0.331 0.669 29 H 0.030 0.970 30 H 0.077 0.923 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.590 -23.300 -4.490 24.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.314 5.314 11 C -0.037 4.037 12 C -0.053 4.053 13 C -0.112 4.112 14 C -0.127 4.127 15 C -0.152 4.152 16 C 0.034 3.966 17 O -0.171 6.171 18 C 0.084 3.916 19 C -0.212 4.212 20 C -0.100 4.100 21 C -0.177 4.177 22 C -0.103 4.103 23 C -0.169 4.169 24 C -0.139 4.139 25 H 0.072 0.928 26 H 0.005 0.995 27 H 0.047 0.953 28 H 0.147 0.853 29 H 0.048 0.952 30 H 0.095 0.905 31 H 0.149 0.851 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.657 -23.051 -3.879 24.050 hybrid contribution -0.020 0.952 -0.814 1.253 sum 5.637 -22.099 -4.693 23.284 Atomic orbital electron populations 1.69948 1.06090 1.26981 1.50753 1.24988 0.94891 0.99391 0.95258 0.86524 0.79416 0.82547 0.78711 1.20219 1.21310 1.20112 1.21133 0.93528 0.90160 1.50602 0.91960 1.19587 0.90561 0.87209 0.95907 1.60768 1.20999 1.00430 1.49181 1.20920 0.93209 0.88622 1.00965 1.19966 0.97207 0.96038 0.92071 1.21221 0.96374 0.95340 0.98306 1.21025 0.97338 0.96949 0.97388 1.21260 1.01238 1.01087 0.91597 1.18521 0.98033 0.96164 0.83887 1.84387 1.51582 1.45758 1.35356 1.19272 0.91566 0.87654 0.93128 1.21375 0.97197 1.00344 1.02284 1.20983 0.98815 0.94977 0.95272 1.21087 0.98163 1.01741 0.96703 1.20954 0.94843 0.95155 0.99326 1.20453 1.02664 0.98826 0.94942 1.21294 0.96415 0.97125 0.99048 0.92804 0.99471 0.95263 0.85290 0.95164 0.90476 0.85126 0.85371 0.85639 0.85245 0.85750 0.85935 0.85341 0.85100 0.85444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.69 9.32 -34.44 -0.32 -15.01 16 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.19 5.07 5.44 -4.98 -0.03 5.04 16 10 N -0.68 -14.68 6.48 -116.34 -0.75 -15.44 16 11 C 0.09 1.61 5.81 -4.98 -0.03 1.58 16 12 C -0.05 -0.78 5.39 -104.64 -0.56 -1.35 16 13 C -0.09 -1.26 9.70 -39.55 -0.38 -1.64 16 14 C -0.11 -1.26 10.04 -39.61 -0.40 -1.66 16 15 C -0.13 -1.62 9.91 -39.43 -0.39 -2.01 16 16 C 0.08 1.04 3.95 -39.20 -0.15 0.88 16 17 O -0.26 -3.61 9.98 -3.54 -0.04 -3.64 16 18 C 0.13 1.58 6.67 -39.20 -0.26 1.32 16 19 C -0.19 -2.24 9.20 -39.43 -0.36 -2.60 16 20 C -0.08 -0.80 10.04 -39.61 -0.40 -1.20 16 21 C -0.16 -1.39 10.04 -39.55 -0.40 -1.79 16 22 C -0.08 -0.75 10.04 -39.60 -0.40 -1.15 16 23 C -0.15 -1.60 9.99 -39.42 -0.39 -1.99 16 24 C -0.12 -1.75 9.55 -39.43 -0.38 -2.12 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H -0.01 -0.35 8.14 -51.93 -0.42 -0.77 16 27 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.33 6.96 8.71 -39.29 -0.34 6.61 16 29 H 0.03 0.53 8.09 -51.93 -0.42 0.11 16 30 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 31 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.13 1.53 6.68 -52.49 -0.35 1.18 16 35 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 36 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 339.59 15.07 5.12 5.12 Total: -1.00 -30.96 339.59 -10.22 -41.17 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.31 Total: 4.32 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -4.95 Total: -22.17 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: -0.02 Total: -41.57 kcal Atomic # 8 Polarization: -3.61 SS G_CDS: -0.04 Total: -3.64 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.96 -10.22 -41.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199356.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.123 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds