Wall clock time and date at job start Tue Mar 31 2020 05:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99832 * 2 1 4 4 H 1.48501 * 109.47000 * 239.99587 * 3 2 1 5 5 H 1.48498 * 109.47039 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46840 * 120.00076 * 3 2 1 7 7 C 1.37878 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99871 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00302 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47514 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00257 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47388 * 180.02562 * 11 10 9 13 13 C 1.38296 * 119.97153 * 89.99367 * 12 11 10 14 14 C 1.38252 * 120.11483 * 180.02562 * 13 12 11 15 15 C 1.38155 * 120.05714 * 359.97438 * 14 13 12 16 16 C 1.38737 * 119.94422 * 0.02562 * 15 14 13 17 17 O 1.35887 * 120.05991 * 179.97438 * 16 15 14 18 18 C 1.35887 * 117.99769 * 90.10019 * 17 16 15 19 19 C 1.38761 * 120.05908 * 0.18394 * 18 17 16 20 20 C 1.38130 * 119.94022 * 179.76919 * 19 18 17 21 21 C 1.38275 * 120.06083 * 0.50734 * 20 19 18 22 22 C 1.38272 * 120.11644 * 359.74613 * 21 20 19 23 23 C 1.38140 * 120.05411 * 359.97438 * 22 21 20 24 24 C 1.38121 * 119.96959 * 270.25476 * 12 11 10 25 25 H 0.96992 * 120.00341 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47054 * 59.99942 * 9 7 2 27 27 H 1.09004 * 109.47261 * 300.00363 * 9 7 2 28 28 H 1.00903 * 110.99870 * 303.95061 * 10 9 7 29 29 H 1.08997 * 109.47656 * 59.99569 * 11 10 9 30 30 H 1.09003 * 109.47091 * 299.99462 * 11 10 9 31 31 H 1.07996 * 119.94237 * 0.02668 * 13 12 11 32 32 H 1.08000 * 119.97157 * 179.97438 * 14 13 12 33 33 H 1.07998 * 120.03083 * 180.02562 * 15 14 13 34 34 H 1.07996 * 120.02417 * 0.02562 * 19 18 17 35 35 H 1.08004 * 119.97226 * 180.25947 * 20 19 18 36 36 H 1.07997 * 119.94260 * 179.72800 * 21 20 19 37 37 H 1.07990 * 119.97691 * 180.02562 * 22 21 20 38 38 H 1.08002 * 120.02627 * 179.97438 * 23 22 21 39 39 H 1.08001 * 120.03049 * 0.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 1.5054 -4.9070 0.0012 12 6 2.5149 -6.0260 0.0031 13 6 2.9760 -6.5384 1.2020 14 6 3.9025 -7.5646 1.2073 15 6 4.3697 -8.0811 0.0141 16 6 3.9088 -7.5688 -1.1900 17 8 4.3671 -8.0747 -2.3649 18 6 3.6906 -9.1150 -2.9187 19 6 2.5655 -9.6269 -2.2881 20 6 1.8769 -10.6812 -2.8556 21 6 2.3136 -11.2334 -4.0457 22 6 3.4374 -10.7286 -4.6736 23 6 4.1265 -9.6705 -4.1132 24 6 2.9828 -6.5351 -1.1925 25 1 -0.4850 0.8399 0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8411 -3.5490 -0.7792 29 1 0.8815 -4.9817 -0.8894 30 1 0.8796 -4.9814 0.8906 31 1 2.6117 -6.1363 2.1358 32 1 4.2613 -7.9627 2.1449 33 1 5.0931 -8.8829 0.0187 34 1 2.2264 -9.1987 -1.3565 35 1 0.9987 -11.0774 -2.3673 36 1 1.7763 -12.0605 -4.4855 37 1 3.7763 -11.1612 -5.6032 38 1 5.0044 -9.2768 -4.6038 39 1 2.6259 -6.1315 -2.1285 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020199356.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:29 Heat of formation + Delta-G solvation = 1.592461 kcal Electronic energy + Delta-G solvation = -20443.134425 eV Core-core repulsion = 17315.126527 eV Total energy + Delta-G solvation = -3128.007898 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.92027 -39.93752 -38.47598 -36.92840 -34.69548 -32.39896 -32.15220 -31.56974 -30.36511 -28.89986 -26.06609 -24.65784 -23.59829 -23.56366 -22.90451 -21.91957 -19.53113 -18.59689 -17.82892 -17.28808 -17.14842 -16.85138 -16.75039 -16.11688 -15.56009 -15.33240 -15.23834 -14.78898 -14.60308 -14.54074 -14.37096 -14.03635 -13.44226 -13.32632 -13.12418 -12.92732 -12.68262 -12.61136 -12.57440 -12.44497 -12.11604 -11.88736 -11.80169 -11.34596 -10.68115 -10.01705 -9.94348 -9.72691 -9.27989 -9.19508 -8.24731 -6.36264 0.06371 0.25357 0.36407 0.41962 1.40359 1.43888 1.52030 2.12199 2.38633 2.70001 2.80006 3.08539 3.61146 3.79787 3.87834 3.89176 3.96295 4.05054 4.23499 4.25754 4.31930 4.41104 4.47745 4.54789 4.60864 4.65334 4.88838 4.94692 5.03820 5.05504 5.20703 5.30393 5.31904 5.36261 5.45725 5.55774 5.56446 5.60082 5.70633 5.95766 5.97812 6.36405 6.56505 6.62454 6.83038 7.34541 8.86663 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.024042 B = 0.002947 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.341847 B = 9498.914232 C = 9855.762098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.208 3.792 10 N -0.681 5.681 11 C 0.096 3.904 12 C -0.065 4.065 13 C -0.100 4.100 14 C -0.096 4.096 15 C -0.129 4.129 16 C 0.072 3.928 17 O -0.275 6.275 18 C 0.099 3.901 19 C -0.207 4.207 20 C -0.089 4.089 21 C -0.156 4.156 22 C -0.082 4.082 23 C -0.162 4.162 24 C -0.131 4.131 25 H 0.266 0.734 26 H -0.038 1.038 27 H 0.006 0.994 28 H 0.333 0.667 29 H 0.026 0.974 30 H 0.078 0.922 31 H 0.139 0.861 32 H 0.164 0.836 33 H 0.146 0.854 34 H 0.120 0.880 35 H 0.144 0.856 36 H 0.152 0.848 37 H 0.159 0.841 38 H 0.138 0.862 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.875 -24.789 -4.585 26.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.577 4.577 8 H 0.081 0.919 9 C 0.081 3.919 10 N -0.311 5.311 11 C -0.032 4.032 12 C -0.066 4.066 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.147 4.147 16 C 0.030 3.970 17 O -0.188 6.188 18 C 0.056 3.944 19 C -0.226 4.226 20 C -0.107 4.107 21 C -0.174 4.174 22 C -0.100 4.100 23 C -0.180 4.180 24 C -0.150 4.150 25 H 0.075 0.925 26 H -0.020 1.020 27 H 0.024 0.976 28 H 0.149 0.851 29 H 0.044 0.956 30 H 0.097 0.903 31 H 0.156 0.844 32 H 0.181 0.819 33 H 0.164 0.836 34 H 0.138 0.862 35 H 0.161 0.839 36 H 0.170 0.830 37 H 0.177 0.823 38 H 0.156 0.844 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.950 -24.569 -3.978 25.841 hybrid contribution -0.438 1.251 -0.841 1.569 sum 6.512 -23.318 -4.819 24.686 Atomic orbital electron populations 1.70073 1.07769 1.28183 1.51297 1.25949 0.95812 1.03370 0.94458 0.85378 0.78129 0.77581 0.79178 1.19215 1.20609 1.19224 1.21495 0.93784 0.91430 1.50986 0.91874 1.19239 0.90577 0.88625 0.93506 1.60643 1.20260 1.00946 1.49252 1.20888 0.93880 0.87682 1.00799 1.19692 0.97700 0.96029 0.93165 1.21384 0.96800 0.95927 0.97783 1.21355 0.95838 0.95558 0.98604 1.21546 1.00991 1.01100 0.91082 1.18632 0.97748 0.95949 0.84683 1.84336 1.52148 1.46642 1.35650 1.19565 0.92498 0.88064 0.94235 1.21415 0.97547 1.01306 1.02352 1.21294 0.99226 0.94400 0.95818 1.21492 0.97921 1.01932 0.96011 1.21354 0.94382 0.94168 1.00106 1.20736 1.03305 0.99465 0.94538 1.21227 0.97325 0.98011 0.98478 0.92499 1.02048 0.97599 0.85066 0.95582 0.90317 0.84363 0.81872 0.83630 0.86192 0.83869 0.83043 0.82345 0.84412 0.86557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.79 13.29 21.45 0.28 -56.51 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.97 44.71 29.54 68.60 2.03 46.73 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.54 -31.28 9.32 25.60 0.24 -31.04 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 9 C 0.21 11.34 5.44 85.56 0.47 11.80 16 10 N -0.68 -30.23 6.48 -522.00 -3.38 -33.61 16 11 C 0.10 3.51 5.81 85.56 0.50 4.01 16 12 C -0.07 -2.00 5.39 -19.88 -0.11 -2.11 16 13 C -0.10 -2.60 9.70 22.29 0.22 -2.38 16 14 C -0.10 -2.00 10.04 22.25 0.22 -1.78 16 15 C -0.13 -2.93 9.91 22.37 0.22 -2.71 16 16 C 0.07 1.97 3.95 22.52 0.09 2.06 16 17 O -0.27 -7.78 9.98 -35.58 -0.36 -8.14 16 18 C 0.10 2.46 6.67 22.52 0.15 2.61 16 19 C -0.21 -4.76 9.20 22.37 0.21 -4.56 16 20 C -0.09 -1.61 10.04 22.25 0.22 -1.38 16 21 C -0.16 -2.32 10.04 22.29 0.22 -2.10 16 22 C -0.08 -1.27 10.04 22.25 0.22 -1.04 16 23 C -0.16 -3.30 9.99 22.37 0.22 -3.08 16 24 C -0.13 -3.96 9.55 22.37 0.21 -3.74 16 25 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 26 H -0.04 -2.23 8.14 -2.39 -0.02 -2.25 16 27 H 0.01 0.34 8.14 -2.38 -0.02 0.33 16 28 H 0.33 14.48 8.71 -89.69 -0.78 13.69 16 29 H 0.03 0.96 8.09 -2.39 -0.02 0.94 16 30 H 0.08 2.80 8.08 -2.39 -0.02 2.78 16 31 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 32 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 34 H 0.12 2.89 6.68 -2.91 -0.02 2.87 16 35 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 36 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 37 H 0.16 1.42 8.06 -2.92 -0.02 1.40 16 38 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 39 H 0.12 3.64 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -67.77 339.59 2.61 -65.16 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.26 Total: 21.20 kcal Atomic # 6 Polarization: -38.61 SS G_CDS: 3.77 Total: -34.84 kcal Atomic # 7 Polarization: -87.02 SS G_CDS: -3.10 Total: -90.12 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: -0.36 Total: -8.14 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -67.77 2.61 -65.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199356.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.752 kcal (2) G-P(sol) polarization free energy of solvation -67.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds